RNA–Protein interactions for RNA: ENST00000381897.5

RFC1-202, Transcript of replication factor C subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RFC1, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-202ENST00000381897 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.08□□□□□ -1.763e-58■■■■■ 199
RFC1-202ENST00000381897 SMNDC1O75940 238 aaKnown RBP eCLIP6.04□□□□□ -1.441e-46■■■■■ 202.3
RFC1-202ENST00000381897 RBM22Q9NW64 420 aaKnown RBP eCLIP5.51□□□□□ -1.534e-18■■■■■ 95.2
RFC1-202ENST00000381897 SF3A3Q12874 501 aaKnown RBP eCLIP6.04□□□□□ -1.443e-17■■■■■ 113.7
RFC1-202ENST00000381897 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.4□□□□□ -1.541e-14■■■■■ 56.1
RFC1-202ENST00000381897 SF3B1O75533 1304 aaKnown RBP eCLIP5.76□□□□□ -1.495e-13■■■■■ 102
RFC1-202ENST00000381897 EFTUD2Q15029 972 aaKnown RBP eCLIP5.8□□□□□ -1.482e-11■■■■■ 78.5
RFC1-202ENST00000381897 G3BP1Q13283 466 aaKnown RBP eCLIP6.48□□□□□ -1.372e-11■■■■□ 21.6
RFC1-202ENST00000381897 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP5.81□□□□□ -1.481e-9■■□□□ 11.4
RFC1-202ENST00000381897 PPIGQ13427 754 aaKnown RBP eCLIP5.45□□□□□ -1.541e-9■■■■■ 46.1
RFC1-202ENST00000381897 GPKOWQ92917 476 aaPredicted RBP eCLIP5.97□□□□□ -1.452e-9■■■■□ 21
RFC1-202ENST00000381897 AKAP1Q92667 903 aaKnown RBP eCLIP5.77□□□□□ -1.494e-9■■■■■ 32.4
RFC1-202ENST00000381897 LSM11P83369 360 aaKnown RBP eCLIP5.07□□□□□ -1.68e-9■■■■■ 51
RFC1-202ENST00000381897 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.59□□□□□ -1.361e-8■■■■■ 60
RFC1-202ENST00000381897 UPF1Q92900 1129 aaKnown RBP eCLIP6.75□□□□□ -1.334e-8■■■■■ 27.9
RFC1-202ENST00000381897 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.75□□□□□ -1.336e-8■■■■■ 98.3
RFC1-202ENST00000381897 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.5□□□□□ -1.371e-7■■■■□ 19.8
RFC1-202ENST00000381897 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.44□□□□□ -1.541e-7■■■■■ 43.3
RFC1-202ENST00000381897 SF3B4Q15427 424 aaKnown RBP eCLIP5.56□□□□□ -1.521e-7■■■□□ 16
RFC1-202ENST00000381897 ZNF622Q969S3 477 aaKnown RBP eCLIP6.77□□□□□ -1.331e-7■■□□□ 14.5
RFC1-202ENST00000381897 AGGF1Q8N302 714 aaeCLIP6.1□□□□□ -1.431e-7■□□□□ 9.2
RFC1-202ENST00000381897 AQRO60306 1485 aaKnown RBP eCLIP7.1□□□□□ -1.272e-7■■■■■ 35.5
RFC1-202ENST00000381897 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.29□□□□□ -1.43e-7■■■■□ 21.4
RFC1-202ENST00000381897 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.01□□□□□ -1.453e-7■■■■■ 46
RFC1-202ENST00000381897 CDC40O60508 579 aaKnown RBP eCLIP5.73□□□□□ -1.494e-7■■■■□ 26.3
RFC1-202ENST00000381897 EIF3DO15371 548 aaKnown RBP eCLIP5.89□□□□□ -1.475e-7■■■■□ 24.8
RFC1-202ENST00000381897 PRPF4O43172 522 aaKnown RBP eCLIP5.99□□□□□ -1.455e-7■■■■□ 24.4
RFC1-202ENST00000381897 KHSRPQ92945 711 aaKnown RBP eCLIP5.49□□□□□ -1.536e-7■■■■□ 21.8
RFC1-202ENST00000381897 PUM1Q14671 1186 aaKnown RBP eCLIP5.6□□□□□ -1.516e-7■■■□□ 16.1
RFC1-202ENST00000381897 PABPN1Q86U42 306 aaKnown RBP eCLIP7.89□□□□□ -1.157e-7■□□□□ 10.4
RFC1-202ENST00000381897 QKIQ96PU8 341 aaKnown RBP eCLIP5.65□□□□□ -1.518e-7■■■■■ 119.2
RFC1-202ENST00000381897 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.52□□□□□ -1.218e-7■■■□□ 16.6
RFC1-202ENST00000381897 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.01□□□□□ -1.451e-6■■■□□ 15.4
RFC1-202ENST00000381897 MTPAPQ9NVV4 582 aaKnown RBP eCLIP5.54□□□□□ -1.521e-6■□□□□ 8.6
RFC1-202ENST00000381897 HLTFQ14527 1009 aaKnown RBP eCLIP6.27□□□□□ -1.411e-6■■■□□ 14.6
RFC1-202ENST00000381897 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.32□□□□□ -1.41e-6■■■■□ 21.2
RFC1-202ENST00000381897 FXR2P51116 673 aaKnown RBP eCLIP6.17□□□□□ -1.422e-6■■■□□ 18.9
RFC1-202ENST00000381897 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.27□□□□□ -1.413e-6■■■■■ 50.8
RFC1-202ENST00000381897 RBM15Q96T37 977 aaKnown RBP eCLIP5.91□□□□□ -1.464e-6■□□□□ 8.3
RFC1-202ENST00000381897 NIPBLQ6KC79 2804 aaeCLIP3.79□□□□□ -1.84e-6■■■■□ 20.9
RFC1-202ENST00000381897 YBX3P16989 372 aaKnown RBP eCLIP5.58□□□□□ -1.524e-6■■■□□ 16.7
RFC1-202ENST00000381897 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.25□□□□□ -1.575e-6■■□□□ 11.7
RFC1-202ENST00000381897 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.51□□□□□ -1.377e-6■■□□□ 11.5
RFC1-202ENST00000381897 AARSP49588 968 aaKnown RBP eCLIP6.26□□□□□ -1.418e-6■■■■■ 52.4
RFC1-202ENST00000381897 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.57□□□□□ -1.528e-6■■■□□ 18.6
Retrieved 45 of 45 RNA–protein pairs in 76.8 ms