RNA–Protein interactions for RNA: ENST00000380749.9

HMGN1-204, Transcript of high mobility group nucleosome binding domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN1, Length 1,383 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-204ENST00000380749 A8MU10 97 aa6.03□□□□□ -1.44
HMGN1-204ENST00000380749 KRTAP9-9Q9BYP9 154 aa5.98□□□□□ -1.45
HMGN1-204ENST00000380749 KRTAP9-4Q9BYQ2 154 aa5.98□□□□□ -1.45
HMGN1-204ENST00000380749 KRTAP4-3Q9BYR4 195 aa5.97□□□□□ -1.45
HMGN1-204ENST00000380749 KRTAP5-4Q6L8H1 288 aa5.96□□□□□ -1.45
HMGN1-204ENST00000380749 PRR15LQ9BU68 103 aa5.88□□□□□ -1.47
HMGN1-204ENST00000380749 KRTAP5-10Q6L8G5 202 aa5.83□□□□□ -1.48
HMGN1-204ENST00000380749 KRTAP12-3P60328 96 aa5.81□□□□□ -1.48
HMGN1-204ENST00000380749 ANAPC13Q9BS18 74 aa5.81□□□□□ -1.48
HMGN1-204ENST00000380749 KRTAP4-7Q9BYR0 210 aa5.78□□□□□ -1.48
HMGN1-204ENST00000380749 H3BS24 57 aa5.76□□□□□ -1.49
HMGN1-204ENST00000380749 ATP5EP56381 51 aaPredicted RBP5.76□□□□□ -1.49
HMGN1-204ENST00000380749 CCDC179H3BU77 68 aa5.74□□□□□ -1.49
HMGN1-204ENST00000380749 SVIPQ8NHG7 77 aa5.72□□□□□ -1.49
HMGN1-204ENST00000380749 LINC01558Q9Y6Z2 57 aa5.71□□□□□ -1.5
HMGN1-204ENST00000380749 KRTAP20-2Q3LI61 65 aa5.66□□□□□ -1.5
HMGN1-204ENST00000380749 KRTAP5-3Q6L8H2 238 aa5.66□□□□□ -1.5
HMGN1-204ENST00000380749 UQCR11O14957 56 aa5.65□□□□□ -1.51
HMGN1-204ENST00000380749 KRTAP5-7Q6L8G8 165 aa5.64□□□□□ -1.51
HMGN1-204ENST00000380749 KRTAP5-5Q701N2 237 aaPredicted RBP5.64□□□□□ -1.51
HMGN1-204ENST00000380749 SYNE1Q8NF91 8797 aaKnown RBP5.62□□□□□ -1.51
HMGN1-204ENST00000380749 SPRR5A0A1B0GTR4 108 aa5.62□□□□□ -1.51
HMGN1-204ENST00000380749 KRTAP25-1Q3LHN0 102 aa5.59□□□□□ -1.51
HMGN1-204ENST00000380749 KRTAP12-4P60329 112 aa5.58□□□□□ -1.52
HMGN1-204ENST00000380749 TMEM258P61165 79 aa5.49□□□□□ -1.53
HMGN1-204ENST00000380749 MIR22HGQ0VDD5 57 aa5.49□□□□□ -1.53
HMGN1-204ENST00000380749 KRTAP19-4Q3LI73 84 aa5.49□□□□□ -1.53
HMGN1-204ENST00000380749 K7ERS5 55 aa5.48□□□□□ -1.53
HMGN1-204ENST00000380749 KRTAP4-2Q9BYR5 136 aa5.47□□□□□ -1.53
HMGN1-204ENST00000380749 KRTAP15-1Q3LI76 137 aa5.36□□□□□ -1.55
HMGN1-204ENST00000380749 KRTAP4-11Q9BYQ6 195 aa5.36□□□□□ -1.55
HMGN1-204ENST00000380749 KRTAP23-1A1A580 65 aa5.35□□□□□ -1.55
HMGN1-204ENST00000380749 LCE3CQ5T5A8 94 aa5.32□□□□□ -1.56
HMGN1-204ENST00000380749 V9GYY9 64 aa5.27□□□□□ -1.57
HMGN1-204ENST00000380749 PSPHP1O15172 72 aa5.26□□□□□ -1.57
HMGN1-204ENST00000380749 MT1AP04731 61 aa5.21□□□□□ -1.58
HMGN1-204ENST00000380749 KRTAP5-2Q701N4 177 aa5.19□□□□□ -1.58
