RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 MYO18BQ8IUG5 2567 aa0.42□□□□□ -2.34
NUP54-208ENST00000508604 VPS13BQ7Z7G8 4022 aa0.42□□□□□ -2.34
NUP54-208ENST00000508604 CMYA5Q8N3K9 4069 aa0.42□□□□□ -2.34
NUP54-208ENST00000508604 HMCN2Q8NDA2 5059 aa0.42□□□□□ -2.34
NUP54-208ENST00000508604 HIVEP1P15822 2718 aa0.42□□□□□ -2.34
NUP54-208ENST00000508604 DNAH3Q8TD57 4116 aa0.42□□□□□ -2.34
NUP54-208ENST00000508604 FLNAP21333 2647 aaKnown RBP0.42□□□□□ -2.34
NUP54-208ENST00000508604 MYCBP2O75592 4640 aa0.42□□□□□ -2.34
NUP54-208ENST00000508604 DNAH6Q9C0G6 4158 aa0.41□□□□□ -2.34
NUP54-208ENST00000508604 CEP295Q9C0D2 2601 aa0.41□□□□□ -2.34
NUP54-208ENST00000508604 ANKRD11Q6UB99 2663 aaPredicted RBP0.41□□□□□ -2.34
NUP54-208ENST00000508604 DNAH7Q8WXX0 4024 aa0.4□□□□□ -2.34
NUP54-208ENST00000508604 VPS13CQ709C8 3753 aa0.4□□□□□ -2.35
NUP54-208ENST00000508604 PRKDCP78527 4128 aaKnown RBP0.4□□□□□ -2.35
NUP54-208ENST00000508604 IGSF10Q6WRI0 2623 aa0.4□□□□□ -2.35
NUP54-208ENST00000508604 FLGP20930 4061 aaPredicted RBP0.4□□□□□ -2.35
NUP54-208ENST00000508604 DNAH8Q96JB1 4490 aa0.39□□□□□ -2.35
NUP54-208ENST00000508604 TNXBP22105 4242 aa0.39□□□□□ -2.35
NUP54-208ENST00000508604 MT1EP04732 61 aa0.39□□□□□ -2.35
NUP54-208ENST00000508604 SPRR2BP35325 72 aa0.39□□□□□ -2.35
NUP54-208ENST00000508604 DYNC2H1Q8NCM8 4307 aaKnown RBP0.39□□□□□ -2.35
NUP54-208ENST00000508604 ANK3Q12955 4377 aaKnown RBP0.39□□□□□ -2.35
NUP54-208ENST00000508604 MGAM2Q2M2H8 2515 aa0.38□□□□□ -2.35
NUP54-208ENST00000508604 SACSQ9NZJ4 4579 aa0.38□□□□□ -2.35
NUP54-208ENST00000508604 SPRR2DP22532 72 aa0.38□□□□□ -2.35
NUP54-208ENST00000508604 SPRR2AP35326 72 aa0.38□□□□□ -2.35
NUP54-208ENST00000508604 KRTAP19-8Q3LI54 63 aa0.38□□□□□ -2.35
NUP54-208ENST00000508604 MT1LQ93083 61 aa0.38□□□□□ -2.35
NUP54-208ENST00000508604 DNAH1Q9P2D7 4330 aa0.37□□□□□ -2.35
NUP54-208ENST00000508604 MT1XP80297 61 aa0.37□□□□□ -2.35
NUP54-208ENST00000508604 KRTAP19-2Q3LHN2 52 aa0.37□□□□□ -2.35
NUP54-208ENST00000508604 SPRR2FQ96RM1 72 aa0.37□□□□□ -2.35
NUP54-208ENST00000508604 HUWE1Q7Z6Z7 4374 aaKnown RBP0.37□□□□□ -2.35
NUP54-208ENST00000508604 PKD1P98161 4303 aa0.37□□□□□ -2.35
NUP54-208ENST00000508604 KRTAP6-2Q3LI66 62 aa0.37□□□□□ -2.35
NUP54-208ENST00000508604 PKHD1L1Q86WI1 4243 aa0.37□□□□□ -2.35
NUP54-208ENST00000508604 FLNBO75369 2602 aaKnown RBP0.36□□□□□ -2.35
NUP54-208ENST00000508604 SPRR2EP22531 72 aa0.36□□□□□ -2.35
NUP54-208ENST00000508604 KRTAP19-3Q7Z4W3 81 aa0.36□□□□□ -2.35
