RNA–Protein interactions for RNA: ENST00000473684.5

TMEM39A-206, Transcript of transmembrane protein 39A, humanhuman

TSL 5

Gene TMEM39A, Length 3,043 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-206ENST00000473684 SMR3BP02814 79 aaPredicted RBP2.04□□□□□ -2.08
TMEM39A-206ENST00000473684 LRP2P98164 4655 aa2.04□□□□□ -2.08
TMEM39A-206ENST00000473684 UBR4Q5T4S7 5183 aa2.03□□□□□ -2.08
TMEM39A-206ENST00000473684 FLGP20930 4061 aaPredicted RBP2.03□□□□□ -2.08
TMEM39A-206ENST00000473684 KRTAP5-4Q6L8H1 288 aa2.01□□□□□ -2.09
TMEM39A-206ENST00000473684 KRTAP8-1Q8IUC2 63 aa2.01□□□□□ -2.09
TMEM39A-206ENST00000473684 LCE3AQ5TA76 89 aa2□□□□□ -2.09
TMEM39A-206ENST00000473684 RNF213Q63HN8 5207 aa2□□□□□ -2.09
TMEM39A-206ENST00000473684 KRTAP19-2Q3LHN2 52 aa1.99□□□□□ -2.09
TMEM39A-206ENST00000473684 LCE3DQ9BYE3 92 aa1.99□□□□□ -2.09
TMEM39A-206ENST00000473684 SSPOA2VEC9 5147 aa1.97□□□□□ -2.09
TMEM39A-206ENST00000473684 KRTAP6-3Q3LI67 103 aa1.94□□□□□ -2.1
TMEM39A-206ENST00000473684 KRTAP12-3P60328 96 aa1.91□□□□□ -2.1
TMEM39A-206ENST00000473684 KRTAP19-6Q3LI70 58 aa1.91□□□□□ -2.1
TMEM39A-206ENST00000473684 MT1HP80294 61 aa1.9□□□□□ -2.11
TMEM39A-206ENST00000473684 KRTAP2-3P0C7H8 128 aa1.88□□□□□ -2.11
TMEM39A-206ENST00000473684 KRTAP2-4Q9BYR9 128 aa1.88□□□□□ -2.11
TMEM39A-206ENST00000473684 KRTAP2-1Q9BYU5 128 aa1.88□□□□□ -2.11
TMEM39A-206ENST00000473684 KRTAP4-4Q9BYR3 166 aa1.87□□□□□ -2.11
TMEM39A-206ENST00000473684 LPAP08519 4548 aa1.87□□□□□ -2.11
TMEM39A-206ENST00000473684 SPRR2GQ9BYE4 73 aa1.85□□□□□ -2.11
TMEM39A-206ENST00000473684 KRTAP5-1Q6L8H4 278 aa1.84□□□□□ -2.12
TMEM39A-206ENST00000473684 KRTAP5-2Q701N4 177 aa1.82□□□□□ -2.12
TMEM39A-206ENST00000473684 M0R2T5 61 aa1.82□□□□□ -2.12
TMEM39A-206ENST00000473684 KRTAP20-1Q3LI63 56 aa1.81□□□□□ -2.12
TMEM39A-206ENST00000473684 KRTAP4-1Q9BYQ7 146 aa1.81□□□□□ -2.12
TMEM39A-206ENST00000473684 KRTAP5-5Q701N2 237 aaPredicted RBP1.77□□□□□ -2.13
TMEM39A-206ENST00000473684 MUC2Q02817 5179 aa1.77□□□□□ -2.13
TMEM39A-206ENST00000473684 KRTAP5-8O75690 187 aa1.75□□□□□ -2.13
TMEM39A-206ENST00000473684 AHNAKQ09666 5890 aaKnown RBP1.75□□□□□ -2.13
TMEM39A-206ENST00000473684 USH2AO75445 5202 aa1.72□□□□□ -2.13
TMEM39A-206ENST00000473684 KRTAP12-4P60329 112 aa1.72□□□□□ -2.13
TMEM39A-206ENST00000473684 MT2AP02795 61 aa1.72□□□□□ -2.13
TMEM39A-206ENST00000473684 KRTAP5-7Q6L8G8 165 aa1.72□□□□□ -2.13
TMEM39A-206ENST00000473684 MT1XP80297 61 aa1.71□□□□□ -2.14
TMEM39A-206ENST00000473684 KRTAP19-8Q3LI54 63 aa1.71□□□□□ -2.14
TMEM39A-206ENST00000473684 KRTAP19-5Q3LI72 72 aa1.71□□□□□ -2.14
TMEM39A-206ENST00000473684 OBSCNQ5VST9 7968 aa1.7□□□□□ -2.14
