RNA–Protein interactions for RNA: ENST00000357388.7

SMC4-202, Transcript of structural maintenance of chromosomes 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC4, Length 5,471 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-202ENST00000357388 LRP2P98164 4655 aa3.71□□□□□ -1.82
SMC4-202ENST00000357388 KRTAP19-2Q3LHN2 52 aa3.7□□□□□ -1.82
SMC4-202ENST00000357388 LCE5AQ5TCM9 118 aa3.69□□□□□ -1.82
SMC4-202ENST00000357388 LOC100996750A0A140TA64 210 aa3.67□□□□□ -1.82
SMC4-202ENST00000357388 KRTAP4-3Q9BYR4 195 aa3.62□□□□□ -1.83
SMC4-202ENST00000357388 KMT2CQ8NEZ4 4911 aaKnown RBP3.6□□□□□ -1.83
SMC4-202ENST00000357388 KMT2AQ03164 3969 aa3.6□□□□□ -1.83
SMC4-202ENST00000357388 LCE1AQ5T7P2 110 aa3.59□□□□□ -1.83
SMC4-202ENST00000357388 KRTAP9-7A8MTY7 169 aa3.55□□□□□ -1.84
SMC4-202ENST00000357388 KRTAP6-3Q3LI67 103 aa3.54□□□□□ -1.84
SMC4-202ENST00000357388 KRTAP19-7Q3SYF9 63 aa3.53□□□□□ -1.84
SMC4-202ENST00000357388 LCE2AQ5TA79 106 aaPredicted RBP3.52□□□□□ -1.85
SMC4-202ENST00000357388 LCE4AQ5TA78 99 aa3.51□□□□□ -1.85
SMC4-202ENST00000357388 HECTD4Q9Y4D8 3996 aa3.5□□□□□ -1.85
SMC4-202ENST00000357388 KRTAP6-2Q3LI66 62 aa3.5□□□□□ -1.85
SMC4-202ENST00000357388 MUC17Q685J3 4493 aa3.49□□□□□ -1.85
SMC4-202ENST00000357388 KRTAP4-9Q9BYQ8 210 aa3.47□□□□□ -1.85
SMC4-202ENST00000357388 ABCA13Q86UQ4 5058 aa3.44□□□□□ -1.86
SMC4-202ENST00000357388 FLGP20930 4061 aaPredicted RBP3.43□□□□□ -1.86
SMC4-202ENST00000357388 LCE1CQ5T751 118 aa3.42□□□□□ -1.86
SMC4-202ENST00000357388 LCE1EQ5T753 118 aa3.42□□□□□ -1.86
SMC4-202ENST00000357388 LCE1FQ5T754 118 aa3.42□□□□□ -1.86
SMC4-202ENST00000357388 KRTAP2-2Q9BYT5 123 aa3.42□□□□□ -1.86
SMC4-202ENST00000357388 SYNE2Q8WXH0 6885 aaKnown RBP3.41□□□□□ -1.86
SMC4-202ENST00000357388 KRTAP9-4Q9BYQ2 154 aa3.39□□□□□ -1.87
SMC4-202ENST00000357388 HYDINQ4G0P3 5121 aa3.37□□□□□ -1.87
SMC4-202ENST00000357388 PKHD1P08F94 4074 aa3.35□□□□□ -1.87
SMC4-202ENST00000357388 OBSCNQ5VST9 7968 aa3.35□□□□□ -1.87
SMC4-202ENST00000357388 RNF213Q63HN8 5207 aa3.34□□□□□ -1.88
SMC4-202ENST00000357388 KRTAP6-1Q3LI64 71 aa3.32□□□□□ -1.88
SMC4-202ENST00000357388 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.32□□□□□ -1.88
SMC4-202ENST00000357388 LPAP08519 4548 aa3.3□□□□□ -1.88
SMC4-202ENST00000357388 UBR4Q5T4S7 5183 aa3.29□□□□□ -1.88
SMC4-202ENST00000357388 KRTAP9-6A8MVA2 160 aa3.26□□□□□ -1.89
SMC4-202ENST00000357388 TNXBP22105 4242 aa3.25□□□□□ -1.89
SMC4-202ENST00000357388 MUC2Q02817 5179 aa3.23□□□□□ -1.89
SMC4-202ENST00000357388 FAT4Q6V0I7 4981 aa3.22□□□□□ -1.89
