RNA–Protein interactions for RNA: ENST00000473565.5

CLK1-210, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 3,208 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-210ENST00000473565 LCE3BQ5TA77 95 aa2.34□□□□□ -2.04
CLK1-210ENST00000473565 MACF1Q9UPN3 7388 aaKnown RBP2.3□□□□□ -2.04
CLK1-210ENST00000473565 MUC12Q9UKN1 5478 aa2.3□□□□□ -2.04
CLK1-210ENST00000473565 KRTAP19-7Q3SYF9 63 aa2.3□□□□□ -2.04
CLK1-210ENST00000473565 KRTAP4-12Q9BQ66 201 aa2.29□□□□□ -2.04
CLK1-210ENST00000473565 H3BS24 57 aa2.28□□□□□ -2.04
CLK1-210ENST00000473565 SYNE2Q8WXH0 6885 aaKnown RBP2.27□□□□□ -2.05
CLK1-210ENST00000473565 NDUFAF8A1L188 74 aa2.27□□□□□ -2.05
CLK1-210ENST00000473565 A0A0A0MQY5 61 aa2.25□□□□□ -2.05
CLK1-210ENST00000473565 CRCT1Q9UGL9 99 aa2.25□□□□□ -2.05
CLK1-210ENST00000473565 MT1EP04732 61 aa2.24□□□□□ -2.05
CLK1-210ENST00000473565 SPRR5A0A1B0GTR4 108 aa2.23□□□□□ -2.05
CLK1-210ENST00000473565 MT1LQ93083 61 aa2.21□□□□□ -2.06
CLK1-210ENST00000473565 LCE3CQ5T5A8 94 aa2.2□□□□□ -2.06
CLK1-210ENST00000473565 MDN1Q9NU22 5596 aa2.2□□□□□ -2.06
CLK1-210ENST00000473565 LUZP6Q538Z0 58 aa2.19□□□□□ -2.06
CLK1-210ENST00000473565 SPRR2FQ96RM1 72 aa2.19□□□□□ -2.06
CLK1-210ENST00000473565 DSTQ03001 7570 aaKnown RBP2.17□□□□□ -2.06
CLK1-210ENST00000473565 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.16□□□□□ -2.06
CLK1-210ENST00000473565 KRTAP4-3Q9BYR4 195 aa2.15□□□□□ -2.06
CLK1-210ENST00000473565 KRTAP4-11Q9BYQ6 195 aa2.15□□□□□ -2.07
CLK1-210ENST00000473565 KRTAP9-6A8MVA2 160 aa2.15□□□□□ -2.07
CLK1-210ENST00000473565 KRTAP19-3Q7Z4W3 81 aa2.13□□□□□ -2.07
CLK1-210ENST00000473565 MT1MQ8N339 61 aa2.11□□□□□ -2.07
CLK1-210ENST00000473565 MT1GP13640 62 aa2.09□□□□□ -2.07
CLK1-210ENST00000473565 LCE5AQ5TCM9 118 aa2.08□□□□□ -2.08
CLK1-210ENST00000473565 KRTAP5-9P26371 169 aa2.08□□□□□ -2.08
CLK1-210ENST00000473565 LCE1AQ5T7P2 110 aa2.06□□□□□ -2.08
CLK1-210ENST00000473565 SPRR2EP22531 72 aa2.04□□□□□ -2.08
CLK1-210ENST00000473565 SPRR2BP35325 72 aa2.04□□□□□ -2.08
CLK1-210ENST00000473565 SPRR2AP35326 72 aa2.04□□□□□ -2.08
CLK1-210ENST00000473565 KRTAP19-4Q3LI73 84 aa2.04□□□□□ -2.08
CLK1-210ENST00000473565 KRTAP6-3Q3LI67 103 aa2□□□□□ -2.09
CLK1-210ENST00000473565 SYNE1Q8NF91 8797 aaKnown RBP1.96□□□□□ -2.1
CLK1-210ENST00000473565 NEBP20929 6669 aa1.96□□□□□ -2.1
CLK1-210ENST00000473565 SPRR2DP22532 72 aa1.96□□□□□ -2.1
CLK1-210ENST00000473565 KRTAP9-7A8MTY7 169 aa1.94□□□□□ -2.1
CLK1-210ENST00000473565 KRTAP2-3P0C7H8 128 aa1.94□□□□□ -2.1
