RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 MT1XP80297 61 aa3.22□□□□□ -1.89
CD44-211ENST00000442151 P0C880 135 aa3.21□□□□□ -1.89
CD44-211ENST00000442151 LINC01554Q52M75 96 aa3.21□□□□□ -1.89
CD44-211ENST00000442151 CHKB-CPT1BH3BT56 60 aa3.19□□□□□ -1.9
CD44-211ENST00000442151 PRO0628Q9UI54 55 aa3.19□□□□□ -1.9
CD44-211ENST00000442151 SPANXA2-OT1Q8N9U9 137 aa3.19□□□□□ -1.9
CD44-211ENST00000442151 CAMK2N1Q7Z7J9 78 aa3.16□□□□□ -1.9
CD44-211ENST00000442151 HMCN1Q96RW7 5635 aa3.16□□□□□ -1.9
CD44-211ENST00000442151 KRTAP2-1Q9BYU5 128 aa3.16□□□□□ -1.9
CD44-211ENST00000442151 SPRR2DP22532 72 aa3.13□□□□□ -1.91
CD44-211ENST00000442151 MT3P25713 68 aa3.12□□□□□ -1.91
CD44-211ENST00000442151 KRTAP10-12P60413 245 aa3.1□□□□□ -1.91
CD44-211ENST00000442151 Q1T7F1 81 aa3.07□□□□□ -1.92
CD44-211ENST00000442151 COA5Q86WW8 74 aa3.04□□□□□ -1.92
CD44-211ENST00000442151 PMAIP1Q13794 54 aa3.01□□□□□ -1.93
CD44-211ENST00000442151 LINC01558Q9Y6Z2 57 aa2.98□□□□□ -1.93
CD44-211ENST00000442151 KRTAP5-8O75690 187 aa2.98□□□□□ -1.93
CD44-211ENST00000442151 LUZP6Q538Z0 58 aa2.98□□□□□ -1.93
CD44-211ENST00000442151 DSTQ03001 7570 aaKnown RBP2.97□□□□□ -1.93
CD44-211ENST00000442151 A0A1B0GU33 70 aa2.95□□□□□ -1.94
CD44-211ENST00000442151 BRK1Q8WUW1 75 aa2.94□□□□□ -1.94
CD44-211ENST00000442151 PRR15LQ9BU68 103 aa2.94□□□□□ -1.94
CD44-211ENST00000442151 GPR98Q8WXG9 6306 aa2.94□□□□□ -1.94
CD44-211ENST00000442151 KRTAP13-4Q3LI77 160 aa2.93□□□□□ -1.94
CD44-211ENST00000442151 SPINT4Q6UDR6 99 aa2.93□□□□□ -1.94
CD44-211ENST00000442151 A0A0D9SG42 100 aa2.92□□□□□ -1.94
CD44-211ENST00000442151 PP632Q6XCG6 107 aa2.9□□□□□ -1.95
CD44-211ENST00000442151 KRTAP19-3Q7Z4W3 81 aa2.9□□□□□ -1.95
CD44-211ENST00000442151 A6NED7 52 aa2.89□□□□□ -1.95
CD44-211ENST00000442151 CDC42SE1Q9NRR8 79 aa2.89□□□□□ -1.95
CD44-211ENST00000442151 A0A1B0GU69 56 aa2.89□□□□□ -1.95
CD44-211ENST00000442151 K7ERS5 55 aa2.89□□□□□ -1.95
CD44-211ENST00000442151 MT1EP04732 61 aa2.88□□□□□ -1.95
CD44-211ENST00000442151 SPATA8Q6RVD6 105 aa2.88□□□□□ -1.95
CD44-211ENST00000442151 MT1GP13640 62 aa2.87□□□□□ -1.95
CD44-211ENST00000442151 KRTAP19-7Q3SYF9 63 aa2.87□□□□□ -1.95
CD44-211ENST00000442151 UQCR11O14957 56 aa2.84□□□□□ -1.95
CD44-211ENST00000442151 KRTAP12-1P59990 96 aa2.84□□□□□ -1.95
CD44-211ENST00000442151 TNP1P09430 55 aa2.83□□□□□ -1.96
CD44-211ENST00000442151 LCE3AQ5TA76 89 aa2.83□□□□□ -1.96
