RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 LCE4AQ5TA78 99 aa5.14□□□□□ -1.59
HMGCS1-203ENST00000507004 MT1MQ8N339 61 aa5.12□□□□□ -1.59
HMGCS1-203ENST00000507004 MT1LQ93083 61 aa5.12□□□□□ -1.59
HMGCS1-203ENST00000507004 A8MU10 97 aa5.11□□□□□ -1.59
HMGCS1-203ENST00000507004 ANAPC13Q9BS18 74 aa5.11□□□□□ -1.59
HMGCS1-203ENST00000507004 ATP5EP56381 51 aaPredicted RBP5.1□□□□□ -1.59
HMGCS1-203ENST00000507004 C10orf95Q9H7T3 257 aa5.07□□□□□ -1.6
HMGCS1-203ENST00000507004 LCE3AQ5TA76 89 aa5.06□□□□□ -1.6
HMGCS1-203ENST00000507004 LINC01558Q9Y6Z2 57 aa5□□□□□ -1.61
HMGCS1-203ENST00000507004 MT4P47944 62 aa4.99□□□□□ -1.61
HMGCS1-203ENST00000507004 KRTAP5-4Q6L8H1 288 aa4.97□□□□□ -1.61
HMGCS1-203ENST00000507004 CCDC179H3BU77 68 aa4.95□□□□□ -1.62
HMGCS1-203ENST00000507004 KRTAP19-4Q3LI73 84 aa4.95□□□□□ -1.62
HMGCS1-203ENST00000507004 HMCN1Q96RW7 5635 aa4.95□□□□□ -1.62
HMGCS1-203ENST00000507004 UQCR11O14957 56 aa4.94□□□□□ -1.62
HMGCS1-203ENST00000507004 KRTAP12-3P60328 96 aa4.93□□□□□ -1.62
HMGCS1-203ENST00000507004 KRTAP4-3Q9BYR4 195 aa4.91□□□□□ -1.62
HMGCS1-203ENST00000507004 KRTAP5-3Q6L8H2 238 aa4.9□□□□□ -1.63
HMGCS1-203ENST00000507004 TMEM258P61165 79 aa4.87□□□□□ -1.63
HMGCS1-203ENST00000507004 KRTAP25-1Q3LHN0 102 aa4.84□□□□□ -1.63
HMGCS1-203ENST00000507004 K7ERS5 55 aa4.82□□□□□ -1.64
HMGCS1-203ENST00000507004 AHNAK2Q8IVF2 5795 aa4.81□□□□□ -1.64
HMGCS1-203ENST00000507004 MIR22HGQ0VDD5 57 aa4.78□□□□□ -1.64
HMGCS1-203ENST00000507004 KRTAP5-10Q6L8G5 202 aa4.77□□□□□ -1.65
HMGCS1-203ENST00000507004 SPRR5A0A1B0GTR4 108 aa4.72□□□□□ -1.65
HMGCS1-203ENST00000507004 KRTAP5-5Q701N2 237 aaPredicted RBP4.71□□□□□ -1.66
HMGCS1-203ENST00000507004 V9GYY9 64 aa4.71□□□□□ -1.66
HMGCS1-203ENST00000507004 KRTAP12-4P60329 112 aa4.7□□□□□ -1.66
HMGCS1-203ENST00000507004 KRTAP23-1A1A580 65 aa4.69□□□□□ -1.66
HMGCS1-203ENST00000507004 KRTAP20-2Q3LI61 65 aa4.68□□□□□ -1.66
HMGCS1-203ENST00000507004 KRTAP5-7Q6L8G8 165 aa4.64□□□□□ -1.67
HMGCS1-203ENST00000507004 Q1T7F1 81 aa4.58□□□□□ -1.68
HMGCS1-203ENST00000507004 KRTAP15-1Q3LI76 137 aa4.58□□□□□ -1.68
HMGCS1-203ENST00000507004 PSPHP1O15172 72 aa4.56□□□□□ -1.68
HMGCS1-203ENST00000507004 SYNE1Q8NF91 8797 aaKnown RBP4.53□□□□□ -1.68
HMGCS1-203ENST00000507004 LCE3CQ5T5A8 94 aa4.52□□□□□ -1.69
HMGCS1-203ENST00000507004 CDC42SE1Q9NRR8 79 aa4.49□□□□□ -1.69
HMGCS1-203ENST00000507004 A6NED7 52 aa4.46□□□□□ -1.7
HMGCS1-203ENST00000507004 RPS28P62857 69 aaKnown RBP4.4□□□□□ -1.71
