RNA–Protein interactions for RNA: ENST00000435070.6

CPSF6-202, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF6, Length 6,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-202ENST00000435070 KRTAP9-3Q9BYQ3 159 aa2.54□□□□□ -2
CPSF6-202ENST00000435070 OBSCNQ5VST9 7968 aa2.52□□□□□ -2.01
CPSF6-202ENST00000435070 LCE2BO14633 110 aa2.49□□□□□ -2.01
CPSF6-202ENST00000435070 SYNE1Q8NF91 8797 aaKnown RBP2.49□□□□□ -2.01
CPSF6-202ENST00000435070 KRTAP19-7Q3SYF9 63 aa2.48□□□□□ -2.01
CPSF6-202ENST00000435070 LOC100996750A0A140TA64 210 aa2.47□□□□□ -2.01
CPSF6-202ENST00000435070 MT1GP13640 62 aa2.47□□□□□ -2.01
CPSF6-202ENST00000435070 DSTQ03001 7570 aaKnown RBP2.46□□□□□ -2.01
CPSF6-202ENST00000435070 FCGBPQ9Y6R7 5405 aaPredicted RBP2.46□□□□□ -2.01
CPSF6-202ENST00000435070 KRTAP4-3Q9BYR4 195 aa2.43□□□□□ -2.02
CPSF6-202ENST00000435070 MT1LQ93083 61 aa2.43□□□□□ -2.02
CPSF6-202ENST00000435070 LCE3DQ9BYE3 92 aa2.39□□□□□ -2.03
CPSF6-202ENST00000435070 FSIP2Q5CZC0 6907 aa2.38□□□□□ -2.03
CPSF6-202ENST00000435070 LCE3EQ5T5B0 92 aa2.38□□□□□ -2.03
CPSF6-202ENST00000435070 MT1EP04732 61 aa2.37□□□□□ -2.03
CPSF6-202ENST00000435070 KRTAP4-9Q9BYQ8 210 aa2.37□□□□□ -2.03
CPSF6-202ENST00000435070 MUC12Q9UKN1 5478 aa2.35□□□□□ -2.03
CPSF6-202ENST00000435070 LCE2DQ5TA82 110 aaPredicted RBP2.34□□□□□ -2.04
CPSF6-202ENST00000435070 MT4P47944 62 aa2.32□□□□□ -2.04
CPSF6-202ENST00000435070 PRM1P04553 51 aa2.28□□□□□ -2.04
CPSF6-202ENST00000435070 KRTAP9-7A8MTY7 169 aa2.27□□□□□ -2.05
CPSF6-202ENST00000435070 SSPOA2VEC9 5147 aa2.25□□□□□ -2.05
CPSF6-202ENST00000435070 KRTAP9-2Q9BYQ4 174 aa2.24□□□□□ -2.05
CPSF6-202ENST00000435070 MT1MQ8N339 61 aa2.21□□□□□ -2.06
CPSF6-202ENST00000435070 LCE1BQ5T7P3 118 aa2.2□□□□□ -2.06
CPSF6-202ENST00000435070 KRTAP19-3Q7Z4W3 81 aa2.19□□□□□ -2.06
CPSF6-202ENST00000435070 LCE1DQ5T752 114 aa2.17□□□□□ -2.06
CPSF6-202ENST00000435070 SYNE2Q8WXH0 6885 aaKnown RBP2.16□□□□□ -2.06
CPSF6-202ENST00000435070 KRTAP5-5Q701N2 237 aaPredicted RBP2.16□□□□□ -2.06
CPSF6-202ENST00000435070 KRTAP6-3Q3LI67 103 aa2.13□□□□□ -2.07
CPSF6-202ENST00000435070 LCE4AQ5TA78 99 aa2.12□□□□□ -2.07
CPSF6-202ENST00000435070 LCE1AQ5T7P2 110 aa2.12□□□□□ -2.07
CPSF6-202ENST00000435070 KRTAP9-6A0A140TA67 174 aa2.11□□□□□ -2.07
CPSF6-202ENST00000435070 KRTAP6-1Q3LI64 71 aa2.11□□□□□ -2.07
CPSF6-202ENST00000435070 LCE5AQ5TCM9 118 aa2.1□□□□□ -2.07
CPSF6-202ENST00000435070 LCE2AQ5TA79 106 aaPredicted RBP2.09□□□□□ -2.07
CPSF6-202ENST00000435070 KRTAP6-2Q3LI66 62 aa2.08□□□□□ -2.08
CPSF6-202ENST00000435070 MT1AP04731 61 aa2.08□□□□□ -2.08
