RNA–Protein interactions for RNA: ENST00000508974.5

UBE2D3-228, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 4

Gene UBE2D3, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-228ENST00000508974 CCDC179H3BU77 68 aa5.44□□□□□ -1.54
UBE2D3-228ENST00000508974 KRTAP19-5Q3LI72 72 aa5.44□□□□□ -1.54
UBE2D3-228ENST00000508974 DSTQ03001 7570 aaKnown RBP5.43□□□□□ -1.54
UBE2D3-228ENST00000508974 PRR15LQ9BU68 103 aa5.33□□□□□ -1.56
UBE2D3-228ENST00000508974 ATP5EP56381 51 aaPredicted RBP5.32□□□□□ -1.56
UBE2D3-228ENST00000508974 LCE3AQ5TA76 89 aa5.32□□□□□ -1.56
UBE2D3-228ENST00000508974 C10orf95Q9H7T3 257 aa5.32□□□□□ -1.56
UBE2D3-228ENST00000508974 MT1GP13640 62 aa5.31□□□□□ -1.56
UBE2D3-228ENST00000508974 TNP1P09430 55 aa5.29□□□□□ -1.56
UBE2D3-228ENST00000508974 PP632Q6XCG6 107 aa5.28□□□□□ -1.56
UBE2D3-228ENST00000508974 MT1LQ93083 61 aa5.27□□□□□ -1.57
UBE2D3-228ENST00000508974 MT1MQ8N339 61 aa5.26□□□□□ -1.57
UBE2D3-228ENST00000508974 LINC01558Q9Y6Z2 57 aa5.26□□□□□ -1.57
UBE2D3-228ENST00000508974 KRTAP4-3Q9BYR4 195 aa5.2□□□□□ -1.58
UBE2D3-228ENST00000508974 TMEM258P61165 79 aa5.18□□□□□ -1.58
UBE2D3-228ENST00000508974 UQCR11O14957 56 aa5.15□□□□□ -1.59
UBE2D3-228ENST00000508974 MT4P47944 62 aa5.13□□□□□ -1.59
UBE2D3-228ENST00000508974 KRTAP5-11Q6L8G4 156 aa5.12□□□□□ -1.59
UBE2D3-228ENST00000508974 GPR98Q8WXG9 6306 aa5.1□□□□□ -1.59
UBE2D3-228ENST00000508974 KRTAP12-3P60328 96 aa5.08□□□□□ -1.6
UBE2D3-228ENST00000508974 MIR22HGQ0VDD5 57 aa5.05□□□□□ -1.6
UBE2D3-228ENST00000508974 HMCN1Q96RW7 5635 aa5.04□□□□□ -1.6
UBE2D3-228ENST00000508974 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.01□□□□□ -1.61
UBE2D3-228ENST00000508974 MT3P25713 68 aa4.98□□□□□ -1.61
UBE2D3-228ENST00000508974 KRTAP5-4Q6L8H1 288 aa4.98□□□□□ -1.61
UBE2D3-228ENST00000508974 PSPHP1O15172 72 aa4.97□□□□□ -1.61
UBE2D3-228ENST00000508974 KRTAP25-1Q3LHN0 102 aa4.96□□□□□ -1.62
UBE2D3-228ENST00000508974 LCE1EQ5T753 118 aa4.96□□□□□ -1.62
UBE2D3-228ENST00000508974 A0A0A0MQY5 61 aa4.95□□□□□ -1.62
UBE2D3-228ENST00000508974 K7ERS5 55 aa4.94□□□□□ -1.62
UBE2D3-228ENST00000508974 PCP4P48539 62 aa4.93□□□□□ -1.62
UBE2D3-228ENST00000508974 V9GYY9 64 aa4.89□□□□□ -1.63
UBE2D3-228ENST00000508974 Q1T7F1 81 aa4.86□□□□□ -1.63
UBE2D3-228ENST00000508974 AHNAK2Q8IVF2 5795 aa4.85□□□□□ -1.63
UBE2D3-228ENST00000508974 KRTAP5-5Q701N2 237 aaPredicted RBP4.79□□□□□ -1.64
UBE2D3-228ENST00000508974 A6NED7 52 aa4.78□□□□□ -1.64
UBE2D3-228ENST00000508974 SVIPQ8NHG7 77 aa4.78□□□□□ -1.64
UBE2D3-228ENST00000508974 KRTAP5-10Q6L8G5 202 aa4.76□□□□□ -1.65
