RNA–Protein interactions for RNA: ENST00000444440.1

SF3A1-203, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 777 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-203ENST00000444440 Q1T7F1 81 aa3.94□□□□□ -1.78
SF3A1-203ENST00000444440 K7ERS5 55 aa3.92□□□□□ -1.78
SF3A1-203ENST00000444440 KRTAP4-9Q9BYQ8 210 aa3.92□□□□□ -1.78
SF3A1-203ENST00000444440 PSPHP1O15172 72 aa3.91□□□□□ -1.78
SF3A1-203ENST00000444440 PMAIP1Q13794 54 aa3.9□□□□□ -1.79
SF3A1-203ENST00000444440 MT1GP13640 62 aa3.89□□□□□ -1.79
SF3A1-203ENST00000444440 LCE3AQ5TA76 89 aa3.88□□□□□ -1.79
SF3A1-203ENST00000444440 MT1LQ93083 61 aa3.88□□□□□ -1.79
SF3A1-203ENST00000444440 MT1MQ8N339 61 aa3.87□□□□□ -1.79
SF3A1-203ENST00000444440 PP632Q6XCG6 107 aa3.84□□□□□ -1.79
SF3A1-203ENST00000444440 KRTAP4-3Q9BYR4 195 aa3.84□□□□□ -1.79
SF3A1-203ENST00000444440 BRK1Q8WUW1 75 aa3.83□□□□□ -1.8
SF3A1-203ENST00000444440 GPR98Q8WXG9 6306 aa3.81□□□□□ -1.8
SF3A1-203ENST00000444440 A6NED7 52 aa3.81□□□□□ -1.8
SF3A1-203ENST00000444440 LCE1DQ5T752 114 aa3.81□□□□□ -1.8
SF3A1-203ENST00000444440 KRTAP25-1Q3LHN0 102 aa3.8□□□□□ -1.8
SF3A1-203ENST00000444440 HMCN1Q96RW7 5635 aa3.77□□□□□ -1.81
SF3A1-203ENST00000444440 MT4P47944 62 aa3.75□□□□□ -1.81
SF3A1-203ENST00000444440 KRTAP12-3P60328 96 aa3.75□□□□□ -1.81
SF3A1-203ENST00000444440 LCE4AQ5TA78 99 aa3.74□□□□□ -1.81
SF3A1-203ENST00000444440 KRTAP4-7Q9BYR0 210 aa3.74□□□□□ -1.81
SF3A1-203ENST00000444440 KRTAP5-4Q6L8H1 288 aa3.72□□□□□ -1.81
SF3A1-203ENST00000444440 KTN1-AS1Q86SY8 53 aa3.72□□□□□ -1.81
SF3A1-203ENST00000444440 H3BS24 57 aa3.71□□□□□ -1.82
SF3A1-203ENST00000444440 AHNAK2Q8IVF2 5795 aa3.7□□□□□ -1.82
SF3A1-203ENST00000444440 KRTAP23-1A1A580 65 aa3.68□□□□□ -1.82
SF3A1-203ENST00000444440 CDC42SE1Q9NRR8 79 aa3.68□□□□□ -1.82
SF3A1-203ENST00000444440 KRTAP4-6Q9BYQ5 205 aa3.67□□□□□ -1.82
SF3A1-203ENST00000444440 ROMO1P60602 79 aa3.62□□□□□ -1.83
SF3A1-203ENST00000444440 KRTAP19-4Q3LI73 84 aa3.62□□□□□ -1.83
SF3A1-203ENST00000444440 KRTAP5-5Q701N2 237 aaPredicted RBP3.58□□□□□ -1.84
SF3A1-203ENST00000444440 KRTAP5-10Q6L8G5 202 aa3.56□□□□□ -1.84
SF3A1-203ENST00000444440 KRTAP15-1Q3LI76 137 aa3.55□□□□□ -1.84
SF3A1-203ENST00000444440 LOC100996750A0A140TA64 210 aa3.54□□□□□ -1.84
SF3A1-203ENST00000444440 KRTAP20-2Q3LI61 65 aa3.51□□□□□ -1.85
SF3A1-203ENST00000444440 LCE3CQ5T5A8 94 aa3.47□□□□□ -1.85
SF3A1-203ENST00000444440 SYNE1Q8NF91 8797 aaKnown RBP3.47□□□□□ -1.85
SF3A1-203ENST00000444440 KRTAP5-3Q6L8H2 238 aa3.46□□□□□ -1.86
