RNA–Protein interactions for RNA: ENST00000300933.8

TPM4-201, Transcript of tropomyosin 4, humanhuman

TSL 1 (best) BASIC

Gene TPM4, Length 2,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-201ENST00000300933 DSTQ03001 7570 aaKnown RBP7.47□□□□□ -1.21
TPM4-201ENST00000300933 KRTAP4-3Q9BYR4 195 aa7.46□□□□□ -1.21
TPM4-201ENST00000300933 SYNE2Q8WXH0 6885 aaKnown RBP7.42□□□□□ -1.22
TPM4-201ENST00000300933 KRTAP2-3P0C7H8 128 aa7.4□□□□□ -1.22
TPM4-201ENST00000300933 KRTAP2-4Q9BYR9 128 aa7.4□□□□□ -1.22
TPM4-201ENST00000300933 KRTAP2-1Q9BYU5 128 aa7.4□□□□□ -1.22
TPM4-201ENST00000300933 LOC100996750A0A140TA64 210 aa7.33□□□□□ -1.24
TPM4-201ENST00000300933 SPRR2FQ96RM1 72 aa7.33□□□□□ -1.24
TPM4-201ENST00000300933 KRTAP9-2Q9BYQ4 174 aa7.33□□□□□ -1.24
TPM4-201ENST00000300933 KRTAP19-3Q7Z4W3 81 aa7.28□□□□□ -1.24
TPM4-201ENST00000300933 MT1MQ8N339 61 aa7.24□□□□□ -1.25
TPM4-201ENST00000300933 MT1GP13640 62 aa7.24□□□□□ -1.25
TPM4-201ENST00000300933 MDN1Q9NU22 5596 aa7.21□□□□□ -1.25
TPM4-201ENST00000300933 KRTAP19-4Q3LI73 84 aa7.21□□□□□ -1.25
TPM4-201ENST00000300933 CRCT1Q9UGL9 99 aa7.2□□□□□ -1.26
TPM4-201ENST00000300933 LCE5AQ5TCM9 118 aa7.08□□□□□ -1.28
TPM4-201ENST00000300933 LCE1AQ5T7P2 110 aa6.83□□□□□ -1.32
TPM4-201ENST00000300933 KRTAP5-9P26371 169 aa6.79□□□□□ -1.32
TPM4-201ENST00000300933 SYNE1Q8NF91 8797 aaKnown RBP6.79□□□□□ -1.32
TPM4-201ENST00000300933 KRTAP12-4P60329 112 aa6.78□□□□□ -1.32
TPM4-201ENST00000300933 SPRR2EP22531 72 aa6.74□□□□□ -1.33
TPM4-201ENST00000300933 SPRR2BP35325 72 aa6.74□□□□□ -1.33
TPM4-201ENST00000300933 SPRR2AP35326 72 aa6.74□□□□□ -1.33
TPM4-201ENST00000300933 LCE3BQ5TA77 95 aa6.6□□□□□ -1.35
TPM4-201ENST00000300933 KRTAP6-1Q3LI64 71 aa6.56□□□□□ -1.36
TPM4-201ENST00000300933 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.55□□□□□ -1.36
TPM4-201ENST00000300933 KRTAP4-9Q9BYQ8 210 aa6.48□□□□□ -1.37
TPM4-201ENST00000300933 SPRR2DP22532 72 aa6.44□□□□□ -1.38
TPM4-201ENST00000300933 KRTAP9-6A0A140TA67 174 aa6.43□□□□□ -1.38
TPM4-201ENST00000300933 KRTAP6-3Q3LI67 103 aa6.4□□□□□ -1.39
TPM4-201ENST00000300933 MT1AP04731 61 aa6.39□□□□□ -1.39
TPM4-201ENST00000300933 KRTAP5-5Q701N2 237 aaPredicted RBP6.39□□□□□ -1.39
TPM4-201ENST00000300933 OBSCNQ5VST9 7968 aa6.34□□□□□ -1.39
TPM4-201ENST00000300933 KRTAP9-7A8MTY7 169 aa6.13□□□□□ -1.43
TPM4-201ENST00000300933 NEBP20929 6669 aa6.12□□□□□ -1.43
TPM4-201ENST00000300933 LCE3DQ9BYE3 92 aa6.12□□□□□ -1.43
TPM4-201ENST00000300933 PRM1P04553 51 aa6.07□□□□□ -1.44