CLK1-210ENST00000473565 KRTAP2-4Q9BYR9 128 aa1.94□□□□□ -2.1
CLK1-210ENST00000473565 KRTAP2-1Q9BYU5 128 aa1.94□□□□□ -2.1
CLK1-210ENST00000473565 MUC5BQ9HC84 5762 aaPredicted RBP1.93□□□□□ -2.1
CLK1-210ENST00000473565 KRTAP6-1Q3LI64 71 aa1.89□□□□□ -2.11
CLK1-210ENST00000473565 KRTAP5-5Q701N2 237 aaPredicted RBP1.87□□□□□ -2.11
CLK1-210ENST00000473565 MT1AP04731 61 aa1.85□□□□□ -2.11
CLK1-210ENST00000473565 KRTAP5-4Q6L8H1 288 aa1.81□□□□□ -2.12
CLK1-210ENST00000473565 OBSCNQ5VST9 7968 aa1.8□□□□□ -2.12
CLK1-210ENST00000473565 INE1O15225 51 aa1.75□□□□□ -2.13
CLK1-210ENST00000473565 MT4P47944 62 aa1.75□□□□□ -2.13
CLK1-210ENST00000473565 KRTAP6-2Q3LI66 62 aa1.73□□□□□ -2.13
CLK1-210ENST00000473565 KRTAP12-4P60329 112 aa1.71□□□□□ -2.14
CLK1-210ENST00000473565 KRTAP20-1Q3LI63 56 aa1.71□□□□□ -2.14
CLK1-210ENST00000473565 KRTAP2-2Q9BYT5 123 aa1.71□□□□□ -2.14
CLK1-210ENST00000473565 LCE4AQ5TA78 99 aa1.67□□□□□ -2.14
CLK1-210ENST00000473565 KRTAP5-8O75690 187 aa1.66□□□□□ -2.14
CLK1-210ENST00000473565 MT3P25713 68 aa1.66□□□□□ -2.14
CLK1-210ENST00000473565 LCE3DQ9BYE3 92 aa1.66□□□□□ -2.14
CLK1-210ENST00000473565 KRTAP20-2Q3LI61 65 aa1.66□□□□□ -2.14
CLK1-210ENST00000473565 KRTAP5-2Q701N4 177 aa1.63□□□□□ -2.15
CLK1-210ENST00000473565 LCE3EQ5T5B0 92 aa1.61□□□□□ -2.15
CLK1-210ENST00000473565 AHNAK2Q8IVF2 5795 aa1.48□□□□□ -2.17
CLK1-210ENST00000473565 PRM1P04553 51 aa1.48□□□□□ -2.17
CLK1-210ENST00000473565 KRTAP4-4Q9BYR3 166 aa1.47□□□□□ -2.17
CLK1-210ENST00000473565 MUC5ACP98088 5654 aa1.45□□□□□ -2.18
CLK1-210ENST00000473565 GPR98Q8WXG9 6306 aa1.42□□□□□ -2.18
CLK1-210ENST00000473565 LCE1BQ5T7P3 118 aa1.42□□□□□ -2.18
CLK1-210ENST00000473565 KRTAP5-1Q6L8H4 278 aa1.39□□□□□ -2.19
CLK1-210ENST00000473565 LCE1EQ5T753 118 aa1.39□□□□□ -2.19
CLK1-210ENST00000473565 KRTAP5-10Q6L8G5 202 aa1.34□□□□□ -2.19
CLK1-210ENST00000473565 LCE1CQ5T751 118 aa1.32□□□□□ -2.2
CLK1-210ENST00000473565 KRTAP5-11Q6L8G4 156 aa1.29□□□□□ -2.2
CLK1-210ENST00000473565 KRTAP5-7Q6L8G8 165 aa1.28□□□□□ -2.2
CLK1-210ENST00000473565 AHNAKQ09666 5890 aaKnown RBP1.25□□□□□ -2.21
CLK1-210ENST00000473565 LCE1FQ5T754 118 aa1.23□□□□□ -2.21
CLK1-210ENST00000473565 KRTAP21-2Q3LI59 83 aa1.22□□□□□ -2.21
CLK1-210ENST00000473565 MUC19Q7Z5P9 8384 aa1.08□□□□□ -2.24
CLK1-210ENST00000473565 PHGR1C9JFL3 82 aa1□□□□□ -2.25
CLK1-210ENST00000473565 KRTAP21-1Q3LI58 79 aa0.87□□□□□ -2.27
CLK1-210ENST00000473565 MUC16Q8WXI7 14507 aa0.71□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 55.4 ms