RNA–Protein interactions for RNA: ENST00000479596.5

CCNL1-222, Transcript of cyclin L1, human

TSL 3

Gene CCNL1, Length 883 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCNL1-222	ENST00000479596	KRTAP4-9	Q9BYQ8	210 aa		5.37	□□□□□ -1.55
CCNL1-222	ENST00000479596	C10orf95	Q9H7T3	257 aa		5.37	□□□□□ -1.55
CCNL1-222	ENST00000479596	MT1L	Q93083	61 aa		5.36	□□□□□ -1.55
CCNL1-222	ENST00000479596	LCE3A	Q5TA76	89 aa		5.35	□□□□□ -1.55
CCNL1-222	ENST00000479596	MT1M	Q8N339	61 aa		5.35	□□□□□ -1.55
CCNL1-222	ENST00000479596	PCP4	P48539	62 aa		5.33	□□□□□ -1.56
CCNL1-222	ENST00000479596	PP632	Q6XCG6	107 aa		5.33	□□□□□ -1.56
CCNL1-222	ENST00000479596	KRTAP15-1	Q3LI76	137 aa		5.32	□□□□□ -1.56
CCNL1-222	ENST00000479596	TNP1	P09430	55 aa		5.3	□□□□□ -1.56
CCNL1-222	ENST00000479596	ATP5E	P56381	51 aa	Predicted RBP	5.3	□□□□□ -1.56
CCNL1-222	ENST00000479596	PRR15L	Q9BU68	103 aa		5.27	□□□□□ -1.57
CCNL1-222	ENST00000479596	LINC01558	Q9Y6Z2	57 aa		5.27	□□□□□ -1.57
CCNL1-222	ENST00000479596	HMCN1	Q96RW7	5635 aa		5.27	□□□□□ -1.57
CCNL1-222	ENST00000479596	KRTAP4-7	Q9BYR0	210 aa		5.24	□□□□□ -1.57
CCNL1-222	ENST00000479596	KRTAP4-3	Q9BYR4	195 aa		5.24	□□□□□ -1.57
CCNL1-222	ENST00000479596	MT4	P47944	62 aa		5.16	□□□□□ -1.58
CCNL1-222	ENST00000479596	TMEM258	P61165	79 aa		5.15	□□□□□ -1.59
CCNL1-222	ENST00000479596	KRTAP5-4	Q6L8H1	288 aa		5.15	□□□□□ -1.59
CCNL1-222	ENST00000479596		A0A0A0MQY5	61 aa		5.13	□□□□□ -1.59
CCNL1-222	ENST00000479596	UQCR11	O14957	56 aa		5.12	□□□□□ -1.59
CCNL1-222	ENST00000479596	KRTAP12-3	P60328	96 aa		5.12	□□□□□ -1.59
CCNL1-222	ENST00000479596	KRTAP4-11	Q9BYQ6	195 aa		5.1	□□□□□ -1.59
CCNL1-222	ENST00000479596	AHNAK2	Q8IVF2	5795 aa		5.09	□□□□□ -1.59
CCNL1-222	ENST00000479596	MIR22HG	Q0VDD5	57 aa		5.01	□□□□□ -1.61
CCNL1-222	ENST00000479596	KRTAP4-2	Q9BYR5	136 aa		5	□□□□□ -1.61
CCNL1-222	ENST00000479596	KRTAP25-1	Q3LHN0	102 aa		4.98	□□□□□ -1.61
CCNL1-222	ENST00000479596	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.94	□□□□□ -1.62
CCNL1-222	ENST00000479596	KRTAP5-10	Q6L8G5	202 aa		4.91	□□□□□ -1.62
CCNL1-222	ENST00000479596	PSPHP1	O15172	72 aa		4.89	□□□□□ -1.63
CCNL1-222	ENST00000479596		K7ERS5	55 aa		4.86	□□□□□ -1.63
CCNL1-222	ENST00000479596		Q1T7F1	81 aa		4.86	□□□□□ -1.63
CCNL1-222	ENST00000479596	SYNE1	Q8NF91	8797 aa	Known RBP	4.85	□□□□□ -1.63
CCNL1-222	ENST00000479596	KRTAP20-2	Q3LI61	65 aa		4.85	□□□□□ -1.63
CCNL1-222	ENST00000479596		V9GYY9	64 aa		4.85	□□□□□ -1.63
CCNL1-222	ENST00000479596	SPRR5	A0A1B0GTR4	108 aa		4.8	□□□□□ -1.64
CCNL1-222	ENST00000479596	KRTAP5-3	Q6L8H2	238 aa		4.77	□□□□□ -1.65
CCNL1-222	ENST00000479596	RPS28	P62857	69 aa	Known RBP	4.75	□□□□□ -1.65
CCNL1-222	ENST00000479596	KRTAP12-4	P60329	112 aa		4.74	□□□□□ -1.65
