RNA–Protein interactions for RNA: ENST00000497139.5

VEGFA-215, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 2,746 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-215ENST00000497139 LCE3BQ5TA77 95 aa4.44□□□□□ -1.7
VEGFA-215ENST00000497139 KRTAP4-7Q9BYR0 210 aa4.44□□□□□ -1.7
VEGFA-215ENST00000497139 KRTAP9-9Q9BYP9 154 aa4.38□□□□□ -1.71
VEGFA-215ENST00000497139 KRTAP9-4Q9BYQ2 154 aa4.38□□□□□ -1.71
VEGFA-215ENST00000497139 FSIP2Q5CZC0 6907 aa4.37□□□□□ -1.71
VEGFA-215ENST00000497139 KRTAP19-7Q3SYF9 63 aa4.35□□□□□ -1.71
VEGFA-215ENST00000497139 MT1LQ93083 61 aa4.29□□□□□ -1.72
VEGFA-215ENST00000497139 SSPOA2VEC9 5147 aa4.26□□□□□ -1.73
VEGFA-215ENST00000497139 KRTAP12-4P60329 112 aa4.24□□□□□ -1.73
VEGFA-215ENST00000497139 KRTAP4-2Q9BYR5 136 aa4.23□□□□□ -1.73
VEGFA-215ENST00000497139 MT1EP04732 61 aa4.21□□□□□ -1.74
VEGFA-215ENST00000497139 KRTAP4-12Q9BQ66 201 aa4.2□□□□□ -1.74
VEGFA-215ENST00000497139 LCE1DQ5T752 114 aa4.16□□□□□ -1.74
VEGFA-215ENST00000497139 KRTAP4-9Q9BYQ8 210 aa4.16□□□□□ -1.74
VEGFA-215ENST00000497139 KMT2DO14686 5537 aa4.14□□□□□ -1.75
VEGFA-215ENST00000497139 KRTAP19-6Q3LI70 58 aa4.12□□□□□ -1.75
VEGFA-215ENST00000497139 CRCT1Q9UGL9 99 aa4.11□□□□□ -1.75
VEGFA-215ENST00000497139 FCGBPQ9Y6R7 5405 aaPredicted RBP4.08□□□□□ -1.76
VEGFA-215ENST00000497139 LCE5AQ5TCM9 118 aa4.01□□□□□ -1.77
VEGFA-215ENST00000497139 KRTAP9-7A8MTY7 169 aa4.01□□□□□ -1.77
VEGFA-215ENST00000497139 MT1GP13640 62 aa3.97□□□□□ -1.77
VEGFA-215ENST00000497139 MT1AP04731 61 aa3.95□□□□□ -1.78
VEGFA-215ENST00000497139 MT1MQ8N339 61 aa3.9□□□□□ -1.79
VEGFA-215ENST00000497139 MACF1Q9UPN3 7388 aaKnown RBP3.89□□□□□ -1.79
VEGFA-215ENST00000497139 KRTAP4-3Q9BYR4 195 aa3.89□□□□□ -1.79
VEGFA-215ENST00000497139 KRTAP4-11Q9BYQ6 195 aa3.86□□□□□ -1.79
VEGFA-215ENST00000497139 KRTAP19-3Q7Z4W3 81 aa3.84□□□□□ -1.79
VEGFA-215ENST00000497139 LCE4AQ5TA78 99 aa3.84□□□□□ -1.8
VEGFA-215ENST00000497139 SYNE2Q8WXH0 6885 aaKnown RBP3.82□□□□□ -1.8
VEGFA-215ENST00000497139 MUC12Q9UKN1 5478 aa3.81□□□□□ -1.8
VEGFA-215ENST00000497139 LCE3EQ5T5B0 92 aa3.8□□□□□ -1.8
VEGFA-215ENST00000497139 PRM1P04553 51 aa3.8□□□□□ -1.8
VEGFA-215ENST00000497139 LCE3DQ9BYE3 92 aa3.79□□□□□ -1.8
VEGFA-215ENST00000497139 KRTAP5-5Q701N2 237 aaPredicted RBP3.78□□□□□ -1.8
VEGFA-215ENST00000497139 SPRR2FQ96RM1 72 aa3.75□□□□□ -1.81
VEGFA-215ENST00000497139 KRTAP2-2Q9BYT5 123 aa3.71□□□□□ -1.82
VEGFA-215ENST00000497139 KRTAP6-3Q3LI67 103 aa3.69□□□□□ -1.82
VEGFA-215ENST00000497139 HMCN1Q96RW7 5635 aa3.67□□□□□ -1.82
