RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 PP632Q6XCG6 107 aa6.67□□□□□ -1.34
USP39-209ENST00000458268 MT1LQ93083 61 aa6.66□□□□□ -1.34
USP39-209ENST00000458268 MT1MQ8N339 61 aa6.61□□□□□ -1.35
USP39-209ENST00000458268 A6NED7 52 aa6.58□□□□□ -1.36
USP39-209ENST00000458268 DSTQ03001 7570 aaKnown RBP6.56□□□□□ -1.36
USP39-209ENST00000458268 KRTAP12-3P60328 96 aa6.54□□□□□ -1.36
USP39-209ENST00000458268 PCP4P48539 62 aa6.53□□□□□ -1.36
USP39-209ENST00000458268 KRTAP25-1Q3LHN0 102 aa6.53□□□□□ -1.36
USP39-209ENST00000458268 KRTAP4-3Q9BYR4 195 aa6.52□□□□□ -1.37
USP39-209ENST00000458268 KRTAP4-9Q9BYQ8 210 aa6.48□□□□□ -1.37
USP39-209ENST00000458268 KRTAP4-7Q9BYR0 210 aa6.4□□□□□ -1.38
USP39-209ENST00000458268 RPS28P62857 69 aaKnown RBP6.38□□□□□ -1.39
USP39-209ENST00000458268 CDC42SE1Q9NRR8 79 aa6.34□□□□□ -1.39
USP39-209ENST00000458268 MT4P47944 62 aa6.32□□□□□ -1.4
USP39-209ENST00000458268 LCE1DQ5T752 114 aa6.3□□□□□ -1.4
USP39-209ENST00000458268 LCE4AQ5TA78 99 aa6.29□□□□□ -1.4
USP39-209ENST00000458268 ROMO1P60602 79 aa6.23□□□□□ -1.41
USP39-209ENST00000458268 KRTAP23-1A1A580 65 aa6.18□□□□□ -1.42
USP39-209ENST00000458268 KRTAP15-1Q3LI76 137 aa6.14□□□□□ -1.43
USP39-209ENST00000458268 KRTAP5-4Q6L8H1 288 aa6.13□□□□□ -1.43
USP39-209ENST00000458268 KRTAP4-6Q9BYQ5 205 aa6.09□□□□□ -1.43
USP39-209ENST00000458268 HMCN1Q96RW7 5635 aa6.09□□□□□ -1.44
USP39-209ENST00000458268 LOC100996750A0A140TA64 210 aa6.06□□□□□ -1.44
USP39-209ENST00000458268 GPR98Q8WXG9 6306 aa6.03□□□□□ -1.44
USP39-209ENST00000458268 LCE3CQ5T5A8 94 aa6.02□□□□□ -1.45
USP39-209ENST00000458268 KRTAP19-4Q3LI73 84 aa6□□□□□ -1.45
USP39-209ENST00000458268 KRTAP5-5Q701N2 237 aaPredicted RBP5.97□□□□□ -1.45
USP39-209ENST00000458268 KRTAP12-4P60329 112 aa5.86□□□□□ -1.47
USP39-209ENST00000458268 AHNAK2Q8IVF2 5795 aa5.85□□□□□ -1.47
USP39-209ENST00000458268 KRTAP20-2Q3LI61 65 aa5.85□□□□□ -1.47
USP39-209ENST00000458268 BRK1Q8WUW1 75 aa5.8□□□□□ -1.48
USP39-209ENST00000458268 SPRR5A0A1B0GTR4 108 aa5.78□□□□□ -1.48
USP39-209ENST00000458268 SYNE1Q8NF91 8797 aaKnown RBP5.73□□□□□ -1.49
USP39-209ENST00000458268 KRTAP5-10Q6L8G5 202 aa5.72□□□□□ -1.49
USP39-209ENST00000458268 KRTAP9-6A8MVA2 160 aa5.66□□□□□ -1.5
USP39-209ENST00000458268 MT1AP04731 61 aa5.66□□□□□ -1.5
USP39-209ENST00000458268 KRTAP5-3Q6L8H2 238 aa5.66□□□□□ -1.5
USP39-209ENST00000458268 KRTAP6-1Q3LI64 71 aa5.64□□□□□ -1.51
USP39-209ENST00000458268 KRTAP5-7Q6L8G8 165 aa5.47□□□□□ -1.53
