RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 KRTAP19-3Q7Z4W3 81 aa4.68□□□□□ -1.66
PRPF40A-203ENST00000448428 C10orf95Q9H7T3 257 aa4.68□□□□□ -1.66
PRPF40A-203ENST00000448428 TNP1P09430 55 aa4.63□□□□□ -1.67
PRPF40A-203ENST00000448428 UQCR11O14957 56 aa4.6□□□□□ -1.67
PRPF40A-203ENST00000448428 LCE3AQ5TA76 89 aa4.6□□□□□ -1.67
PRPF40A-203ENST00000448428 MT1GP13640 62 aa4.59□□□□□ -1.67
PRPF40A-203ENST00000448428 MT1LQ93083 61 aa4.54□□□□□ -1.68
PRPF40A-203ENST00000448428 PP632Q6XCG6 107 aa4.53□□□□□ -1.68
PRPF40A-203ENST00000448428 MIR22HGQ0VDD5 57 aa4.51□□□□□ -1.69
PRPF40A-203ENST00000448428 MT1MQ8N339 61 aa4.51□□□□□ -1.69
PRPF40A-203ENST00000448428 PSPHP1O15172 72 aa4.46□□□□□ -1.7
PRPF40A-203ENST00000448428 V9GYY9 64 aa4.46□□□□□ -1.7
PRPF40A-203ENST00000448428 Q1T7F1 81 aa4.45□□□□□ -1.7
PRPF40A-203ENST00000448428 DSTQ03001 7570 aaKnown RBP4.44□□□□□ -1.7
PRPF40A-203ENST00000448428 KRTAP12-3P60328 96 aa4.42□□□□□ -1.7
PRPF40A-203ENST00000448428 KRTAP4-3Q9BYR4 195 aa4.42□□□□□ -1.7
PRPF40A-203ENST00000448428 K7ERS5 55 aa4.39□□□□□ -1.71
PRPF40A-203ENST00000448428 KRTAP25-1Q3LHN0 102 aa4.38□□□□□ -1.71
PRPF40A-203ENST00000448428 LCE4AQ5TA78 99 aa4.38□□□□□ -1.71
PRPF40A-203ENST00000448428 A6NED7 52 aa4.29□□□□□ -1.72
PRPF40A-203ENST00000448428 MT4P47944 62 aa4.28□□□□□ -1.72
PRPF40A-203ENST00000448428 KRTAP5-4Q6L8H1 288 aa4.27□□□□□ -1.73
PRPF40A-203ENST00000448428 RPS28P62857 69 aaKnown RBP4.26□□□□□ -1.73
PRPF40A-203ENST00000448428 KRTAP23-1A1A580 65 aa4.23□□□□□ -1.73
PRPF40A-203ENST00000448428 PCP4P48539 62 aa4.22□□□□□ -1.73
PRPF40A-203ENST00000448428 CDC42SE1Q9NRR8 79 aa4.17□□□□□ -1.74
PRPF40A-203ENST00000448428 KRTAP19-4Q3LI73 84 aa4.16□□□□□ -1.74
PRPF40A-203ENST00000448428 KRTAP15-1Q3LI76 137 aa4.15□□□□□ -1.75
PRPF40A-203ENST00000448428 ROMO1P60602 79 aa4.13□□□□□ -1.75
PRPF40A-203ENST00000448428 KRTAP5-5Q701N2 237 aaPredicted RBP4.13□□□□□ -1.75
PRPF40A-203ENST00000448428 HMCN1Q96RW7 5635 aa4.1□□□□□ -1.75
PRPF40A-203ENST00000448428 LCE3CQ5T5A8 94 aa4.08□□□□□ -1.76
PRPF40A-203ENST00000448428 GPR98Q8WXG9 6306 aa4.03□□□□□ -1.76
PRPF40A-203ENST00000448428 KRTAP20-2Q3LI61 65 aa4.02□□□□□ -1.77
PRPF40A-203ENST00000448428 SPRR5A0A1B0GTR4 108 aa4.01□□□□□ -1.77
PRPF40A-203ENST00000448428 KRTAP12-4P60329 112 aa4□□□□□ -1.77
PRPF40A-203ENST00000448428 KRTAP5-10Q6L8G5 202 aa3.98□□□□□ -1.77
PRPF40A-203ENST00000448428 AHNAK2Q8IVF2 5795 aa3.94□□□□□ -1.78
PRPF40A-203ENST00000448428 KRTAP9-6A8MVA2 160 aa3.87□□□□□ -1.79
