RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, human

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VARS-223	ENST00000474643	C10orf95	Q9H7T3	257 aa		5.73	□□□□□ -1.49
VARS-223	ENST00000474643	TNP1	P09430	55 aa		5.69	□□□□□ -1.5
VARS-223	ENST00000474643	KRTAP25-1	Q3LHN0	102 aa		5.63	□□□□□ -1.51
VARS-223	ENST00000474643	MT1E	P04732	61 aa		5.62	□□□□□ -1.51
VARS-223	ENST00000474643	KRTAP19-7	Q3SYF9	63 aa		5.61	□□□□□ -1.51
VARS-223	ENST00000474643	KRTAP19-3	Q7Z4W3	81 aa		5.61	□□□□□ -1.51
VARS-223	ENST00000474643	DST	Q03001	7570 aa	Known RBP	5.61	□□□□□ -1.51
VARS-223	ENST00000474643	LCE5A	Q5TCM9	118 aa		5.6	□□□□□ -1.51
VARS-223	ENST00000474643	ROMO1	P60602	79 aa		5.58	□□□□□ -1.52
VARS-223	ENST00000474643	KRTAP23-1	A1A580	65 aa		5.53	□□□□□ -1.52
VARS-223	ENST00000474643	KRTAP19-5	Q3LI72	72 aa		5.53	□□□□□ -1.52
VARS-223	ENST00000474643	PP632	Q6XCG6	107 aa		5.52	□□□□□ -1.53
VARS-223	ENST00000474643	LCE3A	Q5TA76	89 aa		5.51	□□□□□ -1.53
VARS-223	ENST00000474643	KRTAP4-9	Q9BYQ8	210 aa		5.5	□□□□□ -1.53
VARS-223	ENST00000474643	MT1G	P13640	62 aa		5.47	□□□□□ -1.53
VARS-223	ENST00000474643	PRAC1	Q96KF2	57 aa		5.45	□□□□□ -1.54
VARS-223	ENST00000474643	GPR98	Q8WXG9	6306 aa		5.44	□□□□□ -1.54
VARS-223	ENST00000474643	MT1M	Q8N339	61 aa		5.36	□□□□□ -1.55
VARS-223	ENST00000474643	LCE1D	Q5T752	114 aa		5.34	□□□□□ -1.55
VARS-223	ENST00000474643	MT1L	Q93083	61 aa		5.34	□□□□□ -1.55
VARS-223	ENST00000474643	MT4	P47944	62 aa		5.33	□□□□□ -1.56
VARS-223	ENST00000474643	LCE4A	Q5TA78	99 aa		5.33	□□□□□ -1.56
VARS-223	ENST00000474643	KRTAP12-3	P60328	96 aa		5.31	□□□□□ -1.56
VARS-223	ENST00000474643	HMCN1	Q96RW7	5635 aa		5.23	□□□□□ -1.57
VARS-223	ENST00000474643	KRTAP4-3	Q9BYR4	195 aa		5.23	□□□□□ -1.57
VARS-223	ENST00000474643	KRTAP19-4	Q3LI73	84 aa		5.21	□□□□□ -1.58
VARS-223	ENST00000474643	KRTAP5-4	Q6L8H1	288 aa		5.11	□□□□□ -1.59
VARS-223	ENST00000474643	KRTAP15-1	Q3LI76	137 aa		5.1	□□□□□ -1.59
VARS-223	ENST00000474643	KRTAP4-6	Q9BYQ5	205 aa		5.08	□□□□□ -1.6
VARS-223	ENST00000474643	KRTAP4-7	Q9BYR0	210 aa		5.08	□□□□□ -1.6
VARS-223	ENST00000474643	AHNAK2	Q8IVF2	5795 aa		5.07	□□□□□ -1.6
VARS-223	ENST00000474643	KRTAP5-10	Q6L8G5	202 aa		4.97	□□□□□ -1.61
VARS-223	ENST00000474643	LCE3C	Q5T5A8	94 aa		4.92	□□□□□ -1.62
VARS-223	ENST00000474643	KRTAP12-4	P60329	112 aa		4.91	□□□□□ -1.62
VARS-223	ENST00000474643	KRTAP20-2	Q3LI61	65 aa		4.89	□□□□□ -1.63
VARS-223	ENST00000474643	KRTAP5-3	Q6L8H2	238 aa		4.86	□□□□□ -1.63
VARS-223	ENST00000474643	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.86	□□□□□ -1.63
VARS-223	ENST00000474643	SPRR5	A0A1B0GTR4	108 aa		4.85	□□□□□ -1.63
VARS-223	ENST00000474643	LOC100996750	A0A140TA64	210 aa		4.82	□□□□□ -1.64
