RNA–Protein interactions for RNA: ENST00000502781.5

LSM6-202, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 1,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-202ENST00000502781 KRTAP19-3Q7Z4W3 81 aa9.15□□□□□ -0.94
LSM6-202ENST00000502781 LCE5AQ5TCM9 118 aa9.13□□□□□ -0.95
LSM6-202ENST00000502781 MT1GP13640 62 aa8.99□□□□□ -0.97
LSM6-202ENST00000502781 MT1LQ93083 61 aa8.99□□□□□ -0.97
LSM6-202ENST00000502781 KRTAP2-2Q9BYT5 123 aa8.96□□□□□ -0.98
LSM6-202ENST00000502781 KRTAP2-1Q9BYU5 128 aa8.96□□□□□ -0.98
LSM6-202ENST00000502781 LCE3BQ5TA77 95 aa8.95□□□□□ -0.98
LSM6-202ENST00000502781 KRTAP12-3P60328 96 aa8.94□□□□□ -0.98
LSM6-202ENST00000502781 KRTAP23-1A1A580 65 aa8.9□□□□□ -0.98
LSM6-202ENST00000502781 ROMO1P60602 79 aa8.89□□□□□ -0.99
LSM6-202ENST00000502781 PP632Q6XCG6 107 aa8.86□□□□□ -0.99
LSM6-202ENST00000502781 MT1MQ8N339 61 aa8.84□□□□□ -0.99
LSM6-202ENST00000502781 DSTQ03001 7570 aaKnown RBP8.72□□□□□ -1.01
LSM6-202ENST00000502781 KRTAP4-12Q9BQ66 201 aa8.63□□□□□ -1.03
LSM6-202ENST00000502781 KRTAP4-3Q9BYR4 195 aa8.6□□□□□ -1.03
LSM6-202ENST00000502781 BRK1Q8WUW1 75 aa8.59□□□□□ -1.03
LSM6-202ENST00000502781 KRTAP4-7Q9BYR0 210 aa8.55□□□□□ -1.04
LSM6-202ENST00000502781 KRTAP19-4Q3LI73 84 aa8.51□□□□□ -1.05
LSM6-202ENST00000502781 KRTAP15-1Q3LI76 137 aa8.51□□□□□ -1.05
LSM6-202ENST00000502781 KRTAP9-9Q9BYP9 154 aa8.42□□□□□ -1.06
LSM6-202ENST00000502781 KRTAP9-4Q9BYQ2 154 aa8.42□□□□□ -1.06
LSM6-202ENST00000502781 LCE3CQ5T5A8 94 aa8.28□□□□□ -1.08
LSM6-202ENST00000502781 LCE4AQ5TA78 99 aa8.22□□□□□ -1.09
LSM6-202ENST00000502781 KRTAP5-4Q6L8H1 288 aa8.21□□□□□ -1.1
LSM6-202ENST00000502781 KRTAP4-9Q9BYQ8 210 aa8.2□□□□□ -1.1
LSM6-202ENST00000502781 PMAIP1Q13794 54 aa8.1□□□□□ -1.11
LSM6-202ENST00000502781 KRTAP5-5Q701N2 237 aaPredicted RBP8.1□□□□□ -1.11
LSM6-202ENST00000502781 LCE1DQ5T752 114 aa8.1□□□□□ -1.11
LSM6-202ENST00000502781 MT4P47944 62 aa8.02□□□□□ -1.13
LSM6-202ENST00000502781 HMCN1Q96RW7 5635 aa7.96□□□□□ -1.13
LSM6-202ENST00000502781 PRO0628Q9UI54 55 aa7.9□□□□□ -1.14
LSM6-202ENST00000502781 GPR98Q8WXG9 6306 aa7.89□□□□□ -1.15
LSM6-202ENST00000502781 KRTAP9-6A8MVA2 160 aa7.84□□□□□ -1.16
LSM6-202ENST00000502781 SYNE1Q8NF91 8797 aaKnown RBP7.73□□□□□ -1.17
LSM6-202ENST00000502781 PRAC1Q96KF2 57 aa7.72□□□□□ -1.17
LSM6-202ENST00000502781 KRTAP12-4P60329 112 aa7.71□□□□□ -1.17
LSM6-202ENST00000502781 SPRR5A0A1B0GTR4 108 aa7.71□□□□□ -1.18
LSM6-202ENST00000502781 KRTAP20-2Q3LI61 65 aa7.68□□□□□ -1.18