NUP54-208ENST00000508604 HSPG2P98160 4391 aa0.36□□□□□ -2.35
NUP54-208ENST00000508604 DNAH10Q8IVF4 4471 aa0.36□□□□□ -2.35
NUP54-208ENST00000508604 MT1HP80294 61 aa0.35□□□□□ -2.35
NUP54-208ENST00000508604 LRP1Q07954 4544 aaKnown RBP0.35□□□□□ -2.35
NUP54-208ENST00000508604 PKHD1P08F94 4074 aa0.35□□□□□ -2.35
NUP54-208ENST00000508604 DNAH2Q9P225 4427 aa0.34□□□□□ -2.35
NUP54-208ENST00000508604 DNAH9Q9NYC9 4486 aa0.34□□□□□ -2.35
NUP54-208ENST00000508604 DNAH17Q9UFH2 4485 aa0.34□□□□□ -2.35
NUP54-208ENST00000508604 FAT2Q9NYQ8 4349 aa0.33□□□□□ -2.36
NUP54-208ENST00000508604 MT1BP07438 61 aa0.33□□□□□ -2.36
NUP54-208ENST00000508604 KRTAP21-1Q3LI58 79 aa0.33□□□□□ -2.36
NUP54-208ENST00000508604 KRTAP19-7Q3SYF9 63 aa0.33□□□□□ -2.36
NUP54-208ENST00000508604 SYNE1Q8NF91 8797 aaKnown RBP0.33□□□□□ -2.36
NUP54-208ENST00000508604 FAT3Q8TDW7 4589 aa0.32□□□□□ -2.36
NUP54-208ENST00000508604 MT1HL1P0DM35 61 aa0.32□□□□□ -2.36
NUP54-208ENST00000508604 USH2AO75445 5202 aa0.32□□□□□ -2.36
NUP54-208ENST00000508604 MUC12Q9UKN1 5478 aa0.31□□□□□ -2.36
NUP54-208ENST00000508604 APOBP04114 4563 aaKnown RBP0.3□□□□□ -2.36
NUP54-208ENST00000508604 FAT1Q14517 4588 aa0.3□□□□□ -2.36
NUP54-208ENST00000508604 MT1GP13640 62 aa0.3□□□□□ -2.36
NUP54-208ENST00000508604 MT1MQ8N339 61 aa0.3□□□□□ -2.36
NUP54-208ENST00000508604 PLECQ15149 4684 aaKnown RBP0.29□□□□□ -2.36
NUP54-208ENST00000508604 DNAH5Q8TE73 4624 aa0.29□□□□□ -2.36
NUP54-208ENST00000508604 MT2AP02795 61 aa0.29□□□□□ -2.36
NUP54-208ENST00000508604 STARD9Q9P2P6 4700 aa0.29□□□□□ -2.36
NUP54-208ENST00000508604 PHGR1C9JFL3 82 aa0.28□□□□□ -2.36
NUP54-208ENST00000508604 MT1FP04733 61 aa0.28□□□□□ -2.36
NUP54-208ENST00000508604 LPAP08519 4548 aa0.28□□□□□ -2.36
NUP54-208ENST00000508604 KRTAP6-1Q3LI64 71 aa0.27□□□□□ -2.37
NUP54-208ENST00000508604 BIRC6Q9NR09 4857 aa0.27□□□□□ -2.37
NUP54-208ENST00000508604 DYNC1H1Q14204 4646 aaKnown RBP0.26□□□□□ -2.37
NUP54-208ENST00000508604 MUC17Q685J3 4493 aa0.25□□□□□ -2.37
NUP54-208ENST00000508604 LRP1BQ9NZR2 4599 aa0.24□□□□□ -2.37
NUP54-208ENST00000508604 LRP2P98164 4655 aa0.22□□□□□ -2.37
NUP54-208ENST00000508604 HERC2O95714 4834 aa0.22□□□□□ -2.37
NUP54-208ENST00000508604 DNHD1Q96M86 4753 aa0.18□□□□□ -2.38
NUP54-208ENST00000508604 KRTAP19-6Q3LI70 58 aa0.16□□□□□ -2.38
NUP54-208ENST00000508604 MT4P47944 62 aa0.11□□□□□ -2.39
NUP54-208ENST00000508604 KRTAP20-2Q3LI61 65 aa0.1□□□□□ -2.39
Retrieved 78 of 20,778 RNA–protein pairs in 60.1 ms