RNA–Protein interactions for RNA: ENST00000376707.4

VSX1-201, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene VSX1, Length 943 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-201ENST00000376707 A8MU10 97 aa7.56□□□□□ -1.2
VSX1-201ENST00000376707 MT1MQ8N339 61 aa7.49□□□□□ -1.21
VSX1-201ENST00000376707 CCDC179H3BU77 68 aa7.47□□□□□ -1.21
VSX1-201ENST00000376707 MT1LQ93083 61 aa7.47□□□□□ -1.21
VSX1-201ENST00000376707 ATP5EP56381 51 aaPredicted RBP7.44□□□□□ -1.22
VSX1-201ENST00000376707 C10orf95Q9H7T3 257 aa7.44□□□□□ -1.22
VSX1-201ENST00000376707 TNP1P09430 55 aa7.42□□□□□ -1.22
VSX1-201ENST00000376707 PRR15LQ9BU68 103 aa7.42□□□□□ -1.22
VSX1-201ENST00000376707 MT4P47944 62 aa7.41□□□□□ -1.22
VSX1-201ENST00000376707 LCE3AQ5TA76 89 aa7.4□□□□□ -1.22
VSX1-201ENST00000376707 HMCN1Q96RW7 5635 aa7.38□□□□□ -1.23
VSX1-201ENST00000376707 LINC01558Q9Y6Z2 57 aa7.34□□□□□ -1.23
VSX1-201ENST00000376707 KRTAP4-3Q9BYR4 195 aa7.32□□□□□ -1.24
VSX1-201ENST00000376707 KRTAP5-4Q6L8H1 288 aa7.25□□□□□ -1.25
VSX1-201ENST00000376707 TMEM258P61165 79 aa7.2□□□□□ -1.26
VSX1-201ENST00000376707 AHNAK2Q8IVF2 5795 aa7.2□□□□□ -1.26
VSX1-201ENST00000376707 UQCR11O14957 56 aa7.17□□□□□ -1.26
VSX1-201ENST00000376707 KRTAP12-3P60328 96 aa7.13□□□□□ -1.27
VSX1-201ENST00000376707 KRTAP5-3Q6L8H2 238 aa7.07□□□□□ -1.28
VSX1-201ENST00000376707 KRTAP5-10Q6L8G5 202 aa7.06□□□□□ -1.28
VSX1-201ENST00000376707 MIR22HGQ0VDD5 57 aa6.99□□□□□ -1.29
VSX1-201ENST00000376707 KRTAP25-1Q3LHN0 102 aa6.98□□□□□ -1.29
VSX1-201ENST00000376707 K7ERS5 55 aa6.87□□□□□ -1.31
VSX1-201ENST00000376707 KRTAP20-2Q3LI61 65 aa6.87□□□□□ -1.31
VSX1-201ENST00000376707 KRTAP5-5Q701N2 237 aaPredicted RBP6.87□□□□□ -1.31
VSX1-201ENST00000376707 V9GYY9 64 aa6.84□□□□□ -1.31
VSX1-201ENST00000376707 SPRR5A0A1B0GTR4 108 aa6.82□□□□□ -1.32
VSX1-201ENST00000376707 KRTAP5-7Q6L8G8 165 aa6.82□□□□□ -1.32
VSX1-201ENST00000376707 PSPHP1O15172 72 aa6.8□□□□□ -1.32
VSX1-201ENST00000376707 Q1T7F1 81 aa6.8□□□□□ -1.32
VSX1-201ENST00000376707 KRTAP12-4P60329 112 aa6.79□□□□□ -1.32
VSX1-201ENST00000376707 KRTAP23-1A1A580 65 aa6.75□□□□□ -1.33
VSX1-201ENST00000376707 KRTAP15-1Q3LI76 137 aa6.64□□□□□ -1.35
VSX1-201ENST00000376707 SYNE1Q8NF91 8797 aaKnown RBP6.6□□□□□ -1.35
VSX1-201ENST00000376707 A6NED7 52 aa6.57□□□□□ -1.36
VSX1-201ENST00000376707 LCE3CQ5T5A8 94 aa6.57□□□□□ -1.36
VSX1-201ENST00000376707 CDC42SE1Q9NRR8 79 aa6.51□□□□□ -1.37
VSX1-201ENST00000376707 ROMO1P60602 79 aa6.41□□□□□ -1.38
