RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 EP400Q96L91 3159 aa-0.78□□□□□ -2.53
HMGB1P28-201ENST00000507778 DNAH12Q6ZR08 3092 aa-0.78□□□□□ -2.53
HMGB1P28-201ENST00000507778 MT1FP04733 61 aa-0.79□□□□□ -2.54
HMGB1P28-201ENST00000507778 USP34Q70CQ2 3546 aa-0.79□□□□□ -2.54
HMGB1P28-201ENST00000507778 PRXQ9BXM0 1461 aa-0.8□□□□□ -2.54
HMGB1P28-201ENST00000507778 ADCY10Q96PN6 1610 aa-0.81□□□□□ -2.54
HMGB1P28-201ENST00000507778 CEP250Q9BV73 2442 aa-0.81□□□□□ -2.54
HMGB1P28-201ENST00000507778 DEFB131AP59861 70 aa-0.81□□□□□ -2.54
HMGB1P28-201ENST00000507778 SERF2P84101 59 aa-0.81□□□□□ -2.54
HMGB1P28-201ENST00000507778 DNAH14Q0VDD8 3507 aa-0.82□□□□□ -2.54
HMGB1P28-201ENST00000507778 MKI67P46013 3256 aaKnown RBP-0.82□□□□□ -2.54
HMGB1P28-201ENST00000507778 SMCO4Q9NRQ5 59 aa-0.82□□□□□ -2.54
HMGB1P28-201ENST00000507778 UNC80Q8N2C7 3258 aa-0.83□□□□□ -2.54
HMGB1P28-201ENST00000507778 ABCC8Q09428 1581 aa-0.83□□□□□ -2.54
HMGB1P28-201ENST00000507778 ERICH3Q5RHP9 1530 aa-0.83□□□□□ -2.54
HMGB1P28-201ENST00000507778 ASPMQ8IZT6 3477 aa-0.83□□□□□ -2.54
HMGB1P28-201ENST00000507778 H0YGX0 51 aa-0.84□□□□□ -2.54
HMGB1P28-201ENST00000507778 PDCD5O14737 125 aa-0.84□□□□□ -2.54
HMGB1P28-201ENST00000507778 PLNP26678 52 aa-0.84□□□□□ -2.54
HMGB1P28-201ENST00000507778 CFAP47Q6ZTR5 3102 aa-0.84□□□□□ -2.54
HMGB1P28-201ENST00000507778 S100ZQ8WXG8 99 aa-0.85□□□□□ -2.55
HMGB1P28-201ENST00000507778 TTTY10Q9BZA0 68 aa-0.85□□□□□ -2.55
HMGB1P28-201ENST00000507778 FANCD2Q9BXW9 1451 aa-0.86□□□□□ -2.55
HMGB1P28-201ENST00000507778 SMIM2Q9BVW6 85 aa-0.86□□□□□ -2.55
HMGB1P28-201ENST00000507778 TRPM2O94759 1503 aa-0.86□□□□□ -2.55
HMGB1P28-201ENST00000507778 LOC400499M0QZD8 3231 aa-0.87□□□□□ -2.55
HMGB1P28-201ENST00000507778 CENPEQ02224 2701 aa-0.88□□□□□ -2.55
HMGB1P28-201ENST00000507778 BRCA2P51587 3418 aa-0.89□□□□□ -2.55
HMGB1P28-201ENST00000507778 A0A087WWC5 75 aa-0.89□□□□□ -2.55
HMGB1P28-201ENST00000507778 DUOX1Q9NRD9 1551 aa-0.89□□□□□ -2.55
HMGB1P28-201ENST00000507778 A0A096LNI7 61 aa-0.9□□□□□ -2.55
HMGB1P28-201ENST00000507778 TOMM7Q9P0U1 55 aa-0.9□□□□□ -2.55
HMGB1P28-201ENST00000507778 NDUFA1O15239 70 aa-0.91□□□□□ -2.56
HMGB1P28-201ENST00000507778 HTN1P15515 57 aa-0.91□□□□□ -2.56
HMGB1P28-201ENST00000507778 DEFB133Q30KQ1 61 aa-0.92□□□□□ -2.56
HMGB1P28-201ENST00000507778 SMIM5Q71RC9 77 aa-0.92□□□□□ -2.56
HMGB1P28-201ENST00000507778 CENPFP49454 3210 aa-0.93□□□□□ -2.56
HMGB1P28-201ENST00000507778 VCANP13611 3396 aa-0.93□□□□□ -2.56
HMGB1P28-201ENST00000507778 MROH2BQ7Z745 1585 aa-0.94□□□□□ -2.56