SMC4-202ENST00000357388 HMCN2Q8NDA2 5059 aa3.2□□□□□ -1.9
SMC4-202ENST00000357388 FSIP2Q5CZC0 6907 aa3.18□□□□□ -1.9
SMC4-202ENST00000357388 KRTAP9-9Q9BYP9 154 aa3.16□□□□□ -1.9
SMC4-202ENST00000357388 MACF1Q9UPN3 7388 aaKnown RBP2.91□□□□□ -1.94
SMC4-202ENST00000357388 GPR98Q8WXG9 6306 aa2.9□□□□□ -1.94
SMC4-202ENST00000357388 KRTAP4-11Q9BYQ6 195 aa2.9□□□□□ -1.95
SMC4-202ENST00000357388 NEBP20929 6669 aa2.85□□□□□ -1.95
SMC4-202ENST00000357388 USH2AO75445 5202 aa2.82□□□□□ -1.96
SMC4-202ENST00000357388 KRTAP5-9P26371 169 aa2.79□□□□□ -1.96
SMC4-202ENST00000357388 DSTQ03001 7570 aaKnown RBP2.78□□□□□ -1.96
SMC4-202ENST00000357388 MUC19Q7Z5P9 8384 aa2.77□□□□□ -1.97
SMC4-202ENST00000357388 KRTAP20-2Q3LI61 65 aa2.76□□□□□ -1.97
SMC4-202ENST00000357388 KMT2DO14686 5537 aa2.75□□□□□ -1.97
SMC4-202ENST00000357388 MUC12Q9UKN1 5478 aa2.75□□□□□ -1.97
SMC4-202ENST00000357388 KRTAP4-6Q9BYQ5 205 aa2.71□□□□□ -1.98
SMC4-202ENST00000357388 FCGBPQ9Y6R7 5405 aaPredicted RBP2.68□□□□□ -1.98
SMC4-202ENST00000357388 KRTAP5-4Q6L8H1 288 aa2.58□□□□□ -2
SMC4-202ENST00000357388 MDN1Q9NU22 5596 aa2.58□□□□□ -2
SMC4-202ENST00000357388 SSPOA2VEC9 5147 aa2.57□□□□□ -2
SMC4-202ENST00000357388 KRTAP4-12Q9BQ66 201 aa2.55□□□□□ -2
SMC4-202ENST00000357388 KRTAP4-2Q9BYR5 136 aa2.55□□□□□ -2
SMC4-202ENST00000357388 KRTAP4-4Q9BYR3 166 aa2.55□□□□□ -2
SMC4-202ENST00000357388 KRTAP5-5Q701N2 237 aaPredicted RBP2.54□□□□□ -2
SMC4-202ENST00000357388 AHNAK2Q8IVF2 5795 aa2.3□□□□□ -2.04
SMC4-202ENST00000357388 KRTAP5-3Q6L8H2 238 aa2.27□□□□□ -2.05
SMC4-202ENST00000357388 MUC5ACP98088 5654 aa2.15□□□□□ -2.07
SMC4-202ENST00000357388 HMCN1Q96RW7 5635 aa2.07□□□□□ -2.08
SMC4-202ENST00000357388 PHGR1C9JFL3 82 aa2.04□□□□□ -2.08
SMC4-202ENST00000357388 KRTAP5-8O75690 187 aa2.02□□□□□ -2.09
SMC4-202ENST00000357388 KRTAP5-10Q6L8G5 202 aa2.01□□□□□ -2.09
SMC4-202ENST00000357388 MUC5BQ9HC84 5762 aaPredicted RBP1.88□□□□□ -2.11
SMC4-202ENST00000357388 KRTAP5-2Q701N4 177 aa1.87□□□□□ -2.11
SMC4-202ENST00000357388 AHNAKQ09666 5890 aaKnown RBP1.82□□□□□ -2.12
SMC4-202ENST00000357388 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.8□□□□□ -2.12
SMC4-202ENST00000357388 KRTAP5-11Q6L8G4 156 aa1.8□□□□□ -2.12
SMC4-202ENST00000357388 KRTAP21-1Q3LI58 79 aa1.74□□□□□ -2.13
SMC4-202ENST00000357388 KRTAP5-1Q6L8H4 278 aa1.71□□□□□ -2.14
SMC4-202ENST00000357388 KRTAP21-2Q3LI59 83 aa1.59□□□□□ -2.16
SMC4-202ENST00000357388 KRTAP5-7Q6L8G8 165 aa1.41□□□□□ -2.18
SMC4-202ENST00000357388 MUC16Q8WXI7 14507 aa1.12□□□□□ -2.23
Retrieved 77 of 20,778 RNA–protein pairs in 8.9 ms