CD44-211ENST00000442151 KRTAP19-5Q3LI72 72 aa2.81□□□□□ -1.96
CD44-211ENST00000442151 MIR22HGQ0VDD5 57 aa2.8□□□□□ -1.96
CD44-211ENST00000442151 A8MU10 97 aa2.79□□□□□ -1.96
CD44-211ENST00000442151 C10orf95Q9H7T3 257 aa2.77□□□□□ -1.97
CD44-211ENST00000442151 KTN1-AS1Q86SY8 53 aa2.75□□□□□ -1.97
CD44-211ENST00000442151 MT1MQ8N339 61 aa2.75□□□□□ -1.97
CD44-211ENST00000442151 MT1LQ93083 61 aa2.74□□□□□ -1.97
CD44-211ENST00000442151 MT4P47944 62 aa2.7□□□□□ -1.98
CD44-211ENST00000442151 AHNAK2Q8IVF2 5795 aa2.67□□□□□ -1.98
CD44-211ENST00000442151 KRTAP12-3P60328 96 aa2.66□□□□□ -1.98
CD44-211ENST00000442151 KRTAP25-1Q3LHN0 102 aa2.64□□□□□ -1.99
CD44-211ENST00000442151 LCE1FQ5T754 118 aa2.62□□□□□ -1.99
CD44-211ENST00000442151 KRTAP5-10Q6L8G5 202 aa2.61□□□□□ -1.99
CD44-211ENST00000442151 KRTAP5-5Q701N2 237 aaPredicted RBP2.61□□□□□ -1.99
CD44-211ENST00000442151 KRTAP12-4P60329 112 aa2.58□□□□□ -2
CD44-211ENST00000442151 LCE1CQ5T751 118 aa2.58□□□□□ -2
CD44-211ENST00000442151 LCE1BQ5T7P3 118 aa2.58□□□□□ -2
CD44-211ENST00000442151 ROMO1P60602 79 aa2.56□□□□□ -2
CD44-211ENST00000442151 SPRR5A0A1B0GTR4 108 aa2.56□□□□□ -2
CD44-211ENST00000442151 KRTAP5-7Q6L8G8 165 aa2.53□□□□□ -2
CD44-211ENST00000442151 KRTAP20-2Q3LI61 65 aa2.52□□□□□ -2.01
CD44-211ENST00000442151 LCE3CQ5T5A8 94 aa2.47□□□□□ -2.01
CD44-211ENST00000442151 SYNE1Q8NF91 8797 aaKnown RBP2.38□□□□□ -2.03
CD44-211ENST00000442151 MT1AP04731 61 aa2.36□□□□□ -2.03
CD44-211ENST00000442151 KRTAP6-1Q3LI64 71 aa2.3□□□□□ -2.04
CD44-211ENST00000442151 MUC5BQ9HC84 5762 aaPredicted RBP2.25□□□□□ -2.05
CD44-211ENST00000442151 MUC5ACP98088 5654 aa2.23□□□□□ -2.05
CD44-211ENST00000442151 KRTAP6-2Q3LI66 62 aa2.23□□□□□ -2.05
CD44-211ENST00000442151 AHNAKQ09666 5890 aaKnown RBP2.22□□□□□ -2.05
CD44-211ENST00000442151 LCE3EQ5T5B0 92 aa2.21□□□□□ -2.05
CD44-211ENST00000442151 MUC19Q7Z5P9 8384 aa2.19□□□□□ -2.06
CD44-211ENST00000442151 INE1O15225 51 aa2.04□□□□□ -2.08
CD44-211ENST00000442151 LCE3DQ9BYE3 92 aa1.97□□□□□ -2.09
CD44-211ENST00000442151 KRTAP21-2Q3LI59 83 aa1.87□□□□□ -2.11
CD44-211ENST00000442151 PHGR1C9JFL3 82 aa1.55□□□□□ -2.16
CD44-211ENST00000442151 PRM1P04553 51 aa1.32□□□□□ -2.2
CD44-211ENST00000442151 KRTAP21-1Q3LI58 79 aa1.2□□□□□ -2.22
CD44-211ENST00000442151 MUC16Q8WXI7 14507 aa0.98□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 80.9 ms