CPSF6-202ENST00000435070 KRTAP20-1Q3LI63 56 aa2.07□□□□□ -2.08
CPSF6-202ENST00000435070 KRTAP19-6Q3LI70 58 aa2.07□□□□□ -2.08
CPSF6-202ENST00000435070 LCE1EQ5T753 118 aa2.06□□□□□ -2.08
CPSF6-202ENST00000435070 MUC19Q7Z5P9 8384 aa2.04□□□□□ -2.08
CPSF6-202ENST00000435070 KRTAP2-2Q9BYT5 123 aa2.01□□□□□ -2.09
CPSF6-202ENST00000435070 LCE1CQ5T751 118 aa1.98□□□□□ -2.09
CPSF6-202ENST00000435070 LCE1FQ5T754 118 aa1.98□□□□□ -2.09
CPSF6-202ENST00000435070 MDN1Q9NU22 5596 aa1.96□□□□□ -2.1
CPSF6-202ENST00000435070 MACF1Q9UPN3 7388 aaKnown RBP1.91□□□□□ -2.1
CPSF6-202ENST00000435070 KRTAP9-4Q9BYQ2 154 aa1.85□□□□□ -2.11
CPSF6-202ENST00000435070 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.8□□□□□ -2.12
CPSF6-202ENST00000435070 KRTAP9-9Q9BYP9 154 aa1.74□□□□□ -2.13
CPSF6-202ENST00000435070 KRTAP4-11Q9BYQ6 195 aa1.73□□□□□ -2.13
CPSF6-202ENST00000435070 KRTAP20-2Q3LI61 65 aa1.63□□□□□ -2.15
CPSF6-202ENST00000435070 MUC5ACP98088 5654 aa1.63□□□□□ -2.15
CPSF6-202ENST00000435070 KRTAP4-2Q9BYR5 136 aa1.63□□□□□ -2.15
CPSF6-202ENST00000435070 KRTAP5-9P26371 169 aa1.57□□□□□ -2.16
CPSF6-202ENST00000435070 KRTAP4-6Q9BYQ5 205 aa1.56□□□□□ -2.16
CPSF6-202ENST00000435070 KRTAP4-4Q9BYR3 166 aa1.54□□□□□ -2.16
CPSF6-202ENST00000435070 KRTAP4-12Q9BQ66 201 aa1.53□□□□□ -2.16
CPSF6-202ENST00000435070 KRTAP5-10Q6L8G5 202 aa1.51□□□□□ -2.17
CPSF6-202ENST00000435070 KRTAP5-4Q6L8H1 288 aa1.47□□□□□ -2.17
CPSF6-202ENST00000435070 HMCN1Q96RW7 5635 aa1.43□□□□□ -2.18
CPSF6-202ENST00000435070 KRTAP5-2Q701N4 177 aa1.41□□□□□ -2.18
CPSF6-202ENST00000435070 NEBP20929 6669 aa1.4□□□□□ -2.18
CPSF6-202ENST00000435070 KRTAP5-1Q6L8H4 278 aa1.37□□□□□ -2.19
CPSF6-202ENST00000435070 KRTAP5-3Q6L8H2 238 aa1.36□□□□□ -2.19
CPSF6-202ENST00000435070 KRTAP21-1Q3LI58 79 aa1.34□□□□□ -2.2
CPSF6-202ENST00000435070 KRTAP21-2Q3LI59 83 aa1.29□□□□□ -2.2
CPSF6-202ENST00000435070 GPR98Q8WXG9 6306 aa1.29□□□□□ -2.2
CPSF6-202ENST00000435070 MUC5BQ9HC84 5762 aaPredicted RBP1.27□□□□□ -2.21
CPSF6-202ENST00000435070 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.25□□□□□ -2.21
CPSF6-202ENST00000435070 PHGR1C9JFL3 82 aa1.23□□□□□ -2.21
CPSF6-202ENST00000435070 KRTAP5-8O75690 187 aa1.08□□□□□ -2.24
CPSF6-202ENST00000435070 AHNAK2Q8IVF2 5795 aa1.07□□□□□ -2.24
CPSF6-202ENST00000435070 KRTAP5-7Q6L8G8 165 aa1.03□□□□□ -2.24
CPSF6-202ENST00000435070 KRTAP5-11Q6L8G4 156 aa1.03□□□□□ -2.24
CPSF6-202ENST00000435070 AHNAKQ09666 5890 aaKnown RBP0.8□□□□□ -2.28
CPSF6-202ENST00000435070 MUC16Q8WXI7 14507 aa0.71□□□□□ -2.3
Retrieved 77 of 20,778 RNA–protein pairs in 11.7 ms