RNA–Protein interactions for RNA: ENST00000489728.1

CPSF7-212, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 4

Gene CPSF7, Length 488 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-212ENST00000489728 KRTAP19-3Q7Z4W3 81 aa4.05□□□□□ -1.76
CPSF7-212ENST00000489728 LCE5AQ5TCM9 118 aa4.04□□□□□ -1.76
CPSF7-212ENST00000489728 CDC42SE1Q9NRR8 79 aa4.03□□□□□ -1.76
CPSF7-212ENST00000489728 KRTAP2-2Q9BYT5 123 aa4□□□□□ -1.77
CPSF7-212ENST00000489728 KRTAP2-1Q9BYU5 128 aa4□□□□□ -1.77
CPSF7-212ENST00000489728 MT1GP13640 62 aa3.99□□□□□ -1.77
CPSF7-212ENST00000489728 KRTAP23-1A1A580 65 aa3.98□□□□□ -1.77
CPSF7-212ENST00000489728 LCE3BQ5TA77 95 aa3.98□□□□□ -1.77
CPSF7-212ENST00000489728 PP632Q6XCG6 107 aa3.98□□□□□ -1.77
CPSF7-212ENST00000489728 MT1LQ93083 61 aa3.96□□□□□ -1.78
CPSF7-212ENST00000489728 KRTAP12-3P60328 96 aa3.95□□□□□ -1.78
CPSF7-212ENST00000489728 ROMO1P60602 79 aa3.92□□□□□ -1.78
CPSF7-212ENST00000489728 MT1MQ8N339 61 aa3.9□□□□□ -1.79
CPSF7-212ENST00000489728 KRTAP4-12Q9BQ66 201 aa3.87□□□□□ -1.79
CPSF7-212ENST00000489728 KRTAP19-4Q3LI73 84 aa3.85□□□□□ -1.79
CPSF7-212ENST00000489728 DSTQ03001 7570 aaKnown RBP3.82□□□□□ -1.8
CPSF7-212ENST00000489728 KRTAP9-9Q9BYP9 154 aa3.8□□□□□ -1.8
CPSF7-212ENST00000489728 KRTAP9-4Q9BYQ2 154 aa3.8□□□□□ -1.8
CPSF7-212ENST00000489728 KRTAP15-1Q3LI76 137 aa3.76□□□□□ -1.81
CPSF7-212ENST00000489728 BRK1Q8WUW1 75 aa3.75□□□□□ -1.81
CPSF7-212ENST00000489728 KRTAP4-3Q9BYR4 195 aa3.73□□□□□ -1.81
CPSF7-212ENST00000489728 KRTAP4-7Q9BYR0 210 aa3.71□□□□□ -1.82
CPSF7-212ENST00000489728 LCE4AQ5TA78 99 aa3.69□□□□□ -1.82
CPSF7-212ENST00000489728 LCE3CQ5T5A8 94 aa3.66□□□□□ -1.82
CPSF7-212ENST00000489728 LCE1DQ5T752 114 aa3.64□□□□□ -1.83
CPSF7-212ENST00000489728 KRTAP5-4Q6L8H1 288 aa3.64□□□□□ -1.83
CPSF7-212ENST00000489728 KRTAP4-9Q9BYQ8 210 aa3.6□□□□□ -1.83
CPSF7-212ENST00000489728 KRTAP5-5Q701N2 237 aaPredicted RBP3.58□□□□□ -1.84
CPSF7-212ENST00000489728 HMCN1Q96RW7 5635 aa3.54□□□□□ -1.84
CPSF7-212ENST00000489728 PMAIP1Q13794 54 aa3.54□□□□□ -1.84
CPSF7-212ENST00000489728 MT4P47944 62 aa3.53□□□□□ -1.84
CPSF7-212ENST00000489728 KRTAP4-2Q9BYR5 136 aa3.47□□□□□ -1.85
CPSF7-212ENST00000489728 SPRR5A0A1B0GTR4 108 aa3.46□□□□□ -1.86
CPSF7-212ENST00000489728 PRO0628Q9UI54 55 aa3.46□□□□□ -1.86
CPSF7-212ENST00000489728 KRTAP12-4P60329 112 aa3.45□□□□□ -1.86
CPSF7-212ENST00000489728 KRTAP9-6A8MVA2 160 aa3.4□□□□□ -1.87
CPSF7-212ENST00000489728 KRTAP20-2Q3LI61 65 aa3.4□□□□□ -1.87
CPSF7-212ENST00000489728 KRTAP4-11Q9BYQ6 195 aa3.4□□□□□ -1.87
