RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 KRTAP12-3P60328 96 aa3.22□□□□□ -1.89
CD44-208ENST00000428726 KRTAP4-7Q9BYR0 210 aa3.21□□□□□ -1.9
CD44-208ENST00000428726 KRTAP19-5Q3LI72 72 aa3.2□□□□□ -1.9
CD44-208ENST00000428726 SYNE2Q8WXH0 6885 aaKnown RBP3.18□□□□□ -1.9
CD44-208ENST00000428726 SYNE1Q8NF91 8797 aaKnown RBP3.17□□□□□ -1.9
CD44-208ENST00000428726 MACF1Q9UPN3 7388 aaKnown RBP3.13□□□□□ -1.91
CD44-208ENST00000428726 KRTAP9-2Q9BYQ4 174 aa3.11□□□□□ -1.91
CD44-208ENST00000428726 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.11□□□□□ -1.91
CD44-208ENST00000428726 CRCT1Q9UGL9 99 aa3.08□□□□□ -1.92
CD44-208ENST00000428726 MDN1Q9NU22 5596 aa3.05□□□□□ -1.92
CD44-208ENST00000428726 KRTAP4-3Q9BYR4 195 aa3.04□□□□□ -1.92
CD44-208ENST00000428726 LCE3BQ5TA77 95 aa3.02□□□□□ -1.93
CD44-208ENST00000428726 KRTAP4-12Q9BQ66 201 aa3.02□□□□□ -1.93
CD44-208ENST00000428726 KRTAP9-6A8MVA2 160 aa3.01□□□□□ -1.93
CD44-208ENST00000428726 KRTAP19-7Q3SYF9 63 aa3□□□□□ -1.93
CD44-208ENST00000428726 LCE3CQ5T5A8 94 aa2.99□□□□□ -1.93
CD44-208ENST00000428726 KRTAP19-6Q3LI70 58 aa2.93□□□□□ -1.94
CD44-208ENST00000428726 LCE1AQ5T7P2 110 aa2.91□□□□□ -1.94
CD44-208ENST00000428726 MT1EP04732 61 aa2.89□□□□□ -1.95
CD44-208ENST00000428726 MT1GP13640 62 aa2.89□□□□□ -1.95
CD44-208ENST00000428726 MT1LQ93083 61 aa2.88□□□□□ -1.95
CD44-208ENST00000428726 SPRR2FQ96RM1 72 aa2.88□□□□□ -1.95
CD44-208ENST00000428726 LCE1DQ5T752 114 aa2.86□□□□□ -1.95
CD44-208ENST00000428726 INE1O15225 51 aa2.85□□□□□ -1.95
CD44-208ENST00000428726 LCE1FQ5T754 118 aa2.85□□□□□ -1.95
CD44-208ENST00000428726 KRTAP5-3Q6L8H2 238 aa2.84□□□□□ -1.96
CD44-208ENST00000428726 KRTAP4-9Q9BYQ8 210 aa2.84□□□□□ -1.96
CD44-208ENST00000428726 KRTAP4-2Q9BYR5 136 aa2.82□□□□□ -1.96
CD44-208ENST00000428726 KRTAP2-3P0C7H8 128 aa2.74□□□□□ -1.97
CD44-208ENST00000428726 KRTAP2-4Q9BYR9 128 aa2.74□□□□□ -1.97
CD44-208ENST00000428726 KRTAP2-1Q9BYU5 128 aa2.74□□□□□ -1.97
CD44-208ENST00000428726 MT1MQ8N339 61 aa2.73□□□□□ -1.97
CD44-208ENST00000428726 KRTAP19-3Q7Z4W3 81 aa2.72□□□□□ -1.97
CD44-208ENST00000428726 MT3P25713 68 aa2.69□□□□□ -1.98
CD44-208ENST00000428726 KRTAP4-11Q9BYQ6 195 aa2.63□□□□□ -1.99
CD44-208ENST00000428726 KRTAP2-2Q9BYT5 123 aa2.63□□□□□ -1.99
CD44-208ENST00000428726 SPRR2EP22531 72 aa2.6□□□□□ -1.99
CD44-208ENST00000428726 SPRR2BP35325 72 aa2.6□□□□□ -1.99
CD44-208ENST00000428726 SPRR2AP35326 72 aa2.6□□□□□ -1.99