SF3A1-203ENST00000444440 SPRR5A0A1B0GTR4 108 aa3.44□□□□□ -1.86
SF3A1-203ENST00000444440 A0A0A0MQY5 61 aa3.4□□□□□ -1.87
SF3A1-203ENST00000444440 KRTAP12-4P60329 112 aa3.4□□□□□ -1.87
SF3A1-203ENST00000444440 KRTAP5-7Q6L8G8 165 aa3.4□□□□□ -1.87
SF3A1-203ENST00000444440 PRAC1Q96KF2 57 aa3.32□□□□□ -1.88
SF3A1-203ENST00000444440 KRTAP6-1Q3LI64 71 aa3.31□□□□□ -1.88
SF3A1-203ENST00000444440 KRTAP9-6A8MVA2 160 aa3.29□□□□□ -1.88
SF3A1-203ENST00000444440 MT1AP04731 61 aa3.28□□□□□ -1.88
SF3A1-203ENST00000444440 KRTAP5-2Q701N4 177 aa3.26□□□□□ -1.89
SF3A1-203ENST00000444440 KRTAP4-11Q9BYQ6 195 aa3.19□□□□□ -1.9
SF3A1-203ENST00000444440 KRTAP9-4Q9BYQ2 154 aa3.18□□□□□ -1.9
SF3A1-203ENST00000444440 KRTAP6-2Q3LI66 62 aa3.14□□□□□ -1.91
SF3A1-203ENST00000444440 KRTAP5-8O75690 187 aa3.12□□□□□ -1.91
SF3A1-203ENST00000444440 OBSCNQ5VST9 7968 aa3.1□□□□□ -1.91
SF3A1-203ENST00000444440 LUZP6Q538Z0 58 aa3.02□□□□□ -1.93
SF3A1-203ENST00000444440 MUC5ACP98088 5654 aa3□□□□□ -1.93
SF3A1-203ENST00000444440 NDUFAF8A1L188 74 aa2.99□□□□□ -1.93
SF3A1-203ENST00000444440 AHNAKQ09666 5890 aaKnown RBP2.99□□□□□ -1.93
SF3A1-203ENST00000444440 MUC5BQ9HC84 5762 aaPredicted RBP2.98□□□□□ -1.93
SF3A1-203ENST00000444440 MT3P25713 68 aa2.98□□□□□ -1.93
SF3A1-203ENST00000444440 KRTAP5-1Q6L8H4 278 aa2.94□□□□□ -1.94
SF3A1-203ENST00000444440 KRTAP9-9Q9BYP9 154 aa2.9□□□□□ -1.95
SF3A1-203ENST00000444440 LCE1EQ5T753 118 aa2.74□□□□□ -1.97
SF3A1-203ENST00000444440 KRTAP4-2Q9BYR5 136 aa2.66□□□□□ -1.98
SF3A1-203ENST00000444440 LCE1BQ5T7P3 118 aa2.61□□□□□ -1.99
SF3A1-203ENST00000444440 INE1O15225 51 aa2.56□□□□□ -2
SF3A1-203ENST00000444440 LCE1CQ5T751 118 aa2.55□□□□□ -2
SF3A1-203ENST00000444440 LCE3DQ9BYE3 92 aa2.54□□□□□ -2
SF3A1-203ENST00000444440 KRTAP4-12Q9BQ66 201 aa2.51□□□□□ -2.01
SF3A1-203ENST00000444440 LCE3EQ5T5B0 92 aa2.4□□□□□ -2.03
SF3A1-203ENST00000444440 KRTAP5-11Q6L8G4 156 aa2.33□□□□□ -2.04
SF3A1-203ENST00000444440 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.33□□□□□ -2.04
SF3A1-203ENST00000444440 LCE1FQ5T754 118 aa2.23□□□□□ -2.05
SF3A1-203ENST00000444440 KRTAP21-2Q3LI59 83 aa2.18□□□□□ -2.06
SF3A1-203ENST00000444440 PHGR1C9JFL3 82 aa2.05□□□□□ -2.08
SF3A1-203ENST00000444440 KRTAP4-4Q9BYR3 166 aa2.02□□□□□ -2.09
SF3A1-203ENST00000444440 MUC19Q7Z5P9 8384 aa1.92□□□□□ -2.1
SF3A1-203ENST00000444440 PRM1P04553 51 aa1.83□□□□□ -2.12
SF3A1-203ENST00000444440 KRTAP21-1Q3LI58 79 aa1.52□□□□□ -2.17
SF3A1-203ENST00000444440 MUC16Q8WXI7 14507 aa1.37□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 13.2 ms