HMGCS1-203ENST00000507004 MT1AP04731 61 aa4.39□□□□□ -1.71
HMGCS1-203ENST00000507004 ROMO1P60602 79 aa4.38□□□□□ -1.71
HMGCS1-203ENST00000507004 KRTAP5-2Q701N4 177 aa4.33□□□□□ -1.72
HMGCS1-203ENST00000507004 KRTAP6-1Q3LI64 71 aa4.3□□□□□ -1.72
HMGCS1-203ENST00000507004 SVIPQ8NHG7 77 aa4.26□□□□□ -1.73
HMGCS1-203ENST00000507004 KRTAP9-6A8MVA2 160 aa4.17□□□□□ -1.74
HMGCS1-203ENST00000507004 KRTAP5-8O75690 187 aa4.14□□□□□ -1.75
HMGCS1-203ENST00000507004 KRTAP6-2Q3LI66 62 aa4.14□□□□□ -1.75
HMGCS1-203ENST00000507004 MT3P25713 68 aa4.05□□□□□ -1.76
HMGCS1-203ENST00000507004 OBSCNQ5VST9 7968 aa4.03□□□□□ -1.76
HMGCS1-203ENST00000507004 AHNAKQ09666 5890 aaKnown RBP4.01□□□□□ -1.77
HMGCS1-203ENST00000507004 MUC5ACP98088 5654 aa3.98□□□□□ -1.77
HMGCS1-203ENST00000507004 MUC5BQ9HC84 5762 aaPredicted RBP3.98□□□□□ -1.77
HMGCS1-203ENST00000507004 PCP4P48539 62 aa3.95□□□□□ -1.78
HMGCS1-203ENST00000507004 KRTAP5-1Q6L8H4 278 aa3.88□□□□□ -1.79
HMGCS1-203ENST00000507004 LCE1EQ5T753 118 aa3.77□□□□□ -1.81
HMGCS1-203ENST00000507004 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.65□□□□□ -1.83
HMGCS1-203ENST00000507004 BRK1Q8WUW1 75 aa3.65□□□□□ -1.83
HMGCS1-203ENST00000507004 LCE1CQ5T751 118 aa3.47□□□□□ -1.85
HMGCS1-203ENST00000507004 LCE1BQ5T7P3 118 aa3.47□□□□□ -1.85
HMGCS1-203ENST00000507004 KRTAP5-11Q6L8G4 156 aa3.47□□□□□ -1.85
HMGCS1-203ENST00000507004 PMAIP1Q13794 54 aa3.45□□□□□ -1.86
HMGCS1-203ENST00000507004 A0A0A0MQY5 61 aa3.42□□□□□ -1.86
HMGCS1-203ENST00000507004 PRAC1Q96KF2 57 aa3.26□□□□□ -1.89
HMGCS1-203ENST00000507004 LCE3DQ9BYE3 92 aa3.26□□□□□ -1.89
HMGCS1-203ENST00000507004 LCE1FQ5T754 118 aa3.15□□□□□ -1.91
HMGCS1-203ENST00000507004 LCE3EQ5T5B0 92 aa3.06□□□□□ -1.92
HMGCS1-203ENST00000507004 PRO0628Q9UI54 55 aa3.06□□□□□ -1.92
HMGCS1-203ENST00000507004 KRTAP4-4Q9BYR3 166 aa3.02□□□□□ -1.93
HMGCS1-203ENST00000507004 LUZP6Q538Z0 58 aa2.97□□□□□ -1.93
HMGCS1-203ENST00000507004 KTN1-AS1Q86SY8 53 aa2.97□□□□□ -1.93
HMGCS1-203ENST00000507004 KRTAP21-2Q3LI59 83 aa2.84□□□□□ -1.95
HMGCS1-203ENST00000507004 PHGR1C9JFL3 82 aa2.8□□□□□ -1.96
HMGCS1-203ENST00000507004 NDUFAF8A1L188 74 aa2.65□□□□□ -1.99
HMGCS1-203ENST00000507004 MUC19Q7Z5P9 8384 aa2.49□□□□□ -2.01
HMGCS1-203ENST00000507004 PRM1P04553 51 aa2.18□□□□□ -2.06
HMGCS1-203ENST00000507004 KRTAP21-1Q3LI58 79 aa2.17□□□□□ -2.06
HMGCS1-203ENST00000507004 MUC16Q8WXI7 14507 aa1.77□□□□□ -2.13
HMGCS1-203ENST00000507004 INE1O15225 51 aa1.75□□□□□ -2.13
Retrieved 78 of 20,778 RNA–protein pairs in 77.7 ms