HMGN1-204ENST00000380749 KRTAP6-1Q3LI64 71 aa5.17□□□□□ -1.58
HMGN1-204ENST00000380749 Q1T7F1 81 aa5.16□□□□□ -1.58
HMGN1-204ENST00000380749 CDC42SE1Q9NRR8 79 aa5.14□□□□□ -1.59
HMGN1-204ENST00000380749 AHNAKQ09666 5890 aaKnown RBP5.13□□□□□ -1.59
HMGN1-204ENST00000380749 A6NED7 52 aa5.1□□□□□ -1.59
HMGN1-204ENST00000380749 OBSCNQ5VST9 7968 aa5.08□□□□□ -1.6
HMGN1-204ENST00000380749 RPS28P62857 69 aaKnown RBP5.07□□□□□ -1.6
HMGN1-204ENST00000380749 MUC5BQ9HC84 5762 aaPredicted RBP5.06□□□□□ -1.6
HMGN1-204ENST00000380749 MUC5ACP98088 5654 aa5.05□□□□□ -1.6
HMGN1-204ENST00000380749 KRTAP5-8O75690 187 aa5.03□□□□□ -1.6
HMGN1-204ENST00000380749 ROMO1P60602 79 aa5.02□□□□□ -1.61
HMGN1-204ENST00000380749 KRTAP9-6A8MVA2 160 aa4.99□□□□□ -1.61
HMGN1-204ENST00000380749 KRTAP6-2Q3LI66 62 aa4.99□□□□□ -1.61
HMGN1-204ENST00000380749 PCP4P48539 62 aa4.84□□□□□ -1.63
HMGN1-204ENST00000380749 MT3P25713 68 aa4.78□□□□□ -1.64
HMGN1-204ENST00000380749 KRTAP5-1Q6L8H4 278 aa4.68□□□□□ -1.66
HMGN1-204ENST00000380749 A0A0A0MQY5 61 aa4.6□□□□□ -1.67
HMGN1-204ENST00000380749 LCE1EQ5T753 118 aa4.43□□□□□ -1.7
HMGN1-204ENST00000380749 LCE1BQ5T7P3 118 aa4.19□□□□□ -1.74
HMGN1-204ENST00000380749 LCE1CQ5T751 118 aa4.12□□□□□ -1.75
HMGN1-204ENST00000380749 BRK1Q8WUW1 75 aa4.1□□□□□ -1.75
HMGN1-204ENST00000380749 PRO0628Q9UI54 55 aa4.03□□□□□ -1.76
HMGN1-204ENST00000380749 PRAC1Q96KF2 57 aa3.85□□□□□ -1.79
HMGN1-204ENST00000380749 PMAIP1Q13794 54 aa3.82□□□□□ -1.8
HMGN1-204ENST00000380749 LCE3DQ9BYE3 92 aa3.8□□□□□ -1.8
HMGN1-204ENST00000380749 KRTAP5-11Q6L8G4 156 aa3.76□□□□□ -1.81
HMGN1-204ENST00000380749 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.72□□□□□ -1.81
HMGN1-204ENST00000380749 LCE1FQ5T754 118 aa3.7□□□□□ -1.82
HMGN1-204ENST00000380749 KTN1-AS1Q86SY8 53 aa3.63□□□□□ -1.83
HMGN1-204ENST00000380749 LCE3EQ5T5B0 92 aa3.54□□□□□ -1.84
HMGN1-204ENST00000380749 NDUFAF8A1L188 74 aa3.44□□□□□ -1.86
HMGN1-204ENST00000380749 PHGR1C9JFL3 82 aa3.43□□□□□ -1.86
HMGN1-204ENST00000380749 KRTAP21-2Q3LI59 83 aa3.4□□□□□ -1.86
HMGN1-204ENST00000380749 LUZP6Q538Z0 58 aa3.26□□□□□ -1.89
HMGN1-204ENST00000380749 MUC19Q7Z5P9 8384 aa3.18□□□□□ -1.9
HMGN1-204ENST00000380749 KRTAP4-4Q9BYR3 166 aa3.14□□□□□ -1.91
HMGN1-204ENST00000380749 KRTAP21-1Q3LI58 79 aa2.61□□□□□ -1.99
HMGN1-204ENST00000380749 INE1O15225 51 aa2.55□□□□□ -2
HMGN1-204ENST00000380749 PRM1P04553 51 aa2.55□□□□□ -2
HMGN1-204ENST00000380749 MUC16Q8WXI7 14507 aa2.22□□□□□ -2.05
Retrieved 77 of 20,778 RNA–protein pairs in 10.4 ms