RNA–Protein interactions for RNA: ENST00000381897.5

RFC1-202, Transcript of replication factor C subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RFC1, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-202ENST00000381897 SPRR2DP22532 72 aa2.09□□□□□ -2.07
RFC1-202ENST00000381897 KRTAP20-1Q3LI63 56 aa2.08□□□□□ -2.08
RFC1-202ENST00000381897 LCE3EQ5T5B0 92 aa2.06□□□□□ -2.08
RFC1-202ENST00000381897 KRTAP19-5Q3LI72 72 aa2.04□□□□□ -2.08
RFC1-202ENST00000381897 MT1XP80297 61 aa2.04□□□□□ -2.08
RFC1-202ENST00000381897 KRTAP9-8Q9BYQ0 159 aa2.02□□□□□ -2.09
RFC1-202ENST00000381897 LCE3DQ9BYE3 92 aa2□□□□□ -2.09
RFC1-202ENST00000381897 MT1BP07438 61 aa1.99□□□□□ -2.09
RFC1-202ENST00000381897 KRTAP12-4P60329 112 aa1.99□□□□□ -2.09
RFC1-202ENST00000381897 KRTAP2-3P0C7H8 128 aa1.97□□□□□ -2.09
RFC1-202ENST00000381897 KRTAP2-4Q9BYR9 128 aa1.97□□□□□ -2.09
RFC1-202ENST00000381897 KRTAP4-8A0A0G2JLE6 195 aa1.95□□□□□ -2.1
RFC1-202ENST00000381897 KRTAP4-8Q9BYQ9 185 aa1.95□□□□□ -2.1
RFC1-202ENST00000381897 KRTAP6-3Q3LI67 103 aa1.95□□□□□ -2.1
RFC1-202ENST00000381897 LCE1FQ5T754 118 aa1.95□□□□□ -2.1
RFC1-202ENST00000381897 KRTAP2-1Q9BYU5 128 aa1.94□□□□□ -2.1
RFC1-202ENST00000381897 KRTAP9-3Q9BYQ3 159 aa1.92□□□□□ -2.1
RFC1-202ENST00000381897 KRTAP2-2Q9BYT5 123 aa1.92□□□□□ -2.1
RFC1-202ENST00000381897 KRTAP19-6Q3LI70 58 aa1.91□□□□□ -2.1
RFC1-202ENST00000381897 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.91□□□□□ -2.1
RFC1-202ENST00000381897 KRTAP4-7Q9BYR0 210 aa1.9□□□□□ -2.11
RFC1-202ENST00000381897 GPR98Q8WXG9 6306 aa1.88□□□□□ -2.11
RFC1-202ENST00000381897 DSTQ03001 7570 aaKnown RBP1.88□□□□□ -2.11
RFC1-202ENST00000381897 MT1GP13640 62 aa1.86□□□□□ -2.11
RFC1-202ENST00000381897 LCE1DQ5T752 114 aa1.84□□□□□ -2.11
RFC1-202ENST00000381897 LCE1AQ5T7P2 110 aa1.84□□□□□ -2.12
RFC1-202ENST00000381897 MUC12Q9UKN1 5478 aa1.83□□□□□ -2.12
RFC1-202ENST00000381897 MT1LQ93083 61 aa1.82□□□□□ -2.12
RFC1-202ENST00000381897 SSPOA2VEC9 5147 aa1.82□□□□□ -2.12
RFC1-202ENST00000381897 FCGBPQ9Y6R7 5405 aaPredicted RBP1.82□□□□□ -2.12
RFC1-202ENST00000381897 SYNE1Q8NF91 8797 aaKnown RBP1.82□□□□□ -2.12
RFC1-202ENST00000381897 MT1EP04732 61 aa1.81□□□□□ -2.12
RFC1-202ENST00000381897 SYNE2Q8WXH0 6885 aaKnown RBP1.81□□□□□ -2.12
RFC1-202ENST00000381897 KRTAP9-9Q9BYP9 154 aa1.8□□□□□ -2.12
RFC1-202ENST00000381897 KRTAP9-6A8MVA2 160 aa1.79□□□□□ -2.12
RFC1-202ENST00000381897 LCE1EQ5T753 118 aa1.79□□□□□ -2.12
RFC1-202ENST00000381897 KRTAP4-3Q9BYR4 195 aa1.78□□□□□ -2.12
