RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 LCE3BQ5TA77 95 aa6.5□□□□□ -1.37
LIME1-202ENST00000444951 KRTAP19-5Q3LI72 72 aa6.42□□□□□ -1.38
LIME1-202ENST00000444951 KRTAP19-7Q3SYF9 63 aa6.39□□□□□ -1.39
LIME1-202ENST00000444951 PMAIP1Q13794 54 aa6.36□□□□□ -1.39
LIME1-202ENST00000444951 GPR98Q8WXG9 6306 aa6.35□□□□□ -1.39
LIME1-202ENST00000444951 MT1EP04732 61 aa6.32□□□□□ -1.4
LIME1-202ENST00000444951 PRO0628Q9UI54 55 aa6.31□□□□□ -1.4
LIME1-202ENST00000444951 DSTQ03001 7570 aaKnown RBP6.3□□□□□ -1.4
LIME1-202ENST00000444951 KRTAP23-1A1A580 65 aa6.28□□□□□ -1.4
LIME1-202ENST00000444951 KRTAP12-3P60328 96 aa6.26□□□□□ -1.41
LIME1-202ENST00000444951 PP632Q6XCG6 107 aa6.21□□□□□ -1.42
LIME1-202ENST00000444951 LCE5AQ5TCM9 118 aa6.19□□□□□ -1.42
LIME1-202ENST00000444951 KRTAP19-3Q7Z4W3 81 aa6.16□□□□□ -1.42
LIME1-202ENST00000444951 KRTAP4-9Q9BYQ8 210 aa6.16□□□□□ -1.42
LIME1-202ENST00000444951 MT1LQ93083 61 aa6.14□□□□□ -1.43
LIME1-202ENST00000444951 MT1GP13640 62 aa6.06□□□□□ -1.44
LIME1-202ENST00000444951 PRAC1Q96KF2 57 aa6.04□□□□□ -1.44
LIME1-202ENST00000444951 KRTAP15-1Q3LI76 137 aa6.02□□□□□ -1.45
LIME1-202ENST00000444951 HMCN1Q96RW7 5635 aa5.99□□□□□ -1.45
LIME1-202ENST00000444951 MT1MQ8N339 61 aa5.99□□□□□ -1.45
LIME1-202ENST00000444951 LCE1DQ5T752 114 aa5.97□□□□□ -1.45
LIME1-202ENST00000444951 AHNAK2Q8IVF2 5795 aa5.95□□□□□ -1.46
LIME1-202ENST00000444951 KTN1-AS1Q86SY8 53 aa5.92□□□□□ -1.46
LIME1-202ENST00000444951 KRTAP4-7Q9BYR0 210 aa5.92□□□□□ -1.46
LIME1-202ENST00000444951 KRTAP4-3Q9BYR4 195 aa5.9□□□□□ -1.46
LIME1-202ENST00000444951 MT4P47944 62 aa5.87□□□□□ -1.47
LIME1-202ENST00000444951 LCE4AQ5TA78 99 aa5.84□□□□□ -1.47
LIME1-202ENST00000444951 KRTAP19-4Q3LI73 84 aa5.81□□□□□ -1.48
LIME1-202ENST00000444951 LCE3CQ5T5A8 94 aa5.81□□□□□ -1.48
LIME1-202ENST00000444951 KRTAP5-4Q6L8H1 288 aa5.73□□□□□ -1.49
LIME1-202ENST00000444951 KRTAP4-6Q9BYQ5 205 aa5.7□□□□□ -1.5
LIME1-202ENST00000444951 SVIPQ8NHG7 77 aa5.69□□□□□ -1.5
LIME1-202ENST00000444951 KRTAP5-10Q6L8G5 202 aa5.67□□□□□ -1.5
LIME1-202ENST00000444951 LOC100996750A0A140TA64 210 aa5.59□□□□□ -1.51
LIME1-202ENST00000444951 KRTAP9-6A8MVA2 160 aa5.48□□□□□ -1.53
LIME1-202ENST00000444951 KRTAP5-3Q6L8H2 238 aa5.47□□□□□ -1.53
LIME1-202ENST00000444951 KRTAP5-7Q6L8G8 165 aa5.46□□□□□ -1.54
LIME1-202ENST00000444951 KRTAP20-2Q3LI61 65 aa5.43□□□□□ -1.54
LIME1-202ENST00000444951 KRTAP5-5Q701N2 237 aaPredicted RBP5.42□□□□□ -1.54