CD44-208ENST00000428726 KRTAP12-4P60329 112 aa2.59□□□□□ -2
CD44-208ENST00000428726 KRTAP6-1Q3LI64 71 aa2.55□□□□□ -2
CD44-208ENST00000428726 KRTAP5-9P26371 169 aa2.51□□□□□ -2.01
CD44-208ENST00000428726 SPRR2DP22532 72 aa2.47□□□□□ -2.01
CD44-208ENST00000428726 LCE3EQ5T5B0 92 aa2.44□□□□□ -2.02
CD44-208ENST00000428726 MT1AP04731 61 aa2.43□□□□□ -2.02
CD44-208ENST00000428726 KRTAP5-5Q701N2 237 aaPredicted RBP2.39□□□□□ -2.03
CD44-208ENST00000428726 NEBP20929 6669 aa2.38□□□□□ -2.03
CD44-208ENST00000428726 MT4P47944 62 aa2.36□□□□□ -2.03
CD44-208ENST00000428726 KRTAP6-3Q3LI67 103 aa2.34□□□□□ -2.03
CD44-208ENST00000428726 KRTAP6-2Q3LI66 62 aa2.33□□□□□ -2.04
CD44-208ENST00000428726 LCE3DQ9BYE3 92 aa2.32□□□□□ -2.04
CD44-208ENST00000428726 PRM1P04553 51 aa2.31□□□□□ -2.04
CD44-208ENST00000428726 LCE1EQ5T753 118 aa2.28□□□□□ -2.04
CD44-208ENST00000428726 HMCN1Q96RW7 5635 aa2.25□□□□□ -2.05
CD44-208ENST00000428726 KRTAP5-4Q6L8H1 288 aa2.16□□□□□ -2.06
CD44-208ENST00000428726 MUC5ACP98088 5654 aa2.09□□□□□ -2.08
CD44-208ENST00000428726 MUC19Q7Z5P9 8384 aa2.09□□□□□ -2.08
CD44-208ENST00000428726 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.08□□□□□ -2.08
CD44-208ENST00000428726 KRTAP20-2Q3LI61 65 aa2.04□□□□□ -2.08
CD44-208ENST00000428726 LCE1BQ5T7P3 118 aa2.03□□□□□ -2.08
CD44-208ENST00000428726 KRTAP5-2Q701N4 177 aa2□□□□□ -2.09
CD44-208ENST00000428726 KRTAP20-1Q3LI63 56 aa1.95□□□□□ -2.1
CD44-208ENST00000428726 MUC5BQ9HC84 5762 aaPredicted RBP1.9□□□□□ -2.1
CD44-208ENST00000428726 AHNAK2Q8IVF2 5795 aa1.87□□□□□ -2.11
CD44-208ENST00000428726 KRTAP4-4Q9BYR3 166 aa1.77□□□□□ -2.13
CD44-208ENST00000428726 KRTAP5-11Q6L8G4 156 aa1.73□□□□□ -2.13
CD44-208ENST00000428726 KRTAP5-10Q6L8G5 202 aa1.72□□□□□ -2.13
CD44-208ENST00000428726 LCE1CQ5T751 118 aa1.71□□□□□ -2.14
CD44-208ENST00000428726 GPR98Q8WXG9 6306 aa1.7□□□□□ -2.14
CD44-208ENST00000428726 KRTAP5-1Q6L8H4 278 aa1.69□□□□□ -2.14
CD44-208ENST00000428726 KRTAP5-8O75690 187 aa1.63□□□□□ -2.15
CD44-208ENST00000428726 KRTAP5-7Q6L8G8 165 aa1.61□□□□□ -2.15
CD44-208ENST00000428726 KRTAP21-2Q3LI59 83 aa1.57□□□□□ -2.16
CD44-208ENST00000428726 AHNAKQ09666 5890 aaKnown RBP1.45□□□□□ -2.18
CD44-208ENST00000428726 KRTAP21-1Q3LI58 79 aa1.32□□□□□ -2.2
CD44-208ENST00000428726 PHGR1C9JFL3 82 aa1.27□□□□□ -2.21
CD44-208ENST00000428726 MUC16Q8WXI7 14507 aa0.82□□□□□ -2.28
Retrieved 77 of 20,778 RNA–protein pairs in 123.2 ms