LSM6-202ENST00000502781 MT1AP04731 61 aa7.66□□□□□ -1.18
LSM6-202ENST00000502781 KRTAP4-2Q9BYR5 136 aa7.64□□□□□ -1.19
LSM6-202ENST00000502781 AHNAK2Q8IVF2 5795 aa7.59□□□□□ -1.19
LSM6-202ENST00000502781 KRTAP6-1Q3LI64 71 aa7.58□□□□□ -1.2
LSM6-202ENST00000502781 H3BS24 57 aa7.56□□□□□ -1.2
LSM6-202ENST00000502781 KRTAP4-11Q9BYQ6 195 aa7.52□□□□□ -1.21
LSM6-202ENST00000502781 KRTAP5-3Q6L8H2 238 aa7.46□□□□□ -1.21
LSM6-202ENST00000502781 KTN1-AS1Q86SY8 53 aa7.45□□□□□ -1.22
LSM6-202ENST00000502781 KRTAP5-10Q6L8G5 202 aa7.33□□□□□ -1.24
LSM6-202ENST00000502781 KRTAP5-2Q701N4 177 aa7.27□□□□□ -1.25
LSM6-202ENST00000502781 KRTAP6-2Q3LI66 62 aa7.13□□□□□ -1.27
LSM6-202ENST00000502781 KRTAP5-7Q6L8G8 165 aa7.04□□□□□ -1.28
LSM6-202ENST00000502781 SVIPQ8NHG7 77 aa7.01□□□□□ -1.29
LSM6-202ENST00000502781 MT3P25713 68 aa6.96□□□□□ -1.29
LSM6-202ENST00000502781 OBSCNQ5VST9 7968 aa6.69□□□□□ -1.34
LSM6-202ENST00000502781 KRTAP5-8O75690 187 aa6.67□□□□□ -1.34
LSM6-202ENST00000502781 KRTAP5-1Q6L8H4 278 aa6.43□□□□□ -1.38
LSM6-202ENST00000502781 LUZP6Q538Z0 58 aa6.41□□□□□ -1.38
LSM6-202ENST00000502781 LCE1EQ5T753 118 aa6.32□□□□□ -1.4
LSM6-202ENST00000502781 MUC5ACP98088 5654 aa6.29□□□□□ -1.4
LSM6-202ENST00000502781 AHNAKQ09666 5890 aaKnown RBP6.25□□□□□ -1.41
LSM6-202ENST00000502781 MUC5BQ9HC84 5762 aaPredicted RBP6.22□□□□□ -1.41
LSM6-202ENST00000502781 LCE3DQ9BYE3 92 aa6.06□□□□□ -1.44
LSM6-202ENST00000502781 LCE1CQ5T751 118 aa5.86□□□□□ -1.47
LSM6-202ENST00000502781 LCE1BQ5T7P3 118 aa5.86□□□□□ -1.47
LSM6-202ENST00000502781 LCE3EQ5T5B0 92 aa5.77□□□□□ -1.49
LSM6-202ENST00000502781 NDUFAF8A1L188 74 aa5.6□□□□□ -1.51
LSM6-202ENST00000502781 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.42□□□□□ -1.54
LSM6-202ENST00000502781 KRTAP5-11Q6L8G4 156 aa5.28□□□□□ -1.56
LSM6-202ENST00000502781 LCE1FQ5T754 118 aa5.03□□□□□ -1.6
LSM6-202ENST00000502781 KRTAP21-2Q3LI59 83 aa5.01□□□□□ -1.61
LSM6-202ENST00000502781 A0A0A0MQY5 61 aa4.82□□□□□ -1.64
LSM6-202ENST00000502781 INE1O15225 51 aa4.63□□□□□ -1.67
LSM6-202ENST00000502781 PRM1P04553 51 aa4.56□□□□□ -1.68
LSM6-202ENST00000502781 PHGR1C9JFL3 82 aa4.53□□□□□ -1.68
LSM6-202ENST00000502781 KRTAP4-4Q9BYR3 166 aa4.46□□□□□ -1.7
LSM6-202ENST00000502781 MUC19Q7Z5P9 8384 aa4.12□□□□□ -1.75
LSM6-202ENST00000502781 KRTAP21-1Q3LI58 79 aa3.24□□□□□ -1.89
LSM6-202ENST00000502781 MUC16Q8WXI7 14507 aa2.93□□□□□ -1.94
Retrieved 77 of 20,778 RNA–protein pairs in 69.4 ms