RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 MT1MQ8N339 61 aa2.89□□□□□ -1.95
USP48-207ENST00000471752 SERP2Q8N6R1 65 aa2.89□□□□□ -1.95
USP48-207ENST00000471752 MT1GP13640 62 aa2.88□□□□□ -1.95
USP48-207ENST00000471752 MT4P47944 62 aa2.88□□□□□ -1.95
USP48-207ENST00000471752 KRTAP5-4Q6L8H1 288 aa2.88□□□□□ -1.95
USP48-207ENST00000471752 MT1LQ93083 61 aa2.88□□□□□ -1.95
USP48-207ENST00000471752 A0A1B0GU33 70 aa2.85□□□□□ -1.95
USP48-207ENST00000471752 A8MU10 97 aa2.85□□□□□ -1.95
USP48-207ENST00000471752 KRTAP5-1Q6L8H4 278 aa2.84□□□□□ -1.95
USP48-207ENST00000471752 LCE3AQ5TA76 89 aa2.83□□□□□ -1.96
USP48-207ENST00000471752 C10orf95Q9H7T3 257 aa2.83□□□□□ -1.96
USP48-207ENST00000471752 SERP1Q9Y6X1 66 aa2.82□□□□□ -1.96
USP48-207ENST00000471752 H7BZZ5 65 aa2.79□□□□□ -1.96
USP48-207ENST00000471752 SEC61GP60059 68 aa2.79□□□□□ -1.96
USP48-207ENST00000471752 KRTAP4-4Q9BYR3 166 aa2.79□□□□□ -1.96
USP48-207ENST00000471752 PP632Q6XCG6 107 aa2.78□□□□□ -1.96
USP48-207ENST00000471752 COX7CP15954 63 aa2.77□□□□□ -1.97
USP48-207ENST00000471752 KRTAP5-10Q6L8G5 202 aa2.76□□□□□ -1.97
USP48-207ENST00000471752 A0A0A0MQY5 61 aa2.75□□□□□ -1.97
USP48-207ENST00000471752 SMIM26A0A096LP01 95 aa2.71□□□□□ -1.98
USP48-207ENST00000471752 A0A1B0GU69 56 aa2.71□□□□□ -1.98
USP48-207ENST00000471752 TNP1P09430 55 aa2.69□□□□□ -1.98
USP48-207ENST00000471752 PCP4P48539 62 aa2.68□□□□□ -1.98
USP48-207ENST00000471752 SYNE1Q8NF91 8797 aaKnown RBP2.68□□□□□ -1.98
USP48-207ENST00000471752 KRTAP12-3P60328 96 aa2.67□□□□□ -1.98
USP48-207ENST00000471752 CCDC179H3BU77 68 aa2.66□□□□□ -1.98
USP48-207ENST00000471752 KRTAP5-5Q701N2 237 aaPredicted RBP2.66□□□□□ -1.98
USP48-207ENST00000471752 KRTAP20-2Q3LI61 65 aa2.65□□□□□ -1.99
USP48-207ENST00000471752 KRTAP5-7Q6L8G8 165 aa2.62□□□□□ -1.99
USP48-207ENST00000471752 SVIPQ8NHG7 77 aa2.62□□□□□ -1.99
USP48-207ENST00000471752 KRTAP9-6A8MVA2 160 aa2.61□□□□□ -1.99
USP48-207ENST00000471752 ANAPC13Q9BS18 74 aa2.6□□□□□ -1.99
USP48-207ENST00000471752 LINC01558Q9Y6Z2 57 aa2.58□□□□□ -2
USP48-207ENST00000471752 SPRR5A0A1B0GTR4 108 aa2.57□□□□□ -2
USP48-207ENST00000471752 LCE1FQ5T754 118 aa2.56□□□□□ -2
USP48-207ENST00000471752 KRTAP12-4P60329 112 aa2.53□□□□□ -2
USP48-207ENST00000471752 PRR15LQ9BU68 103 aa2.53□□□□□ -2
USP48-207ENST00000471752 KRTAP5-2Q701N4 177 aa2.52□□□□□ -2.01
USP48-207ENST00000471752 UQCR11O14957 56 aa2.49□□□□□ -2.01