LIME1-202ENST00000444951 SYNE1Q8NF91 8797 aaKnown RBP5.39□□□□□ -1.55
LIME1-202ENST00000444951 SPRR5A0A1B0GTR4 108 aa5.33□□□□□ -1.56
LIME1-202ENST00000444951 KRTAP12-4P60329 112 aa5.25□□□□□ -1.57
LIME1-202ENST00000444951 MT1AP04731 61 aa5.21□□□□□ -1.58
LIME1-202ENST00000444951 KRTAP6-1Q3LI64 71 aa5.18□□□□□ -1.58
LIME1-202ENST00000444951 KRTAP4-11Q9BYQ6 195 aa5.01□□□□□ -1.61
LIME1-202ENST00000444951 KRTAP5-2Q701N4 177 aa4.99□□□□□ -1.61
LIME1-202ENST00000444951 KRTAP9-4Q9BYQ2 154 aa4.99□□□□□ -1.61
LIME1-202ENST00000444951 LUZP6Q538Z0 58 aa4.97□□□□□ -1.61
LIME1-202ENST00000444951 AHNAKQ09666 5890 aaKnown RBP4.96□□□□□ -1.62
LIME1-202ENST00000444951 MUC5BQ9HC84 5762 aaPredicted RBP4.9□□□□□ -1.62
LIME1-202ENST00000444951 KRTAP6-2Q3LI66 62 aa4.87□□□□□ -1.63
LIME1-202ENST00000444951 KRTAP5-8O75690 187 aa4.86□□□□□ -1.63
LIME1-202ENST00000444951 MUC5ACP98088 5654 aa4.86□□□□□ -1.63
LIME1-202ENST00000444951 OBSCNQ5VST9 7968 aa4.8□□□□□ -1.64
LIME1-202ENST00000444951 MT3P25713 68 aa4.75□□□□□ -1.65
LIME1-202ENST00000444951 KRTAP9-9Q9BYP9 154 aa4.6□□□□□ -1.67
LIME1-202ENST00000444951 NDUFAF8A1L188 74 aa4.55□□□□□ -1.68
LIME1-202ENST00000444951 KRTAP5-1Q6L8H4 278 aa4.52□□□□□ -1.69
LIME1-202ENST00000444951 LCE3DQ9BYE3 92 aa4.3□□□□□ -1.72
LIME1-202ENST00000444951 LCE1EQ5T753 118 aa4.18□□□□□ -1.74
LIME1-202ENST00000444951 LCE3EQ5T5B0 92 aa4.13□□□□□ -1.75
LIME1-202ENST00000444951 KRTAP4-2Q9BYR5 136 aa4.05□□□□□ -1.76
LIME1-202ENST00000444951 LCE1BQ5T7P3 118 aa4.03□□□□□ -1.76
LIME1-202ENST00000444951 LCE1CQ5T751 118 aa3.89□□□□□ -1.79
LIME1-202ENST00000444951 A0A0A0MQY5 61 aa3.85□□□□□ -1.79
LIME1-202ENST00000444951 KRTAP4-12Q9BQ66 201 aa3.78□□□□□ -1.8
LIME1-202ENST00000444951 INE1O15225 51 aa3.68□□□□□ -1.82
LIME1-202ENST00000444951 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.58□□□□□ -1.84
LIME1-202ENST00000444951 KRTAP5-11Q6L8G4 156 aa3.56□□□□□ -1.84
LIME1-202ENST00000444951 LCE1FQ5T754 118 aa3.47□□□□□ -1.85
LIME1-202ENST00000444951 PRM1P04553 51 aa3.43□□□□□ -1.86
LIME1-202ENST00000444951 KRTAP21-2Q3LI59 83 aa3.38□□□□□ -1.87
LIME1-202ENST00000444951 PHGR1C9JFL3 82 aa3.29□□□□□ -1.88
LIME1-202ENST00000444951 H3BS24 57 aa3.25□□□□□ -1.89
LIME1-202ENST00000444951 KRTAP4-4Q9BYR3 166 aa3.11□□□□□ -1.91
LIME1-202ENST00000444951 MUC19Q7Z5P9 8384 aa2.99□□□□□ -1.93
LIME1-202ENST00000444951 KRTAP21-1Q3LI58 79 aa2.47□□□□□ -2.01
LIME1-202ENST00000444951 MUC16Q8WXI7 14507 aa2.14□□□□□ -2.07
Retrieved 78 of 20,778 RNA–protein pairs in 12.3 ms