TPM4-201ENST00000300933 KRTAP9-4Q9BYQ2 154 aa6.07□□□□□ -1.44
TPM4-201ENST00000300933 LCE3EQ5T5B0 92 aa6.05□□□□□ -1.44
TPM4-201ENST00000300933 KRTAP6-2Q3LI66 62 aa5.96□□□□□ -1.46
TPM4-201ENST00000300933 MT4P47944 62 aa5.79□□□□□ -1.48
TPM4-201ENST00000300933 KRTAP4-6Q9BYQ5 205 aa5.78□□□□□ -1.48
TPM4-201ENST00000300933 KRTAP5-4Q6L8H1 288 aa5.77□□□□□ -1.49
TPM4-201ENST00000300933 MT3P25713 68 aa5.77□□□□□ -1.49
TPM4-201ENST00000300933 HMCN1Q96RW7 5635 aa5.59□□□□□ -1.51
TPM4-201ENST00000300933 KRTAP20-2Q3LI61 65 aa5.51□□□□□ -1.53
TPM4-201ENST00000300933 LCE4AQ5TA78 99 aa5.47□□□□□ -1.53
TPM4-201ENST00000300933 LCE1DQ5T752 114 aa5.45□□□□□ -1.54
TPM4-201ENST00000300933 KRTAP2-2Q9BYT5 123 aa5.44□□□□□ -1.54
TPM4-201ENST00000300933 KRTAP5-2Q701N4 177 aa5.31□□□□□ -1.56
TPM4-201ENST00000300933 KRTAP20-1Q3LI63 56 aa5.29□□□□□ -1.56
TPM4-201ENST00000300933 KRTAP5-3Q6L8H2 238 aa5.23□□□□□ -1.57
TPM4-201ENST00000300933 MUC5ACP98088 5654 aa4.95□□□□□ -1.62
TPM4-201ENST00000300933 LCE1BQ5T7P3 118 aa4.87□□□□□ -1.63
TPM4-201ENST00000300933 LCE1EQ5T753 118 aa4.77□□□□□ -1.65
TPM4-201ENST00000300933 KRTAP4-11Q9BYQ6 195 aa4.66□□□□□ -1.66
TPM4-201ENST00000300933 KRTAP5-1Q6L8H4 278 aa4.64□□□□□ -1.67
TPM4-201ENST00000300933 KRTAP4-2Q9BYR5 136 aa4.6□□□□□ -1.67
TPM4-201ENST00000300933 AHNAK2Q8IVF2 5795 aa4.54□□□□□ -1.68
TPM4-201ENST00000300933 KRTAP5-10Q6L8G5 202 aa4.52□□□□□ -1.69
TPM4-201ENST00000300933 LCE1CQ5T751 118 aa4.49□□□□□ -1.69
TPM4-201ENST00000300933 KRTAP5-8O75690 187 aa4.45□□□□□ -1.7
TPM4-201ENST00000300933 MUC5BQ9HC84 5762 aaPredicted RBP4.23□□□□□ -1.73
TPM4-201ENST00000300933 KRTAP21-2Q3LI59 83 aa4.21□□□□□ -1.74
TPM4-201ENST00000300933 KRTAP5-7Q6L8G8 165 aa4.18□□□□□ -1.74
TPM4-201ENST00000300933 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.15□□□□□ -1.74
TPM4-201ENST00000300933 GPR98Q8WXG9 6306 aa4.04□□□□□ -1.76
TPM4-201ENST00000300933 KRTAP4-4Q9BYR3 166 aa4.03□□□□□ -1.76
TPM4-201ENST00000300933 KRTAP4-12Q9BQ66 201 aa3.97□□□□□ -1.77
TPM4-201ENST00000300933 MUC19Q7Z5P9 8384 aa3.9□□□□□ -1.79
TPM4-201ENST00000300933 KRTAP5-11Q6L8G4 156 aa3.88□□□□□ -1.79
TPM4-201ENST00000300933 KRTAP9-9Q9BYP9 154 aa3.84□□□□□ -1.79
TPM4-201ENST00000300933 KRTAP21-1Q3LI58 79 aa3.75□□□□□ -1.81
TPM4-201ENST00000300933 LCE1FQ5T754 118 aa3.57□□□□□ -1.84
TPM4-201ENST00000300933 PHGR1C9JFL3 82 aa3.39□□□□□ -1.87
TPM4-201ENST00000300933 AHNAKQ09666 5890 aaKnown RBP3.27□□□□□ -1.89
TPM4-201ENST00000300933 MUC16Q8WXI7 14507 aa2.16□□□□□ -2.06
Retrieved 77 of 20,778 RNA–protein pairs in 80.8 ms