VEGFA-215ENST00000497139 LCE1FQ5T754 118 aa3.63□□□□□ -1.83
VEGFA-215ENST00000497139 MDN1Q9NU22 5596 aa3.63□□□□□ -1.83
VEGFA-215ENST00000497139 KRTAP5-9P26371 169 aa3.6□□□□□ -1.83
VEGFA-215ENST00000497139 KRTAP6-1Q3LI64 71 aa3.6□□□□□ -1.83
VEGFA-215ENST00000497139 LCE1AQ5T7P2 110 aa3.57□□□□□ -1.84
VEGFA-215ENST00000497139 SYNE1Q8NF91 8797 aaKnown RBP3.55□□□□□ -1.84
VEGFA-215ENST00000497139 DSTQ03001 7570 aaKnown RBP3.55□□□□□ -1.84
VEGFA-215ENST00000497139 SPRR2EP22531 72 aa3.55□□□□□ -1.84
VEGFA-215ENST00000497139 SPRR2BP35325 72 aa3.55□□□□□ -1.84
VEGFA-215ENST00000497139 SPRR2AP35326 72 aa3.55□□□□□ -1.84
VEGFA-215ENST00000497139 LCE1EQ5T753 118 aa3.55□□□□□ -1.84
VEGFA-215ENST00000497139 KRTAP6-2Q3LI66 62 aa3.54□□□□□ -1.84
VEGFA-215ENST00000497139 KRTAP20-1Q3LI63 56 aa3.5□□□□□ -1.85
VEGFA-215ENST00000497139 MT3P25713 68 aa3.44□□□□□ -1.86
VEGFA-215ENST00000497139 SPRR2DP22532 72 aa3.4□□□□□ -1.86
VEGFA-215ENST00000497139 NEBP20929 6669 aa3.35□□□□□ -1.87
VEGFA-215ENST00000497139 GPR98Q8WXG9 6306 aa3.17□□□□□ -1.9
VEGFA-215ENST00000497139 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.17□□□□□ -1.9
VEGFA-215ENST00000497139 OBSCNQ5VST9 7968 aa3.03□□□□□ -1.92
VEGFA-215ENST00000497139 MUC5BQ9HC84 5762 aaPredicted RBP3.03□□□□□ -1.93
VEGFA-215ENST00000497139 MT4P47944 62 aa3.02□□□□□ -1.93
VEGFA-215ENST00000497139 KRTAP5-4Q6L8H1 288 aa3.02□□□□□ -1.93
VEGFA-215ENST00000497139 KRTAP20-2Q3LI61 65 aa2.85□□□□□ -1.95
VEGFA-215ENST00000497139 KRTAP5-7Q6L8G8 165 aa2.84□□□□□ -1.96
VEGFA-215ENST00000497139 KRTAP5-2Q701N4 177 aa2.82□□□□□ -1.96
VEGFA-215ENST00000497139 KRTAP5-10Q6L8G5 202 aa2.76□□□□□ -1.97
VEGFA-215ENST00000497139 MUC19Q7Z5P9 8384 aa2.76□□□□□ -1.97
VEGFA-215ENST00000497139 MUC5ACP98088 5654 aa2.68□□□□□ -1.98
VEGFA-215ENST00000497139 AHNAK2Q8IVF2 5795 aa2.67□□□□□ -1.98
VEGFA-215ENST00000497139 KRTAP5-1Q6L8H4 278 aa2.65□□□□□ -1.99
VEGFA-215ENST00000497139 AHNAKQ09666 5890 aaKnown RBP2.56□□□□□ -2
VEGFA-215ENST00000497139 KRTAP5-11Q6L8G4 156 aa2.56□□□□□ -2
VEGFA-215ENST00000497139 KRTAP4-4Q9BYR3 166 aa2.55□□□□□ -2
VEGFA-215ENST00000497139 KRTAP21-1Q3LI58 79 aa2.51□□□□□ -2.01
VEGFA-215ENST00000497139 LCE1BQ5T7P3 118 aa2.43□□□□□ -2.02
VEGFA-215ENST00000497139 LCE1CQ5T751 118 aa2.4□□□□□ -2.02
VEGFA-215ENST00000497139 KRTAP5-8O75690 187 aa2.38□□□□□ -2.03
VEGFA-215ENST00000497139 KRTAP21-2Q3LI59 83 aa2.33□□□□□ -2.04
VEGFA-215ENST00000497139 PHGR1C9JFL3 82 aa1.79□□□□□ -2.12
VEGFA-215ENST00000497139 MUC16Q8WXI7 14507 aa1.24□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 81.1 ms