TMEM39A-206ENST00000473684 NEBP20929 6669 aa1.69□□□□□ -2.14
TMEM39A-206ENST00000473684 MT1FP04733 61 aa1.65□□□□□ -2.15
TMEM39A-206ENST00000473684 MT1BP07438 61 aa1.63□□□□□ -2.15
TMEM39A-206ENST00000473684 LCE1CQ5T751 118 aa1.63□□□□□ -2.15
TMEM39A-206ENST00000473684 LCE1BQ5T7P3 118 aa1.63□□□□□ -2.15
TMEM39A-206ENST00000473684 FCGBPQ9Y6R7 5405 aaPredicted RBP1.59□□□□□ -2.16
TMEM39A-206ENST00000473684 KRTAP4-3Q9BYR4 195 aa1.58□□□□□ -2.16
TMEM39A-206ENST00000473684 PRM1P04553 51 aa1.56□□□□□ -2.16
TMEM39A-206ENST00000473684 MT1EP04732 61 aa1.53□□□□□ -2.17
TMEM39A-206ENST00000473684 KRTAP19-7Q3SYF9 63 aa1.52□□□□□ -2.17
TMEM39A-206ENST00000473684 MT1AP04731 61 aa1.52□□□□□ -2.17
TMEM39A-206ENST00000473684 MT1LQ93083 61 aa1.52□□□□□ -2.17
TMEM39A-206ENST00000473684 KRTAP5-10Q6L8G5 202 aa1.5□□□□□ -2.17
TMEM39A-206ENST00000473684 FSIP2Q5CZC0 6907 aa1.46□□□□□ -2.18
TMEM39A-206ENST00000473684 AHNAK2Q8IVF2 5795 aa1.44□□□□□ -2.18
TMEM39A-206ENST00000473684 SPRR2EP22531 72 aa1.42□□□□□ -2.18
TMEM39A-206ENST00000473684 SPRR2BP35325 72 aa1.42□□□□□ -2.18
TMEM39A-206ENST00000473684 SPRR2AP35326 72 aa1.42□□□□□ -2.18
TMEM39A-206ENST00000473684 SYNE1Q8NF91 8797 aaKnown RBP1.42□□□□□ -2.18
TMEM39A-206ENST00000473684 SPRR2DP22532 72 aa1.42□□□□□ -2.18
TMEM39A-206ENST00000473684 MT1GP13640 62 aa1.41□□□□□ -2.18
TMEM39A-206ENST00000473684 KMT2DO14686 5537 aa1.41□□□□□ -2.18
TMEM39A-206ENST00000473684 MACF1Q9UPN3 7388 aaKnown RBP1.4□□□□□ -2.18
TMEM39A-206ENST00000473684 KRTAP6-2Q3LI66 62 aa1.4□□□□□ -2.19
TMEM39A-206ENST00000473684 SPRR2FQ96RM1 72 aa1.37□□□□□ -2.19
TMEM39A-206ENST00000473684 SYNE2Q8WXH0 6885 aaKnown RBP1.34□□□□□ -2.19
TMEM39A-206ENST00000473684 MT1MQ8N339 61 aa1.34□□□□□ -2.19
TMEM39A-206ENST00000473684 KRTAP19-3Q7Z4W3 81 aa1.3□□□□□ -2.2
TMEM39A-206ENST00000473684 MUC12Q9UKN1 5478 aa1.3□□□□□ -2.2
TMEM39A-206ENST00000473684 MDN1Q9NU22 5596 aa1.29□□□□□ -2.2
TMEM39A-206ENST00000473684 MUC5ACP98088 5654 aa1.28□□□□□ -2.2
TMEM39A-206ENST00000473684 KRTAP6-1Q3LI64 71 aa1.27□□□□□ -2.21
TMEM39A-206ENST00000473684 KRTAP20-2Q3LI61 65 aa1.23□□□□□ -2.21
TMEM39A-206ENST00000473684 MUC19Q7Z5P9 8384 aa1.23□□□□□ -2.21
TMEM39A-206ENST00000473684 DSTQ03001 7570 aaKnown RBP1.21□□□□□ -2.22
TMEM39A-206ENST00000473684 KRTAP21-2Q3LI59 83 aa1.14□□□□□ -2.23
TMEM39A-206ENST00000473684 KRTAP21-1Q3LI58 79 aa1.06□□□□□ -2.24
TMEM39A-206ENST00000473684 MT4P47944 62 aa1.05□□□□□ -2.24
TMEM39A-206ENST00000473684 PHGR1C9JFL3 82 aa0.75□□□□□ -2.29
TMEM39A-206ENST00000473684 MUC16Q8WXI7 14507 aa0.69□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 8.9 ms