PRPF40A-203ENST00000448428 SYNE1Q8NF91 8797 aaKnown RBP3.86□□□□□ -1.79
PRPF40A-203ENST00000448428 MT1AP04731 61 aa3.86□□□□□ -1.79
PRPF40A-203ENST00000448428 KRTAP6-1Q3LI64 71 aa3.84□□□□□ -1.79
PRPF40A-203ENST00000448428 KRTAP5-7Q6L8G8 165 aa3.82□□□□□ -1.8
PRPF40A-203ENST00000448428 KRTAP5-2Q701N4 177 aa3.75□□□□□ -1.81
PRPF40A-203ENST00000448428 BRK1Q8WUW1 75 aa3.72□□□□□ -1.81
PRPF40A-203ENST00000448428 KRTAP6-2Q3LI66 62 aa3.66□□□□□ -1.82
PRPF40A-203ENST00000448428 KRTAP5-8O75690 187 aa3.55□□□□□ -1.84
PRPF40A-203ENST00000448428 MT3P25713 68 aa3.53□□□□□ -1.84
PRPF40A-203ENST00000448428 PMAIP1Q13794 54 aa3.51□□□□□ -1.85
PRPF40A-203ENST00000448428 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.51□□□□□ -1.85
PRPF40A-203ENST00000448428 PRAC1Q96KF2 57 aa3.39□□□□□ -1.87
PRPF40A-203ENST00000448428 KRTAP5-1Q6L8H4 278 aa3.35□□□□□ -1.87
PRPF40A-203ENST00000448428 SVIPQ8NHG7 77 aa3.33□□□□□ -1.88
PRPF40A-203ENST00000448428 PRO0628Q9UI54 55 aa3.33□□□□□ -1.88
PRPF40A-203ENST00000448428 OBSCNQ5VST9 7968 aa3.33□□□□□ -1.88
PRPF40A-203ENST00000448428 LCE1EQ5T753 118 aa3.23□□□□□ -1.89
PRPF40A-203ENST00000448428 MUC5ACP98088 5654 aa3.22□□□□□ -1.89
PRPF40A-203ENST00000448428 KRTAP5-11Q6L8G4 156 aa3.2□□□□□ -1.9
PRPF40A-203ENST00000448428 MUC5BQ9HC84 5762 aaPredicted RBP3.18□□□□□ -1.9
PRPF40A-203ENST00000448428 AHNAKQ09666 5890 aaKnown RBP3.15□□□□□ -1.9
PRPF40A-203ENST00000448428 KTN1-AS1Q86SY8 53 aa3.1□□□□□ -1.91
PRPF40A-203ENST00000448428 LCE1BQ5T7P3 118 aa3.04□□□□□ -1.92
PRPF40A-203ENST00000448428 H3BS24 57 aa3.02□□□□□ -1.93
PRPF40A-203ENST00000448428 LCE1CQ5T751 118 aa2.99□□□□□ -1.93
PRPF40A-203ENST00000448428 LCE3DQ9BYE3 92 aa2.95□□□□□ -1.94
PRPF40A-203ENST00000448428 KRTAP4-4Q9BYR3 166 aa2.94□□□□□ -1.94
PRPF40A-203ENST00000448428 LUZP6Q538Z0 58 aa2.82□□□□□ -1.96
PRPF40A-203ENST00000448428 LCE3EQ5T5B0 92 aa2.78□□□□□ -1.96
PRPF40A-203ENST00000448428 LCE1FQ5T754 118 aa2.62□□□□□ -1.99
PRPF40A-203ENST00000448428 KRTAP21-2Q3LI59 83 aa2.54□□□□□ -2
PRPF40A-203ENST00000448428 NDUFAF8A1L188 74 aa2.39□□□□□ -2.03
PRPF40A-203ENST00000448428 PHGR1C9JFL3 82 aa2.34□□□□□ -2.03
PRPF40A-203ENST00000448428 A0A0A0MQY5 61 aa2.13□□□□□ -2.07
PRPF40A-203ENST00000448428 PRM1P04553 51 aa2.11□□□□□ -2.07
PRPF40A-203ENST00000448428 MUC19Q7Z5P9 8384 aa2.07□□□□□ -2.08
PRPF40A-203ENST00000448428 INE1O15225 51 aa2□□□□□ -2.09
PRPF40A-203ENST00000448428 KRTAP21-1Q3LI58 79 aa1.75□□□□□ -2.13
PRPF40A-203ENST00000448428 MUC16Q8WXI7 14507 aa1.52□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 77.7 ms