RNA–Protein interactions for RNA: ENST00000375661.5

LSM2-208, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM2, Length 876 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM2-208ENST00000375661 KRTAP23-1A1A580 65 aa4.58□□□□□ -1.68
LSM2-208ENST00000375661 K7ERS5 55 aa4.58□□□□□ -1.68
LSM2-208ENST00000375661 PRO0628Q9UI54 55 aa4.58□□□□□ -1.68
LSM2-208ENST00000375661 TNP1P09430 55 aa4.55□□□□□ -1.68
LSM2-208ENST00000375661 KRTAP19-3Q7Z4W3 81 aa4.55□□□□□ -1.68
LSM2-208ENST00000375661 KRTAP19-7Q3SYF9 63 aa4.53□□□□□ -1.68
LSM2-208ENST00000375661 LCE1DQ5T752 114 aa4.53□□□□□ -1.68
LSM2-208ENST00000375661 CDC42SE1Q9NRR8 79 aa4.53□□□□□ -1.68
LSM2-208ENST00000375661 MT1EP04732 61 aa4.51□□□□□ -1.69
LSM2-208ENST00000375661 LCE4AQ5TA78 99 aa4.48□□□□□ -1.69
LSM2-208ENST00000375661 LCE3AQ5TA76 89 aa4.47□□□□□ -1.69
LSM2-208ENST00000375661 KRTAP19-5Q3LI72 72 aa4.44□□□□□ -1.7
LSM2-208ENST00000375661 MT1GP13640 62 aa4.43□□□□□ -1.7
LSM2-208ENST00000375661 KRTAP25-1Q3LHN0 102 aa4.43□□□□□ -1.7
LSM2-208ENST00000375661 PMAIP1Q13794 54 aa4.42□□□□□ -1.7
LSM2-208ENST00000375661 MT4P47944 62 aa4.41□□□□□ -1.7
LSM2-208ENST00000375661 PP632Q6XCG6 107 aa4.4□□□□□ -1.71
LSM2-208ENST00000375661 HMCN1Q96RW7 5635 aa4.4□□□□□ -1.71
LSM2-208ENST00000375661 KRTAP5-10Q6L8G5 202 aa4.39□□□□□ -1.71
LSM2-208ENST00000375661 AHNAK2Q8IVF2 5795 aa4.38□□□□□ -1.71
LSM2-208ENST00000375661 ROMO1P60602 79 aa4.36□□□□□ -1.71
LSM2-208ENST00000375661 KRTAP5-4Q6L8H1 288 aa4.33□□□□□ -1.72
LSM2-208ENST00000375661 MT1MQ8N339 61 aa4.31□□□□□ -1.72
LSM2-208ENST00000375661 BRK1Q8WUW1 75 aa4.31□□□□□ -1.72
LSM2-208ENST00000375661 KRTAP12-3P60328 96 aa4.29□□□□□ -1.72
LSM2-208ENST00000375661 KRTAP5-7Q6L8G8 165 aa4.29□□□□□ -1.72
LSM2-208ENST00000375661 MT1LQ93083 61 aa4.28□□□□□ -1.72
LSM2-208ENST00000375661 KRTAP4-6Q9BYQ5 205 aa4.26□□□□□ -1.73
LSM2-208ENST00000375661 PRAC1Q96KF2 57 aa4.23□□□□□ -1.73
LSM2-208ENST00000375661 KRTAP5-3Q6L8H2 238 aa4.22□□□□□ -1.73
LSM2-208ENST00000375661 KRTAP4-3Q9BYR4 195 aa4.18□□□□□ -1.74
LSM2-208ENST00000375661 KRTAP15-1Q3LI76 137 aa4.1□□□□□ -1.75
LSM2-208ENST00000375661 KRTAP4-7Q9BYR0 210 aa4.1□□□□□ -1.75
LSM2-208ENST00000375661 KRTAP20-2Q3LI61 65 aa4.09□□□□□ -1.75
LSM2-208ENST00000375661 KTN1-AS1Q86SY8 53 aa4.08□□□□□ -1.76
LSM2-208ENST00000375661 SPRR5A0A1B0GTR4 108 aa4.07□□□□□ -1.76
LSM2-208ENST00000375661 KRTAP19-4Q3LI73 84 aa4.04□□□□□ -1.76
LSM2-208ENST00000375661 KRTAP5-5Q701N2 237 aaPredicted RBP4□□□□□ -1.77