USP48-207ENST00000471752 AHNAKQ09666 5890 aaKnown RBP2.48□□□□□ -2.01
USP48-207ENST00000471752 KRTAP25-1Q3LHN0 102 aa2.48□□□□□ -2.01
USP48-207ENST00000471752 KRTAP6-1Q3LI64 71 aa2.47□□□□□ -2.01
USP48-207ENST00000471752 LCE3CQ5T5A8 94 aa2.47□□□□□ -2.01
USP48-207ENST00000471752 ATP5EP56381 51 aaPredicted RBP2.46□□□□□ -2.02
USP48-207ENST00000471752 MIR22HGQ0VDD5 57 aa2.46□□□□□ -2.02
USP48-207ENST00000471752 OBSCNQ5VST9 7968 aa2.46□□□□□ -2.02
USP48-207ENST00000471752 MUC5BQ9HC84 5762 aaPredicted RBP2.46□□□□□ -2.02
USP48-207ENST00000471752 PSPHP1O15172 72 aa2.41□□□□□ -2.02
USP48-207ENST00000471752 MT1AP04731 61 aa2.41□□□□□ -2.02
USP48-207ENST00000471752 TMEM258P61165 79 aa2.4□□□□□ -2.03
USP48-207ENST00000471752 MUC5ACP98088 5654 aa2.39□□□□□ -2.03
USP48-207ENST00000471752 KRTAP5-8O75690 187 aa2.38□□□□□ -2.03
USP48-207ENST00000471752 KRTAP6-2Q3LI66 62 aa2.37□□□□□ -2.03
USP48-207ENST00000471752 K7ERS5 55 aa2.32□□□□□ -2.04
USP48-207ENST00000471752 Q1T7F1 81 aa2.32□□□□□ -2.04
USP48-207ENST00000471752 PRAC1Q96KF2 57 aa2.27□□□□□ -2.05
USP48-207ENST00000471752 A6NED7 52 aa2.25□□□□□ -2.05
USP48-207ENST00000471752 ROMO1P60602 79 aa2.25□□□□□ -2.05
USP48-207ENST00000471752 LCE3EQ5T5B0 92 aa2.24□□□□□ -2.05
USP48-207ENST00000471752 CDC42SE1Q9NRR8 79 aa2.24□□□□□ -2.05
USP48-207ENST00000471752 V9GYY9 64 aa2.24□□□□□ -2.05
USP48-207ENST00000471752 NDUFAF8A1L188 74 aa2.23□□□□□ -2.05
USP48-207ENST00000471752 RPS28P62857 69 aaKnown RBP2.21□□□□□ -2.06
USP48-207ENST00000471752 LCE1BQ5T7P3 118 aa1.98□□□□□ -2.09
USP48-207ENST00000471752 LCE1CQ5T751 118 aa1.97□□□□□ -2.09
USP48-207ENST00000471752 BRK1Q8WUW1 75 aa1.8□□□□□ -2.12
USP48-207ENST00000471752 LCE3DQ9BYE3 92 aa1.79□□□□□ -2.12
USP48-207ENST00000471752 PMAIP1Q13794 54 aa1.67□□□□□ -2.14
USP48-207ENST00000471752 KRTAP21-2Q3LI59 83 aa1.63□□□□□ -2.15
USP48-207ENST00000471752 PHGR1C9JFL3 82 aa1.59□□□□□ -2.15
USP48-207ENST00000471752 MUC19Q7Z5P9 8384 aa1.56□□□□□ -2.16
USP48-207ENST00000471752 PRO0628Q9UI54 55 aa1.39□□□□□ -2.19
USP48-207ENST00000471752 KTN1-AS1Q86SY8 53 aa1.36□□□□□ -2.19
USP48-207ENST00000471752 LUZP6Q538Z0 58 aa1.31□□□□□ -2.2
USP48-207ENST00000471752 PRM1P04553 51 aa1.18□□□□□ -2.22
USP48-207ENST00000471752 KRTAP21-1Q3LI58 79 aa1.16□□□□□ -2.22
USP48-207ENST00000471752 MUC16Q8WXI7 14507 aa0.97□□□□□ -2.25
USP48-207ENST00000471752 INE1O15225 51 aa0.66□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 105.6 ms