VSX1-201ENST00000376707 PCP4P48539 62 aa6.36□□□□□ -1.39
VSX1-201ENST00000376707 MT1AP04731 61 aa6.35□□□□□ -1.39
VSX1-201ENST00000376707 RPS28P62857 69 aaKnown RBP6.35□□□□□ -1.39
VSX1-201ENST00000376707 KRTAP6-1Q3LI64 71 aa6.32□□□□□ -1.4
VSX1-201ENST00000376707 KRTAP5-2Q701N4 177 aa6.31□□□□□ -1.4
VSX1-201ENST00000376707 KRTAP9-6A8MVA2 160 aa6.21□□□□□ -1.42
VSX1-201ENST00000376707 KRTAP5-8O75690 187 aa6.11□□□□□ -1.43
VSX1-201ENST00000376707 KRTAP6-2Q3LI66 62 aa6.1□□□□□ -1.43
VSX1-201ENST00000376707 AHNAKQ09666 5890 aaKnown RBP5.99□□□□□ -1.45
VSX1-201ENST00000376707 MUC5ACP98088 5654 aa5.98□□□□□ -1.45
VSX1-201ENST00000376707 OBSCNQ5VST9 7968 aa5.97□□□□□ -1.45
VSX1-201ENST00000376707 MUC5BQ9HC84 5762 aaPredicted RBP5.95□□□□□ -1.46
VSX1-201ENST00000376707 MT3P25713 68 aa5.84□□□□□ -1.47
VSX1-201ENST00000376707 KRTAP5-1Q6L8H4 278 aa5.7□□□□□ -1.5
VSX1-201ENST00000376707 BRK1Q8WUW1 75 aa5.5□□□□□ -1.53
VSX1-201ENST00000376707 LCE1EQ5T753 118 aa5.4□□□□□ -1.54
VSX1-201ENST00000376707 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.29□□□□□ -1.56
VSX1-201ENST00000376707 KRTAP5-11Q6L8G4 156 aa5.27□□□□□ -1.57
VSX1-201ENST00000376707 PMAIP1Q13794 54 aa5.21□□□□□ -1.58
VSX1-201ENST00000376707 LCE1BQ5T7P3 118 aa5.13□□□□□ -1.59
VSX1-201ENST00000376707 PRO0628Q9UI54 55 aa5.02□□□□□ -1.61
VSX1-201ENST00000376707 LCE1CQ5T751 118 aa5□□□□□ -1.61
VSX1-201ENST00000376707 PRAC1Q96KF2 57 aa5□□□□□ -1.61
VSX1-201ENST00000376707 SVIPQ8NHG7 77 aa4.84□□□□□ -1.63
VSX1-201ENST00000376707 KTN1-AS1Q86SY8 53 aa4.74□□□□□ -1.65
VSX1-201ENST00000376707 LCE3DQ9BYE3 92 aa4.71□□□□□ -1.66
VSX1-201ENST00000376707 LCE1FQ5T754 118 aa4.48□□□□□ -1.69
VSX1-201ENST00000376707 LCE3EQ5T5B0 92 aa4.42□□□□□ -1.7
VSX1-201ENST00000376707 KRTAP4-4Q9BYR3 166 aa4.42□□□□□ -1.7
VSX1-201ENST00000376707 LUZP6Q538Z0 58 aa4.26□□□□□ -1.73
VSX1-201ENST00000376707 KRTAP21-2Q3LI59 83 aa4.16□□□□□ -1.74
VSX1-201ENST00000376707 PHGR1C9JFL3 82 aa4.15□□□□□ -1.75
VSX1-201ENST00000376707 A0A0A0MQY5 61 aa4.01□□□□□ -1.77
VSX1-201ENST00000376707 MUC19Q7Z5P9 8384 aa3.68□□□□□ -1.82
VSX1-201ENST00000376707 NDUFAF8A1L188 74 aa3.57□□□□□ -1.84
VSX1-201ENST00000376707 PRM1P04553 51 aa3.26□□□□□ -1.89
VSX1-201ENST00000376707 KRTAP21-1Q3LI58 79 aa3.15□□□□□ -1.91
VSX1-201ENST00000376707 INE1O15225 51 aa3.01□□□□□ -1.93
VSX1-201ENST00000376707 MUC16Q8WXI7 14507 aa2.56□□□□□ -2
Retrieved 77 of 20,778 RNA–protein pairs in 10.1 ms