HMGB1P28-201ENST00000507778 RHPN1-AS1Q9BWJ2 59 aa-0.94□□□□□ -2.56
HMGB1P28-201ENST00000507778 CMC2Q9NRP2 79 aa-0.95□□□□□ -2.56
HMGB1P28-201ENST00000507778 TOP2AP11388 1531 aaKnown RBP-0.95□□□□□ -2.56
HMGB1P28-201ENST00000507778 ATP7AQ04656 1500 aa-0.96□□□□□ -2.56
HMGB1P28-201ENST00000507778 IQGAP2Q13576 1575 aa-0.96□□□□□ -2.56
HMGB1P28-201ENST00000507778 RPL39P62891 51 aaKnown RBP-0.97□□□□□ -2.56
HMGB1P28-201ENST00000507778 KRTAP19-2Q3LHN2 52 aa-0.97□□□□□ -2.56
HMGB1P28-201ENST00000507778 LINC01590Q5TEZ4 76 aa-0.97□□□□□ -2.56
HMGB1P28-201ENST00000507778 CDH23Q9H251 3354 aa-0.97□□□□□ -2.56
HMGB1P28-201ENST00000507778 SAMD9LQ8IVG5 1584 aa-0.98□□□□□ -2.57
HMGB1P28-201ENST00000507778 DEFB104AQ8WTQ1 72 aa-0.98□□□□□ -2.57
HMGB1P28-201ENST00000507778 VPS13AQ96RL7 3174 aa-1□□□□□ -2.57
HMGB1P28-201ENST00000507778 RPL39LQ96EH5 51 aaKnown RBP-1□□□□□ -2.57
HMGB1P28-201ENST00000507778 CD52P31358 61 aa-1.02□□□□□ -2.57
HMGB1P28-201ENST00000507778 DEFB124Q8NES8 71 aa-1.02□□□□□ -2.57
HMGB1P28-201ENST00000507778 SMIM31A0A1B0GVY4 71 aa-1.04□□□□□ -2.58
HMGB1P28-201ENST00000507778 LINC01556Q5JQF7 62 aa-1.05□□□□□ -2.58
HMGB1P28-201ENST00000507778 UTRNP46939 3433 aa-1.05□□□□□ -2.58
HMGB1P28-201ENST00000507778 SNRPGP15A8MWD9 76 aa-1.09□□□□□ -2.58
HMGB1P28-201ENST00000507778 GCC2Q8IWJ2 1684 aa-1.1□□□□□ -2.58
HMGB1P28-201ENST00000507778 APELAP0DMC3 54 aa-1.12□□□□□ -2.59
HMGB1P28-201ENST00000507778 TOMM5Q8N4H5 51 aa-1.13□□□□□ -2.59
HMGB1P28-201ENST00000507778 A0A096LPF7 62 aa-1.14□□□□□ -2.59
HMGB1P28-201ENST00000507778 H3BUX3 64 aa-1.16□□□□□ -2.6
HMGB1P28-201ENST00000507778 HTN3P15516 51 aa-1.21□□□□□ -2.6
HMGB1P28-201ENST00000507778 GOLGB1Q14789 3259 aaKnown RBP-1.22□□□□□ -2.6
HMGB1P28-201ENST00000507778 K7EIM0 57 aa-1.22□□□□□ -2.6
HMGB1P28-201ENST00000507778 ARHGAP5-AS1Q96IT6 56 aa-1.22□□□□□ -2.6
HMGB1P28-201ENST00000507778 PRCDQ00LT1 54 aa-1.23□□□□□ -2.61
HMGB1P28-201ENST00000507778 TMEM167AQ8TBQ9 72 aa-1.25□□□□□ -2.61
HMGB1P28-201ENST00000507778 H3BSH0 61 aa-1.28□□□□□ -2.61
HMGB1P28-201ENST00000507778 RPL39P5Q59GN2 51 aa-1.3□□□□□ -2.62
HMGB1P28-201ENST00000507778 DEFB108AA8MXU0 73 aa-1.32□□□□□ -2.62
HMGB1P28-201ENST00000507778 SNRPGP62308 76 aaKnown RBP-1.34□□□□□ -2.62
HMGB1P28-201ENST00000507778 Q9Y3F1 56 aa-1.44□□□□□ -2.64
HMGB1P28-201ENST00000507778 DEFB108BQ8NET1 73 aa-1.45□□□□□ -2.64
HMGB1P28-201ENST00000507778 COX14Q96I36 57 aa-1.49□□□□□ -2.65
HMGB1P28-201ENST00000507778 STATHP02808 62 aa-1.58□□□□□ -2.66
Retrieved 77 of 20,778 RNA–protein pairs in 80.1 ms