USP39-209ENST00000458268 KRTAP9-4Q9BYQ2 154 aa5.44□□□□□ -1.54
USP39-209ENST00000458268 PMAIP1Q13794 54 aa5.41□□□□□ -1.54
USP39-209ENST00000458268 KRTAP5-2Q701N4 177 aa5.39□□□□□ -1.55
USP39-209ENST00000458268 KRTAP6-2Q3LI66 62 aa5.38□□□□□ -1.55
USP39-209ENST00000458268 KRTAP4-11Q9BYQ6 195 aa5.3□□□□□ -1.56
USP39-209ENST00000458268 H3BS24 57 aa5.29□□□□□ -1.56
USP39-209ENST00000458268 PRAC1Q96KF2 57 aa5.25□□□□□ -1.57
USP39-209ENST00000458268 MT3P25713 68 aa5.18□□□□□ -1.58
USP39-209ENST00000458268 KRTAP5-8O75690 187 aa5.11□□□□□ -1.59
USP39-209ENST00000458268 SVIPQ8NHG7 77 aa5.05□□□□□ -1.6
USP39-209ENST00000458268 PRO0628Q9UI54 55 aa5.02□□□□□ -1.61
USP39-209ENST00000458268 OBSCNQ5VST9 7968 aa5□□□□□ -1.61
USP39-209ENST00000458268 KRTAP9-9Q9BYP9 154 aa4.87□□□□□ -1.63
USP39-209ENST00000458268 KRTAP5-1Q6L8H4 278 aa4.83□□□□□ -1.64
USP39-209ENST00000458268 KTN1-AS1Q86SY8 53 aa4.82□□□□□ -1.64
USP39-209ENST00000458268 MUC5BQ9HC84 5762 aaPredicted RBP4.76□□□□□ -1.65
USP39-209ENST00000458268 AHNAKQ09666 5890 aaKnown RBP4.75□□□□□ -1.65
USP39-209ENST00000458268 MUC5ACP98088 5654 aa4.74□□□□□ -1.65
USP39-209ENST00000458268 LCE1EQ5T753 118 aa4.63□□□□□ -1.67
USP39-209ENST00000458268 LCE1BQ5T7P3 118 aa4.54□□□□□ -1.68
USP39-209ENST00000458268 KRTAP4-2Q9BYR5 136 aa4.42□□□□□ -1.7
USP39-209ENST00000458268 LUZP6Q538Z0 58 aa4.39□□□□□ -1.71
USP39-209ENST00000458268 LCE3DQ9BYE3 92 aa4.38□□□□□ -1.71
USP39-209ENST00000458268 LCE1CQ5T751 118 aa4.31□□□□□ -1.72
USP39-209ENST00000458268 LCE3EQ5T5B0 92 aa4.14□□□□□ -1.75
USP39-209ENST00000458268 A0A0A0MQY5 61 aa4.13□□□□□ -1.75
USP39-209ENST00000458268 KRTAP4-12Q9BQ66 201 aa4.08□□□□□ -1.76
USP39-209ENST00000458268 KRTAP5-11Q6L8G4 156 aa3.91□□□□□ -1.78
USP39-209ENST00000458268 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.9□□□□□ -1.79
USP39-209ENST00000458268 LCE1FQ5T754 118 aa3.74□□□□□ -1.81
USP39-209ENST00000458268 KRTAP21-2Q3LI59 83 aa3.67□□□□□ -1.82
USP39-209ENST00000458268 NDUFAF8A1L188 74 aa3.63□□□□□ -1.83
USP39-209ENST00000458268 KRTAP4-4Q9BYR3 166 aa3.47□□□□□ -1.85
USP39-209ENST00000458268 PHGR1C9JFL3 82 aa3.4□□□□□ -1.87
USP39-209ENST00000458268 PRM1P04553 51 aa3.23□□□□□ -1.89
USP39-209ENST00000458268 MUC19Q7Z5P9 8384 aa3.1□□□□□ -1.91
USP39-209ENST00000458268 INE1O15225 51 aa2.83□□□□□ -1.96
USP39-209ENST00000458268 KRTAP21-1Q3LI58 79 aa2.53□□□□□ -2
USP39-209ENST00000458268 MUC16Q8WXI7 14507 aa2.17□□□□□ -2.06
Retrieved 78 of 20,778 RNA–protein pairs in 106 ms