CCNL1-222	ENST00000479596	KRTAP5-7	Q6L8G8	165 aa		4.72	□□□□□ -1.65
CCNL1-222	ENST00000479596	LCE3C	Q5T5A8	94 aa		4.71	□□□□□ -1.66
CCNL1-222	ENST00000479596		A6NED7	52 aa		4.69	□□□□□ -1.66
CCNL1-222	ENST00000479596	CDC42SE1	Q9NRR8	79 aa		4.64	□□□□□ -1.67
CCNL1-222	ENST00000479596	ROMO1	P60602	79 aa		4.58	□□□□□ -1.68
CCNL1-222	ENST00000479596	MT1A	P04731	61 aa		4.55	□□□□□ -1.68
CCNL1-222	ENST00000479596	KRTAP6-1	Q3LI64	71 aa		4.54	□□□□□ -1.68
CCNL1-222	ENST00000479596	KRTAP9-6	A8MVA2	160 aa		4.51	□□□□□ -1.69
CCNL1-222	ENST00000479596	KRTAP5-2	Q701N4	177 aa		4.51	□□□□□ -1.69
CCNL1-222	ENST00000479596	KRTAP6-2	Q3LI66	62 aa		4.34	□□□□□ -1.71
CCNL1-222	ENST00000479596	KRTAP5-8	O75690	187 aa		4.3	□□□□□ -1.72
CCNL1-222	ENST00000479596	PRAC1	Q96KF2	57 aa		4.24	□□□□□ -1.73
CCNL1-222	ENST00000479596	OBSCN	Q5VST9	7968 aa		4.23	□□□□□ -1.73
CCNL1-222	ENST00000479596	MUC5B	Q9HC84	5762 aa	Predicted RBP	4.23	□□□□□ -1.73
CCNL1-222	ENST00000479596	AHNAK	Q09666	5890 aa	Known RBP	4.23	□□□□□ -1.73
CCNL1-222	ENST00000479596	BRK1	Q8WUW1	75 aa		4.19	□□□□□ -1.74
CCNL1-222	ENST00000479596	MUC5AC	P98088	5654 aa		4.17	□□□□□ -1.74
CCNL1-222	ENST00000479596	MT3	P25713	68 aa		4.16	□□□□□ -1.74
CCNL1-222	ENST00000479596	KRTAP5-1	Q6L8H4	278 aa		4.05	□□□□□ -1.76
CCNL1-222	ENST00000479596	PRO0628	Q9UI54	55 aa		4.04	□□□□□ -1.76
CCNL1-222	ENST00000479596	NDUFAF8	A1L188	74 aa		4.01	□□□□□ -1.77
CCNL1-222	ENST00000479596	PMAIP1	Q13794	54 aa		4.01	□□□□□ -1.77
CCNL1-222	ENST00000479596	LCE1E	Q5T753	118 aa		3.82	□□□□□ -1.8
CCNL1-222	ENST00000479596	LCE1F	Q5T754	118 aa		3.8	□□□□□ -1.8
CCNL1-222	ENST00000479596	KTN1-AS1	Q86SY8	53 aa		3.76	□□□□□ -1.81
CCNL1-222	ENST00000479596	LCE1B	Q5T7P3	118 aa		3.59	□□□□□ -1.83
CCNL1-222	ENST00000479596	LCE1C	Q5T751	118 aa		3.56	□□□□□ -1.84
CCNL1-222	ENST00000479596	KRTAP5-11	Q6L8G4	156 aa		3.44	□□□□□ -1.86
CCNL1-222	ENST00000479596	LCE3D	Q9BYE3	92 aa		3.37	□□□□□ -1.87
CCNL1-222	ENST00000479596	LCE3E	Q5T5B0	92 aa		3.26	□□□□□ -1.89
CCNL1-222	ENST00000479596	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.25	□□□□□ -1.89
CCNL1-222	ENST00000479596	LUZP6	Q538Z0	58 aa		3.23	□□□□□ -1.89
CCNL1-222	ENST00000479596	KRTAP21-2	Q3LI59	83 aa		3.01	□□□□□ -1.93
CCNL1-222	ENST00000479596	PHGR1	C9JFL3	82 aa		2.83	□□□□□ -1.96
CCNL1-222	ENST00000479596	KRTAP4-4	Q9BYR3	166 aa		2.74	□□□□□ -1.97
CCNL1-222	ENST00000479596	MUC19	Q7Z5P9	8384 aa		2.62	□□□□□ -1.99
CCNL1-222	ENST00000479596	INE1	O15225	51 aa		2.47	□□□□□ -2.01
CCNL1-222	ENST00000479596	PRM1	P04553	51 aa		2.35	□□□□□ -2.03
CCNL1-222	ENST00000479596	KRTAP21-1	Q3LI58	79 aa		2.14	□□□□□ -2.07
CCNL1-222	ENST00000479596	MUC16	Q8WXI7	14507 aa		1.84	□□□□□ -2.12

Retrieved 78 of 20,778 RNA–protein pairs in 113.1 ms