RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	COX7C	P15954	63 aa		3.3	□□□□□ -1.88
RFX3-209	ENST00000451859	SPINT4	Q6UDR6	99 aa		3.3	□□□□□ -1.88
RFX3-209	ENST00000451859	CYSTM1	Q9H1C7	97 aa		3.28	□□□□□ -1.88
RFX3-209	ENST00000451859		A0A1B0GU33	70 aa		3.26	□□□□□ -1.89
RFX3-209	ENST00000451859		H7BZZ5	65 aa		3.25	□□□□□ -1.89
RFX3-209	ENST00000451859	KRTAP19-7	Q3SYF9	63 aa		3.25	□□□□□ -1.89
RFX3-209	ENST00000451859	MT1E	P04732	61 aa		3.23	□□□□□ -1.89
RFX3-209	ENST00000451859	KRTAP12-1	P59990	96 aa		3.23	□□□□□ -1.89
RFX3-209	ENST00000451859	PCP4	P48539	62 aa		3.22	□□□□□ -1.89
RFX3-209	ENST00000451859		A0A1B0GU69	56 aa		3.21	□□□□□ -1.9
RFX3-209	ENST00000451859	KRTAP19-3	Q7Z4W3	81 aa		3.2	□□□□□ -1.9
RFX3-209	ENST00000451859		A8MU10	97 aa		3.19	□□□□□ -1.9
RFX3-209	ENST00000451859	KRTAP19-5	Q3LI72	72 aa		3.19	□□□□□ -1.9
RFX3-209	ENST00000451859	DST	Q03001	7570 aa	Known RBP	3.19	□□□□□ -1.9
RFX3-209	ENST00000451859	ANAPC13	Q9BS18	74 aa		3.18	□□□□□ -1.9
RFX3-209	ENST00000451859	SMIM26	A0A096LP01	95 aa		3.17	□□□□□ -1.9
RFX3-209	ENST00000451859	LCE3C	Q5T5A8	94 aa		3.15	□□□□□ -1.91
RFX3-209	ENST00000451859	CCDC179	H3BU77	68 aa		3.12	□□□□□ -1.91
RFX3-209	ENST00000451859	MT1G	P13640	62 aa		3.11	□□□□□ -1.91
RFX3-209	ENST00000451859	LCE3A	Q5TA76	89 aa		3.1	□□□□□ -1.91
RFX3-209	ENST00000451859	PP632	Q6XCG6	107 aa		3.1	□□□□□ -1.91
RFX3-209	ENST00000451859	GPR98	Q8WXG9	6306 aa		3.1	□□□□□ -1.91
RFX3-209	ENST00000451859	TNP1	P09430	55 aa		3.09	□□□□□ -1.91
RFX3-209	ENST00000451859	MT1M	Q8N339	61 aa		3.09	□□□□□ -1.91
RFX3-209	ENST00000451859	C10orf95	Q9H7T3	257 aa		3.09	□□□□□ -1.91
RFX3-209	ENST00000451859	MT1L	Q93083	61 aa		3.08	□□□□□ -1.92
RFX3-209	ENST00000451859	PRR15L	Q9BU68	103 aa		3.08	□□□□□ -1.92
RFX3-209	ENST00000451859		A0A0A0MQY5	61 aa		3.06	□□□□□ -1.92
RFX3-209	ENST00000451859	ATP5E	P56381	51 aa	Predicted RBP	3.06	□□□□□ -1.92
RFX3-209	ENST00000451859	MT4	P47944	62 aa		3.04	□□□□□ -1.92
RFX3-209	ENST00000451859	LINC01558	Q9Y6Z2	57 aa		3.02	□□□□□ -1.93
RFX3-209	ENST00000451859	HMCN1	Q96RW7	5635 aa		3.01	□□□□□ -1.93
RFX3-209	ENST00000451859	UQCR11	O14957	56 aa		2.97	□□□□□ -1.93
RFX3-209	ENST00000451859	TMEM258	P61165	79 aa		2.97	□□□□□ -1.93
RFX3-209	ENST00000451859	KRTAP12-3	P60328	96 aa		2.96	□□□□□ -1.94
RFX3-209	ENST00000451859	AHNAK2	Q8IVF2	5795 aa		2.95	□□□□□ -1.94
RFX3-209	ENST00000451859	MIR22HG	Q0VDD5	57 aa		2.92	□□□□□ -1.94
RFX3-209	ENST00000451859	KRTAP5-5	Q701N2	237 aa	Predicted RBP	2.92	□□□□□ -1.94
RFX3-209	ENST00000451859	KRTAP25-1	Q3LHN0	102 aa		2.88	□□□□□ -1.95