VARS-223	ENST00000474643	KRTAP5-7	Q6L8G8	165 aa		4.81	□□□□□ -1.64
VARS-223	ENST00000474643	SYNE1	Q8NF91	8797 aa	Known RBP	4.68	□□□□□ -1.66
VARS-223	ENST00000474643	LUZP6	Q538Z0	58 aa		4.62	□□□□□ -1.67
VARS-223	ENST00000474643	KRTAP9-6	A8MVA2	160 aa		4.56	□□□□□ -1.68
VARS-223	ENST00000474643	MT1A	P04731	61 aa		4.55	□□□□□ -1.68
VARS-223	ENST00000474643	NDUFAF8	A1L188	74 aa		4.54	□□□□□ -1.68
VARS-223	ENST00000474643	KRTAP6-1	Q3LI64	71 aa		4.52	□□□□□ -1.69
VARS-223	ENST00000474643	KRTAP4-11	Q9BYQ6	195 aa		4.5	□□□□□ -1.69
VARS-223	ENST00000474643		H3BS24	57 aa		4.46	□□□□□ -1.7
VARS-223	ENST00000474643	KRTAP5-2	Q701N4	177 aa		4.45	□□□□□ -1.7
VARS-223	ENST00000474643	KRTAP9-4	Q9BYQ2	154 aa		4.4	□□□□□ -1.71
VARS-223	ENST00000474643	KRTAP6-2	Q3LI66	62 aa		4.38	□□□□□ -1.71
VARS-223	ENST00000474643	KRTAP5-8	O75690	187 aa		4.31	□□□□□ -1.72
VARS-223	ENST00000474643	OBSCN	Q5VST9	7968 aa		4.26	□□□□□ -1.73
VARS-223	ENST00000474643		A0A0A0MQY5	61 aa		4.24	□□□□□ -1.73
VARS-223	ENST00000474643	KRTAP9-9	Q9BYP9	154 aa		4.22	□□□□□ -1.73
VARS-223	ENST00000474643	MT3	P25713	68 aa		4.21	□□□□□ -1.74
VARS-223	ENST00000474643	MUC5B	Q9HC84	5762 aa	Predicted RBP	4.2	□□□□□ -1.74
VARS-223	ENST00000474643	AHNAK	Q09666	5890 aa	Known RBP	4.2	□□□□□ -1.74
VARS-223	ENST00000474643	MUC5AC	P98088	5654 aa		4.19	□□□□□ -1.74
VARS-223	ENST00000474643	KRTAP5-1	Q6L8H4	278 aa		4.01	□□□□□ -1.77
VARS-223	ENST00000474643	INE1	O15225	51 aa		3.94	□□□□□ -1.78
VARS-223	ENST00000474643	LCE1E	Q5T753	118 aa		3.84	□□□□□ -1.79
VARS-223	ENST00000474643	LCE1B	Q5T7P3	118 aa		3.72	□□□□□ -1.81
VARS-223	ENST00000474643	LCE3D	Q9BYE3	92 aa		3.64	□□□□□ -1.83
VARS-223	ENST00000474643	KRTAP4-2	Q9BYR5	136 aa		3.6	□□□□□ -1.83
VARS-223	ENST00000474643	LCE1C	Q5T751	118 aa		3.56	□□□□□ -1.84
VARS-223	ENST00000474643	LCE3E	Q5T5B0	92 aa		3.5	□□□□□ -1.85
VARS-223	ENST00000474643	KRTAP4-12	Q9BQ66	201 aa		3.39	□□□□□ -1.87
VARS-223	ENST00000474643	KRTAP5-11	Q6L8G4	156 aa		3.24	□□□□□ -1.89
VARS-223	ENST00000474643	LCE1F	Q5T754	118 aa		3.19	□□□□□ -1.9
VARS-223	ENST00000474643	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.19	□□□□□ -1.9
VARS-223	ENST00000474643	PHGR1	C9JFL3	82 aa		2.99	□□□□□ -1.93
VARS-223	ENST00000474643	KRTAP21-2	Q3LI59	83 aa		2.95	□□□□□ -1.94
VARS-223	ENST00000474643	PRM1	P04553	51 aa		2.82	□□□□□ -1.96
VARS-223	ENST00000474643	KRTAP4-4	Q9BYR3	166 aa		2.78	□□□□□ -1.96
VARS-223	ENST00000474643	MUC19	Q7Z5P9	8384 aa		2.64	□□□□□ -1.99
VARS-223	ENST00000474643	KRTAP21-1	Q3LI58	79 aa		2.26	□□□□□ -2.05
VARS-223	ENST00000474643	MUC16	Q8WXI7	14507 aa		1.79	□□□□□ -2.12

Retrieved 78 of 20,778 RNA–protein pairs in 8.6 ms