RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 ROMO1P60602 79 aa7.13□□□□□ -1.27
LIME1-205ENST00000480139 KRTAP23-1A1A580 65 aa7.11□□□□□ -1.27
LIME1-205ENST00000480139 KRTAP12-3P60328 96 aa7.07□□□□□ -1.28
LIME1-205ENST00000480139 MT1GP13640 62 aa7.06□□□□□ -1.28
LIME1-205ENST00000480139 MT1LQ93083 61 aa7.06□□□□□ -1.28
LIME1-205ENST00000480139 PP632Q6XCG6 107 aa7.01□□□□□ -1.29
LIME1-205ENST00000480139 LCE3BQ5TA77 95 aa6.99□□□□□ -1.29
LIME1-205ENST00000480139 BRK1Q8WUW1 75 aa6.97□□□□□ -1.29
LIME1-205ENST00000480139 KRTAP2-2Q9BYT5 123 aa6.97□□□□□ -1.29
LIME1-205ENST00000480139 KRTAP2-1Q9BYU5 128 aa6.97□□□□□ -1.29
LIME1-205ENST00000480139 MT1MQ8N339 61 aa6.93□□□□□ -1.3
LIME1-205ENST00000480139 KRTAP19-4Q3LI73 84 aa6.78□□□□□ -1.32
LIME1-205ENST00000480139 KRTAP15-1Q3LI76 137 aa6.75□□□□□ -1.33
LIME1-205ENST00000480139 DSTQ03001 7570 aaKnown RBP6.75□□□□□ -1.33
LIME1-205ENST00000480139 KRTAP4-3Q9BYR4 195 aa6.7□□□□□ -1.34
LIME1-205ENST00000480139 KRTAP4-7Q9BYR0 210 aa6.68□□□□□ -1.34
LIME1-205ENST00000480139 PMAIP1Q13794 54 aa6.58□□□□□ -1.36
LIME1-205ENST00000480139 LCE3CQ5T5A8 94 aa6.56□□□□□ -1.36
LIME1-205ENST00000480139 PRO0628Q9UI54 55 aa6.46□□□□□ -1.38
LIME1-205ENST00000480139 LCE4AQ5TA78 99 aa6.44□□□□□ -1.38
LIME1-205ENST00000480139 KRTAP5-4Q6L8H1 288 aa6.41□□□□□ -1.38
LIME1-205ENST00000480139 KRTAP5-5Q701N2 237 aaPredicted RBP6.35□□□□□ -1.39
LIME1-205ENST00000480139 KRTAP4-9Q9BYQ8 210 aa6.35□□□□□ -1.39
LIME1-205ENST00000480139 LOC100996750A0A140TA64 210 aa6.31□□□□□ -1.4
LIME1-205ENST00000480139 LCE1DQ5T752 114 aa6.29□□□□□ -1.4
LIME1-205ENST00000480139 MT4P47944 62 aa6.25□□□□□ -1.41
LIME1-205ENST00000480139 PRAC1Q96KF2 57 aa6.21□□□□□ -1.42
LIME1-205ENST00000480139 HMCN1Q96RW7 5635 aa6.17□□□□□ -1.42
LIME1-205ENST00000480139 KRTAP9-6A8MVA2 160 aa6.16□□□□□ -1.42
LIME1-205ENST00000480139 KRTAP4-6Q9BYQ5 205 aa6.13□□□□□ -1.43
LIME1-205ENST00000480139 KTN1-AS1Q86SY8 53 aa6.09□□□□□ -1.43
LIME1-205ENST00000480139 KRTAP12-4P60329 112 aa6.06□□□□□ -1.44
LIME1-205ENST00000480139 SPRR5A0A1B0GTR4 108 aa6.05□□□□□ -1.44
LIME1-205ENST00000480139 MT1AP04731 61 aa6.02□□□□□ -1.45
LIME1-205ENST00000480139 KRTAP20-2Q3LI61 65 aa5.99□□□□□ -1.45
LIME1-205ENST00000480139 KRTAP6-1Q3LI64 71 aa5.93□□□□□ -1.46
LIME1-205ENST00000480139 SYNE1Q8NF91 8797 aaKnown RBP5.9□□□□□ -1.46
LIME1-205ENST00000480139 KRTAP5-3Q6L8H2 238 aa5.81□□□□□ -1.48
LIME1-205ENST00000480139 GPR98Q8WXG9 6306 aa5.77□□□□□ -1.49
