RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 ATP5EP56381 51 aaPredicted RBP5.26□□□□□ -1.57
HMGN3-201ENST00000275036 C10orf95Q9H7T3 257 aa5.23□□□□□ -1.57
HMGN3-201ENST00000275036 LINC01558Q9Y6Z2 57 aa5.21□□□□□ -1.58
HMGN3-201ENST00000275036 PRR15LQ9BU68 103 aa5.2□□□□□ -1.58
HMGN3-201ENST00000275036 GPR98Q8WXG9 6306 aa5.19□□□□□ -1.58
HMGN3-201ENST00000275036 MT1GP13640 62 aa5.18□□□□□ -1.58
HMGN3-201ENST00000275036 LCE3AQ5TA76 89 aa5.18□□□□□ -1.58
HMGN3-201ENST00000275036 TNP1P09430 55 aa5.15□□□□□ -1.59
HMGN3-201ENST00000275036 TMEM258P61165 79 aa5.14□□□□□ -1.59
HMGN3-201ENST00000275036 MT1LQ93083 61 aa5.14□□□□□ -1.59
HMGN3-201ENST00000275036 MT1MQ8N339 61 aa5.13□□□□□ -1.59
HMGN3-201ENST00000275036 PP632Q6XCG6 107 aa5.1□□□□□ -1.59
HMGN3-201ENST00000275036 KRTAP4-3Q9BYR4 195 aa5.06□□□□□ -1.6
HMGN3-201ENST00000275036 UQCR11O14957 56 aa5.05□□□□□ -1.6
HMGN3-201ENST00000275036 HMCN1Q96RW7 5635 aa5.05□□□□□ -1.6
HMGN3-201ENST00000275036 MT4P47944 62 aa4.98□□□□□ -1.61
HMGN3-201ENST00000275036 KRTAP12-3P60328 96 aa4.95□□□□□ -1.62
HMGN3-201ENST00000275036 MIR22HGQ0VDD5 57 aa4.95□□□□□ -1.62
HMGN3-201ENST00000275036 KRTAP5-4Q6L8H1 288 aa4.94□□□□□ -1.62
HMGN3-201ENST00000275036 AHNAK2Q8IVF2 5795 aa4.89□□□□□ -1.63
HMGN3-201ENST00000275036 PSPHP1O15172 72 aa4.88□□□□□ -1.63
HMGN3-201ENST00000275036 KRTAP25-1Q3LHN0 102 aa4.86□□□□□ -1.63
HMGN3-201ENST00000275036 Q1T7F1 81 aa4.84□□□□□ -1.63
HMGN3-201ENST00000275036 V9GYY9 64 aa4.83□□□□□ -1.64
HMGN3-201ENST00000275036 K7ERS5 55 aa4.79□□□□□ -1.64
HMGN3-201ENST00000275036 KRTAP5-10Q6L8G5 202 aa4.74□□□□□ -1.65
HMGN3-201ENST00000275036 KRTAP5-5Q701N2 237 aaPredicted RBP4.74□□□□□ -1.65
HMGN3-201ENST00000275036 KRTAP15-1Q3LI76 137 aa4.71□□□□□ -1.66
HMGN3-201ENST00000275036 A6NED7 52 aa4.68□□□□□ -1.66
HMGN3-201ENST00000275036 KRTAP23-1A1A580 65 aa4.67□□□□□ -1.66
HMGN3-201ENST00000275036 KRTAP20-2Q3LI61 65 aa4.66□□□□□ -1.66
HMGN3-201ENST00000275036 SYNE1Q8NF91 8797 aaKnown RBP4.61□□□□□ -1.67
HMGN3-201ENST00000275036 SPRR5A0A1B0GTR4 108 aa4.59□□□□□ -1.67
HMGN3-201ENST00000275036 CDC42SE1Q9NRR8 79 aa4.58□□□□□ -1.68
HMGN3-201ENST00000275036 LCE3CQ5T5A8 94 aa4.57□□□□□ -1.68
HMGN3-201ENST00000275036 RPS28P62857 69 aaKnown RBP4.56□□□□□ -1.68
HMGN3-201ENST00000275036 KRTAP5-7Q6L8G8 165 aa4.54□□□□□ -1.68
HMGN3-201ENST00000275036 ROMO1P60602 79 aa4.53□□□□□ -1.68
HMGN3-201ENST00000275036 KRTAP12-4P60329 112 aa4.52□□□□□ -1.69