LSM2-208ENST00000375661 KRTAP12-4P60329 112 aa3.99□□□□□ -1.77
LSM2-208ENST00000375661 LCE3CQ5T5A8 94 aa3.97□□□□□ -1.77
LSM2-208ENST00000375661 LUZP6Q538Z0 58 aa3.9□□□□□ -1.79
LSM2-208ENST00000375661 LOC100996750A0A140TA64 210 aa3.87□□□□□ -1.79
LSM2-208ENST00000375661 SYNE1Q8NF91 8797 aaKnown RBP3.86□□□□□ -1.79
LSM2-208ENST00000375661 KRTAP4-11Q9BYQ6 195 aa3.82□□□□□ -1.8
LSM2-208ENST00000375661 KRTAP9-6A8MVA2 160 aa3.78□□□□□ -1.8
LSM2-208ENST00000375661 KRTAP5-2Q701N4 177 aa3.74□□□□□ -1.81
LSM2-208ENST00000375661 NDUFAF8A1L188 74 aa3.73□□□□□ -1.81
LSM2-208ENST00000375661 AHNAKQ09666 5890 aaKnown RBP3.7□□□□□ -1.82
LSM2-208ENST00000375661 KRTAP5-8O75690 187 aa3.69□□□□□ -1.82
LSM2-208ENST00000375661 MUC5ACP98088 5654 aa3.68□□□□□ -1.82
LSM2-208ENST00000375661 MT1AP04731 61 aa3.64□□□□□ -1.83
LSM2-208ENST00000375661 MUC5BQ9HC84 5762 aaPredicted RBP3.61□□□□□ -1.83
LSM2-208ENST00000375661 KRTAP6-1Q3LI64 71 aa3.61□□□□□ -1.83
LSM2-208ENST00000375661 KRTAP9-9Q9BYP9 154 aa3.58□□□□□ -1.84
LSM2-208ENST00000375661 OBSCNQ5VST9 7968 aa3.57□□□□□ -1.84
LSM2-208ENST00000375661 KRTAP9-4Q9BYQ2 154 aa3.54□□□□□ -1.84
LSM2-208ENST00000375661 KRTAP6-2Q3LI66 62 aa3.5□□□□□ -1.85
LSM2-208ENST00000375661 KRTAP5-1Q6L8H4 278 aa3.4□□□□□ -1.87
LSM2-208ENST00000375661 MT3P25713 68 aa3.34□□□□□ -1.87
LSM2-208ENST00000375661 LCE1EQ5T753 118 aa3.17□□□□□ -1.9
LSM2-208ENST00000375661 KRTAP4-2Q9BYR5 136 aa2.99□□□□□ -1.93
LSM2-208ENST00000375661 INE1O15225 51 aa2.98□□□□□ -1.93
LSM2-208ENST00000375661 LCE1BQ5T7P3 118 aa2.95□□□□□ -1.94
LSM2-208ENST00000375661 LCE1CQ5T751 118 aa2.94□□□□□ -1.94
LSM2-208ENST00000375661 LCE3DQ9BYE3 92 aa2.91□□□□□ -1.94
LSM2-208ENST00000375661 LCE3EQ5T5B0 92 aa2.79□□□□□ -1.96
LSM2-208ENST00000375661 KRTAP4-12Q9BQ66 201 aa2.78□□□□□ -1.96
LSM2-208ENST00000375661 KRTAP5-11Q6L8G4 156 aa2.72□□□□□ -1.97
LSM2-208ENST00000375661 LCE1FQ5T754 118 aa2.71□□□□□ -1.98
LSM2-208ENST00000375661 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.64□□□□□ -1.99
LSM2-208ENST00000375661 PHGR1C9JFL3 82 aa2.57□□□□□ -2
LSM2-208ENST00000375661 KRTAP21-2Q3LI59 83 aa2.38□□□□□ -2.03
LSM2-208ENST00000375661 PRM1P04553 51 aa2.26□□□□□ -2.05
LSM2-208ENST00000375661 MUC19Q7Z5P9 8384 aa2.21□□□□□ -2.06
LSM2-208ENST00000375661 KRTAP4-4Q9BYR3 166 aa2.19□□□□□ -2.06
LSM2-208ENST00000375661 KRTAP21-1Q3LI58 79 aa1.98□□□□□ -2.09
LSM2-208ENST00000375661 MUC16Q8WXI7 14507 aa1.66□□□□□ -2.14
Retrieved 77 of 20,778 RNA–protein pairs in 99.7 ms