LIME1-205ENST00000480139 KRTAP9-4Q9BYQ2 154 aa5.77□□□□□ -1.49
LIME1-205ENST00000480139 AHNAK2Q8IVF2 5795 aa5.74□□□□□ -1.49
LIME1-205ENST00000480139 SVIPQ8NHG7 77 aa5.73□□□□□ -1.49
LIME1-205ENST00000480139 KRTAP5-2Q701N4 177 aa5.69□□□□□ -1.5
LIME1-205ENST00000480139 KRTAP5-10Q6L8G5 202 aa5.66□□□□□ -1.5
LIME1-205ENST00000480139 KRTAP6-2Q3LI66 62 aa5.59□□□□□ -1.51
LIME1-205ENST00000480139 MT3P25713 68 aa5.49□□□□□ -1.53
LIME1-205ENST00000480139 KRTAP5-7Q6L8G8 165 aa5.39□□□□□ -1.55
LIME1-205ENST00000480139 KRTAP4-11Q9BYQ6 195 aa5.37□□□□□ -1.55
LIME1-205ENST00000480139 LUZP6Q538Z0 58 aa5.22□□□□□ -1.57
LIME1-205ENST00000480139 KRTAP5-8O75690 187 aa5.19□□□□□ -1.58
LIME1-205ENST00000480139 OBSCNQ5VST9 7968 aa5.1□□□□□ -1.59
LIME1-205ENST00000480139 KRTAP5-1Q6L8H4 278 aa5.01□□□□□ -1.61
LIME1-205ENST00000480139 LCE1EQ5T753 118 aa4.98□□□□□ -1.61
LIME1-205ENST00000480139 MUC5ACP98088 5654 aa4.84□□□□□ -1.63
LIME1-205ENST00000480139 KRTAP9-9Q9BYP9 154 aa4.83□□□□□ -1.64
LIME1-205ENST00000480139 LCE3DQ9BYE3 92 aa4.81□□□□□ -1.64
LIME1-205ENST00000480139 MUC5BQ9HC84 5762 aaPredicted RBP4.69□□□□□ -1.66
LIME1-205ENST00000480139 KRTAP4-2Q9BYR5 136 aa4.63□□□□□ -1.67
LIME1-205ENST00000480139 LCE1CQ5T751 118 aa4.61□□□□□ -1.67
LIME1-205ENST00000480139 LCE1BQ5T7P3 118 aa4.61□□□□□ -1.67
LIME1-205ENST00000480139 AHNAKQ09666 5890 aaKnown RBP4.61□□□□□ -1.67
LIME1-205ENST00000480139 LCE3EQ5T5B0 92 aa4.59□□□□□ -1.67
LIME1-205ENST00000480139 NDUFAF8A1L188 74 aa4.54□□□□□ -1.68
LIME1-205ENST00000480139 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.27□□□□□ -1.73
LIME1-205ENST00000480139 KRTAP5-11Q6L8G4 156 aa4.14□□□□□ -1.75
LIME1-205ENST00000480139 KRTAP4-12Q9BQ66 201 aa3.99□□□□□ -1.77
LIME1-205ENST00000480139 LCE1FQ5T754 118 aa3.95□□□□□ -1.78
LIME1-205ENST00000480139 KRTAP21-2Q3LI59 83 aa3.92□□□□□ -1.78
LIME1-205ENST00000480139 A0A0A0MQY5 61 aa3.81□□□□□ -1.8
LIME1-205ENST00000480139 INE1O15225 51 aa3.77□□□□□ -1.81
LIME1-205ENST00000480139 PRM1P04553 51 aa3.65□□□□□ -1.83
LIME1-205ENST00000480139 PHGR1C9JFL3 82 aa3.55□□□□□ -1.84
LIME1-205ENST00000480139 KRTAP4-4Q9BYR3 166 aa3.47□□□□□ -1.85
LIME1-205ENST00000480139 H3BS24 57 aa3.21□□□□□ -1.9
LIME1-205ENST00000480139 MUC19Q7Z5P9 8384 aa3.11□□□□□ -1.91
LIME1-205ENST00000480139 KRTAP21-1Q3LI58 79 aa2.49□□□□□ -2.01
LIME1-205ENST00000480139 MUC16Q8WXI7 14507 aa2.25□□□□□ -2.05
Retrieved 77 of 20,778 RNA–protein pairs in 7.5 ms