HMGN3-201ENST00000275036 PCP4P48539 62 aa4.49□□□□□ -1.69
HMGN3-201ENST00000275036 KRTAP9-6A8MVA2 160 aa4.37□□□□□ -1.71
HMGN3-201ENST00000275036 KRTAP6-1Q3LI64 71 aa4.37□□□□□ -1.71
HMGN3-201ENST00000275036 MT1AP04731 61 aa4.36□□□□□ -1.71
HMGN3-201ENST00000275036 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.35□□□□□ -1.71
HMGN3-201ENST00000275036 KRTAP5-2Q701N4 177 aa4.32□□□□□ -1.72
HMGN3-201ENST00000275036 KRTAP5-11Q6L8G4 156 aa4.23□□□□□ -1.73
HMGN3-201ENST00000275036 KRTAP6-2Q3LI66 62 aa4.16□□□□□ -1.74
HMGN3-201ENST00000275036 OBSCNQ5VST9 7968 aa4.14□□□□□ -1.75
HMGN3-201ENST00000275036 KRTAP5-8O75690 187 aa4.14□□□□□ -1.75
HMGN3-201ENST00000275036 MUC5BQ9HC84 5762 aaPredicted RBP4.05□□□□□ -1.76
HMGN3-201ENST00000275036 AHNAKQ09666 5890 aaKnown RBP4.05□□□□□ -1.76
HMGN3-201ENST00000275036 MUC5ACP98088 5654 aa4.04□□□□□ -1.76
HMGN3-201ENST00000275036 BRK1Q8WUW1 75 aa4□□□□□ -1.77
HMGN3-201ENST00000275036 MT3P25713 68 aa3.97□□□□□ -1.77
HMGN3-201ENST00000275036 LCE1EQ5T753 118 aa3.97□□□□□ -1.77
HMGN3-201ENST00000275036 KRTAP5-1Q6L8H4 278 aa3.89□□□□□ -1.79
HMGN3-201ENST00000275036 PMAIP1Q13794 54 aa3.74□□□□□ -1.81
HMGN3-201ENST00000275036 PRAC1Q96KF2 57 aa3.68□□□□□ -1.82
HMGN3-201ENST00000275036 KRTAP4-4Q9BYR3 166 aa3.63□□□□□ -1.83
HMGN3-201ENST00000275036 LCE1BQ5T7P3 118 aa3.45□□□□□ -1.86
HMGN3-201ENST00000275036 PRO0628Q9UI54 55 aa3.42□□□□□ -1.86
HMGN3-201ENST00000275036 LCE1CQ5T751 118 aa3.39□□□□□ -1.87
HMGN3-201ENST00000275036 KTN1-AS1Q86SY8 53 aa3.29□□□□□ -1.88
HMGN3-201ENST00000275036 LCE3DQ9BYE3 92 aa3.28□□□□□ -1.88
HMGN3-201ENST00000275036 SVIPQ8NHG7 77 aa3.16□□□□□ -1.9
HMGN3-201ENST00000275036 LCE3EQ5T5B0 92 aa3.08□□□□□ -1.92
HMGN3-201ENST00000275036 LCE1FQ5T754 118 aa3.08□□□□□ -1.92
HMGN3-201ENST00000275036 LUZP6Q538Z0 58 aa3.01□□□□□ -1.93
HMGN3-201ENST00000275036 A0A0A0MQY5 61 aa2.89□□□□□ -1.95
HMGN3-201ENST00000275036 KRTAP21-2Q3LI59 83 aa2.88□□□□□ -1.95
HMGN3-201ENST00000275036 PHGR1C9JFL3 82 aa2.74□□□□□ -1.97
HMGN3-201ENST00000275036 NDUFAF8A1L188 74 aa2.56□□□□□ -2
HMGN3-201ENST00000275036 MUC19Q7Z5P9 8384 aa2.54□□□□□ -2
HMGN3-201ENST00000275036 PRM1P04553 51 aa2.33□□□□□ -2.04
HMGN3-201ENST00000275036 KRTAP21-1Q3LI58 79 aa2.05□□□□□ -2.08
HMGN3-201ENST00000275036 INE1O15225 51 aa1.87□□□□□ -2.11
HMGN3-201ENST00000275036 MUC16Q8WXI7 14507 aa1.8□□□□□ -2.12
Retrieved 77 of 20,778 RNA–protein pairs in 79.7 ms