RFX3-209	ENST00000451859		K7ERS5	55 aa		2.87	□□□□□ -1.95
RFX3-209	ENST00000451859	PSPHP1	O15172	72 aa		2.87	□□□□□ -1.95
RFX3-209	ENST00000451859	LCE3E	Q5T5B0	92 aa		2.87	□□□□□ -1.95
RFX3-209	ENST00000451859	KRTAP5-8	O75690	187 aa		2.84	□□□□□ -1.95
RFX3-209	ENST00000451859	KRTAP5-10	Q6L8G5	202 aa		2.82	□□□□□ -1.96
RFX3-209	ENST00000451859		V9GYY9	64 aa		2.81	□□□□□ -1.96
RFX3-209	ENST00000451859	KRTAP20-2	Q3LI61	65 aa		2.79	□□□□□ -1.96
RFX3-209	ENST00000451859		Q1T7F1	81 aa		2.78	□□□□□ -1.96
RFX3-209	ENST00000451859	SYNE1	Q8NF91	8797 aa	Known RBP	2.77	□□□□□ -1.97
RFX3-209	ENST00000451859		A6NED7	52 aa		2.76	□□□□□ -1.97
RFX3-209	ENST00000451859	KRTAP12-4	P60329	112 aa		2.75	□□□□□ -1.97
RFX3-209	ENST00000451859	LCE1C	Q5T751	118 aa		2.75	□□□□□ -1.97
RFX3-209	ENST00000451859	LCE1B	Q5T7P3	118 aa		2.75	□□□□□ -1.97
RFX3-209	ENST00000451859	SPRR5	A0A1B0GTR4	108 aa		2.74	□□□□□ -1.97
RFX3-209	ENST00000451859	CDC42SE1	Q9NRR8	79 aa		2.72	□□□□□ -1.97
RFX3-209	ENST00000451859	KRTAP5-7	Q6L8G8	165 aa		2.7	□□□□□ -1.98
RFX3-209	ENST00000451859	ROMO1	P60602	79 aa		2.66	□□□□□ -1.98
RFX3-209	ENST00000451859	RPS28	P62857	69 aa	Known RBP	2.64	□□□□□ -1.99
RFX3-209	ENST00000451859	MT1A	P04731	61 aa		2.62	□□□□□ -1.99
RFX3-209	ENST00000451859	KRTAP6-1	Q3LI64	71 aa		2.62	□□□□□ -1.99
RFX3-209	ENST00000451859	KRTAP6-2	Q3LI66	62 aa		2.52	□□□□□ -2.01
RFX3-209	ENST00000451859	PRAC1	Q96KF2	57 aa		2.51	□□□□□ -2.01
RFX3-209	ENST00000451859	PRO0628	Q9UI54	55 aa		2.51	□□□□□ -2.01
RFX3-209	ENST00000451859	PMAIP1	Q13794	54 aa		2.44	□□□□□ -2.02
RFX3-209	ENST00000451859	AHNAK	Q09666	5890 aa	Known RBP	2.41	□□□□□ -2.02
RFX3-209	ENST00000451859	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.4	□□□□□ -2.03
RFX3-209	ENST00000451859	MUC5AC	P98088	5654 aa		2.37	□□□□□ -2.03
RFX3-209	ENST00000451859	BRK1	Q8WUW1	75 aa		2.33	□□□□□ -2.04
RFX3-209	ENST00000451859	MUC19	Q7Z5P9	8384 aa		2.3	□□□□□ -2.04
RFX3-209	ENST00000451859	KTN1-AS1	Q86SY8	53 aa		2.21	□□□□□ -2.06
RFX3-209	ENST00000451859	LUZP6	Q538Z0	58 aa		2.2	□□□□□ -2.06
RFX3-209	ENST00000451859	NDUFAF8	A1L188	74 aa		2.17	□□□□□ -2.06
RFX3-209	ENST00000451859	LCE3D	Q9BYE3	92 aa		2.13	□□□□□ -2.07
RFX3-209	ENST00000451859	KRTAP21-2	Q3LI59	83 aa		2.03	□□□□□ -2.08
RFX3-209	ENST00000451859	PHGR1	C9JFL3	82 aa		1.67	□□□□□ -2.14
RFX3-209	ENST00000451859	INE1	O15225	51 aa		1.62	□□□□□ -2.15
RFX3-209	ENST00000451859	PRM1	P04553	51 aa		1.38	□□□□□ -2.19
RFX3-209	ENST00000451859	KRTAP21-1	Q3LI58	79 aa		1.24	□□□□□ -2.21
RFX3-209	ENST00000451859	MUC16	Q8WXI7	14507 aa		1.04	□□□□□ -2.24

Retrieved 78 of 20,778 RNA–protein pairs in 250 ms