UBE2D3-228ENST00000508974 KRTAP20-2Q3LI61 65 aa4.74□□□□□ -1.65
UBE2D3-228ENST00000508974 CDC42SE1Q9NRR8 79 aa4.69□□□□□ -1.66
UBE2D3-228ENST00000508974 KRTAP12-4P60329 112 aa4.68□□□□□ -1.66
UBE2D3-228ENST00000508974 SPRR5A0A1B0GTR4 108 aa4.67□□□□□ -1.66
UBE2D3-228ENST00000508974 LCE3CQ5T5A8 94 aa4.67□□□□□ -1.66
UBE2D3-228ENST00000508974 ROMO1P60602 79 aa4.61□□□□□ -1.67
UBE2D3-228ENST00000508974 LCE1FQ5T754 118 aa4.6□□□□□ -1.67
UBE2D3-228ENST00000508974 SYNE1Q8NF91 8797 aaKnown RBP4.6□□□□□ -1.67
UBE2D3-228ENST00000508974 KRTAP5-7Q6L8G8 165 aa4.56□□□□□ -1.68
UBE2D3-228ENST00000508974 RPS28P62857 69 aaKnown RBP4.55□□□□□ -1.68
UBE2D3-228ENST00000508974 KRTAP6-1Q3LI64 71 aa4.48□□□□□ -1.69
UBE2D3-228ENST00000508974 MT1AP04731 61 aa4.47□□□□□ -1.69
UBE2D3-228ENST00000508974 KRTAP9-6A8MVA2 160 aa4.44□□□□□ -1.7
UBE2D3-228ENST00000508974 KRTAP5-1Q6L8H4 278 aa4.39□□□□□ -1.71
UBE2D3-228ENST00000508974 KRTAP5-2Q701N4 177 aa4.36□□□□□ -1.71
UBE2D3-228ENST00000508974 KRTAP6-2Q3LI66 62 aa4.29□□□□□ -1.72
UBE2D3-228ENST00000508974 KRTAP4-4Q9BYR3 166 aa4.2□□□□□ -1.74
UBE2D3-228ENST00000508974 OBSCNQ5VST9 7968 aa4.19□□□□□ -1.74
UBE2D3-228ENST00000508974 KRTAP5-8O75690 187 aa4.18□□□□□ -1.74
UBE2D3-228ENST00000508974 NDUFAF8A1L188 74 aa4.12□□□□□ -1.75
UBE2D3-228ENST00000508974 PRAC1Q96KF2 57 aa4.09□□□□□ -1.75
UBE2D3-228ENST00000508974 BRK1Q8WUW1 75 aa4.06□□□□□ -1.76
UBE2D3-228ENST00000508974 MUC5ACP98088 5654 aa4□□□□□ -1.77
UBE2D3-228ENST00000508974 LCE3EQ5T5B0 92 aa3.99□□□□□ -1.77
UBE2D3-228ENST00000508974 MUC5BQ9HC84 5762 aaPredicted RBP3.98□□□□□ -1.77
UBE2D3-228ENST00000508974 AHNAKQ09666 5890 aaKnown RBP3.95□□□□□ -1.78
UBE2D3-228ENST00000508974 PMAIP1Q13794 54 aa3.78□□□□□ -1.8
UBE2D3-228ENST00000508974 LCE1BQ5T7P3 118 aa3.6□□□□□ -1.83
UBE2D3-228ENST00000508974 LCE1CQ5T751 118 aa3.46□□□□□ -1.86
UBE2D3-228ENST00000508974 PRO0628Q9UI54 55 aa3.39□□□□□ -1.87
UBE2D3-228ENST00000508974 LCE3DQ9BYE3 92 aa3.36□□□□□ -1.87
UBE2D3-228ENST00000508974 KTN1-AS1Q86SY8 53 aa3.29□□□□□ -1.88
UBE2D3-228ENST00000508974 LUZP6Q538Z0 58 aa3.09□□□□□ -1.91
UBE2D3-228ENST00000508974 KRTAP21-2Q3LI59 83 aa2.93□□□□□ -1.94
UBE2D3-228ENST00000508974 PHGR1C9JFL3 82 aa2.81□□□□□ -1.96
UBE2D3-228ENST00000508974 MUC19Q7Z5P9 8384 aa2.69□□□□□ -1.98
UBE2D3-228ENST00000508974 PRM1P04553 51 aa2.39□□□□□ -2.03
UBE2D3-228ENST00000508974 KRTAP21-1Q3LI58 79 aa2.09□□□□□ -2.07
UBE2D3-228ENST00000508974 INE1O15225 51 aa1.85□□□□□ -2.11
UBE2D3-228ENST00000508974 MUC16Q8WXI7 14507 aa1.8□□□□□ -2.12
Retrieved 78 of 20,778 RNA–protein pairs in 12.8 ms