RFC1-202ENST00000381897 KRTAP19-7Q3SYF9 63 aa1.76□□□□□ -2.13
RFC1-202ENST00000381897 KRTAP19-3Q7Z4W3 81 aa1.76□□□□□ -2.13
RFC1-202ENST00000381897 MT4P47944 62 aa1.75□□□□□ -2.13
RFC1-202ENST00000381897 PRM1P04553 51 aa1.73□□□□□ -2.13
RFC1-202ENST00000381897 NEBP20929 6669 aa1.72□□□□□ -2.13
RFC1-202ENST00000381897 MACF1Q9UPN3 7388 aaKnown RBP1.72□□□□□ -2.13
RFC1-202ENST00000381897 MT1AP04731 61 aa1.7□□□□□ -2.14
RFC1-202ENST00000381897 MT1MQ8N339 61 aa1.68□□□□□ -2.14
RFC1-202ENST00000381897 KRTAP4-12Q9BQ66 201 aa1.66□□□□□ -2.14
RFC1-202ENST00000381897 MDN1Q9NU22 5596 aa1.65□□□□□ -2.14
RFC1-202ENST00000381897 KRTAP4-9Q9BYQ8 210 aa1.63□□□□□ -2.15
RFC1-202ENST00000381897 KRTAP5-3Q6L8H2 238 aa1.62□□□□□ -2.15
RFC1-202ENST00000381897 KRTAP4-2Q9BYR5 136 aa1.62□□□□□ -2.15
RFC1-202ENST00000381897 MUC19Q7Z5P9 8384 aa1.6□□□□□ -2.15
RFC1-202ENST00000381897 KRTAP4-11Q9BYQ6 195 aa1.56□□□□□ -2.16
RFC1-202ENST00000381897 KRTAP5-9P26371 169 aa1.55□□□□□ -2.16
RFC1-202ENST00000381897 KRTAP6-2Q3LI66 62 aa1.53□□□□□ -2.16
RFC1-202ENST00000381897 LCE1BQ5T7P3 118 aa1.52□□□□□ -2.17
RFC1-202ENST00000381897 KRTAP6-1Q3LI64 71 aa1.51□□□□□ -2.17
RFC1-202ENST00000381897 KRTAP5-5Q701N2 237 aaPredicted RBP1.46□□□□□ -2.18
RFC1-202ENST00000381897 AHNAK2Q8IVF2 5795 aa1.46□□□□□ -2.18
RFC1-202ENST00000381897 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.44□□□□□ -2.18
RFC1-202ENST00000381897 LCE1CQ5T751 118 aa1.43□□□□□ -2.18
RFC1-202ENST00000381897 HMCN1Q96RW7 5635 aa1.41□□□□□ -2.18
RFC1-202ENST00000381897 KRTAP5-4Q6L8H1 288 aa1.35□□□□□ -2.19
RFC1-202ENST00000381897 KRTAP20-2Q3LI61 65 aa1.29□□□□□ -2.2
RFC1-202ENST00000381897 KRTAP5-2Q701N4 177 aa1.25□□□□□ -2.21
RFC1-202ENST00000381897 AHNAKQ09666 5890 aaKnown RBP1.25□□□□□ -2.21
RFC1-202ENST00000381897 MUC5ACP98088 5654 aa1.17□□□□□ -2.22
RFC1-202ENST00000381897 MUC5BQ9HC84 5762 aaPredicted RBP1.17□□□□□ -2.22
RFC1-202ENST00000381897 KRTAP5-7Q6L8G8 165 aa1.13□□□□□ -2.23
RFC1-202ENST00000381897 KRTAP5-10Q6L8G5 202 aa1.08□□□□□ -2.24
RFC1-202ENST00000381897 PHGR1C9JFL3 82 aa1.08□□□□□ -2.24
RFC1-202ENST00000381897 KRTAP4-4Q9BYR3 166 aa1.07□□□□□ -2.24
RFC1-202ENST00000381897 KRTAP5-8O75690 187 aa1.06□□□□□ -2.24
RFC1-202ENST00000381897 KRTAP21-1Q3LI58 79 aa1□□□□□ -2.25
RFC1-202ENST00000381897 KRTAP5-1Q6L8H4 278 aa1□□□□□ -2.25
RFC1-202ENST00000381897 KRTAP5-11Q6L8G4 156 aa0.95□□□□□ -2.26
RFC1-202ENST00000381897 KRTAP21-2Q3LI59 83 aa0.9□□□□□ -2.26
RFC1-202ENST00000381897 MUC16Q8WXI7 14507 aa0.58□□□□□ -2.32
Retrieved 77 of 20,778 RNA–protein pairs in 11.6 ms