CPSF7-212ENST00000489728 MT1AP04731 61 aa3.39□□□□□ -1.87
CPSF7-212ENST00000489728 GPR98Q8WXG9 6306 aa3.34□□□□□ -1.88
CPSF7-212ENST00000489728 AHNAK2Q8IVF2 5795 aa3.33□□□□□ -1.88
CPSF7-212ENST00000489728 KRTAP6-1Q3LI64 71 aa3.31□□□□□ -1.88
CPSF7-212ENST00000489728 PRAC1Q96KF2 57 aa3.31□□□□□ -1.88
CPSF7-212ENST00000489728 KRTAP5-3Q6L8H2 238 aa3.3□□□□□ -1.88
CPSF7-212ENST00000489728 KTN1-AS1Q86SY8 53 aa3.27□□□□□ -1.89
CPSF7-212ENST00000489728 SYNE1Q8NF91 8797 aaKnown RBP3.26□□□□□ -1.89
CPSF7-212ENST00000489728 KRTAP5-10Q6L8G5 202 aa3.25□□□□□ -1.89
CPSF7-212ENST00000489728 KRTAP5-2Q701N4 177 aa3.23□□□□□ -1.89
CPSF7-212ENST00000489728 KRTAP6-2Q3LI66 62 aa3.14□□□□□ -1.91
CPSF7-212ENST00000489728 KRTAP5-7Q6L8G8 165 aa3.13□□□□□ -1.91
CPSF7-212ENST00000489728 H3BS24 57 aa3.1□□□□□ -1.91
CPSF7-212ENST00000489728 MT3P25713 68 aa3.1□□□□□ -1.91
CPSF7-212ENST00000489728 SVIPQ8NHG7 77 aa3.07□□□□□ -1.92
CPSF7-212ENST00000489728 KRTAP5-8O75690 187 aa2.95□□□□□ -1.94
CPSF7-212ENST00000489728 OBSCNQ5VST9 7968 aa2.87□□□□□ -1.95
CPSF7-212ENST00000489728 LUZP6Q538Z0 58 aa2.86□□□□□ -1.95
CPSF7-212ENST00000489728 LCE1EQ5T753 118 aa2.84□□□□□ -1.95
CPSF7-212ENST00000489728 KRTAP5-1Q6L8H4 278 aa2.84□□□□□ -1.95
CPSF7-212ENST00000489728 MUC5ACP98088 5654 aa2.73□□□□□ -1.97
CPSF7-212ENST00000489728 MUC5BQ9HC84 5762 aaPredicted RBP2.7□□□□□ -1.98
CPSF7-212ENST00000489728 AHNAKQ09666 5890 aaKnown RBP2.68□□□□□ -1.98
CPSF7-212ENST00000489728 LCE3DQ9BYE3 92 aa2.68□□□□□ -1.98
CPSF7-212ENST00000489728 LCE1CQ5T751 118 aa2.62□□□□□ -1.99
CPSF7-212ENST00000489728 LCE1BQ5T7P3 118 aa2.62□□□□□ -1.99
CPSF7-212ENST00000489728 LCE3EQ5T5B0 92 aa2.55□□□□□ -2
CPSF7-212ENST00000489728 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.43□□□□□ -2.02
CPSF7-212ENST00000489728 NDUFAF8A1L188 74 aa2.4□□□□□ -2.03
CPSF7-212ENST00000489728 KRTAP5-11Q6L8G4 156 aa2.36□□□□□ -2.03
CPSF7-212ENST00000489728 LCE1FQ5T754 118 aa2.27□□□□□ -2.05
CPSF7-212ENST00000489728 KRTAP21-2Q3LI59 83 aa2.2□□□□□ -2.06
CPSF7-212ENST00000489728 A0A0A0MQY5 61 aa2.1□□□□□ -2.07
CPSF7-212ENST00000489728 INE1O15225 51 aa2.03□□□□□ -2.08
CPSF7-212ENST00000489728 PHGR1C9JFL3 82 aa2.02□□□□□ -2.09
CPSF7-212ENST00000489728 PRM1P04553 51 aa1.98□□□□□ -2.09
CPSF7-212ENST00000489728 KRTAP4-4Q9BYR3 166 aa1.93□□□□□ -2.1
CPSF7-212ENST00000489728 MUC19Q7Z5P9 8384 aa1.73□□□□□ -2.13
CPSF7-212ENST00000489728 KRTAP21-1Q3LI58 79 aa1.46□□□□□ -2.18
CPSF7-212ENST00000489728 MUC16Q8WXI7 14507 aa1.27□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 49.5 ms