RNA–Protein interactions for RNA: ENST00000265619.6

VAPB-201, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,596 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-201ENST00000265619 KRTAP4-12Q9BQ66 201 aa3.25□□□□□ -1.89
VAPB-201ENST00000265619 SSPOA2VEC9 5147 aa3.2□□□□□ -1.9
VAPB-201ENST00000265619 LCE3CQ5T5A8 94 aa3.17□□□□□ -1.9
VAPB-201ENST00000265619 KRTAP4-8A0A0G2JLE6 195 aa3.16□□□□□ -1.9
VAPB-201ENST00000265619 KRTAP19-5Q3LI72 72 aa3.14□□□□□ -1.91
VAPB-201ENST00000265619 KRTAP2-3P0C7H8 128 aa3.14□□□□□ -1.91
VAPB-201ENST00000265619 KRTAP2-4Q9BYR9 128 aa3.14□□□□□ -1.91
VAPB-201ENST00000265619 KRTAP2-1Q9BYU5 128 aa3.14□□□□□ -1.91
VAPB-201ENST00000265619 KRTAP4-7Q9BYR0 210 aa3.13□□□□□ -1.91
VAPB-201ENST00000265619 FCGBPQ9Y6R7 5405 aaPredicted RBP3.05□□□□□ -1.92
VAPB-201ENST00000265619 MUC12Q9UKN1 5478 aa3.03□□□□□ -1.93
VAPB-201ENST00000265619 LCE5AQ5TCM9 118 aa3.02□□□□□ -1.93
VAPB-201ENST00000265619 SYNE2Q8WXH0 6885 aaKnown RBP3.02□□□□□ -1.93
VAPB-201ENST00000265619 DSTQ03001 7570 aaKnown RBP3.01□□□□□ -1.93
VAPB-201ENST00000265619 LCE1DQ5T752 114 aa3□□□□□ -1.93
VAPB-201ENST00000265619 MACF1Q9UPN3 7388 aaKnown RBP3□□□□□ -1.93
VAPB-201ENST00000265619 KRTAP19-6Q3LI70 58 aa2.95□□□□□ -1.94
VAPB-201ENST00000265619 KRTAP2-2Q9BYT5 123 aa2.95□□□□□ -1.94
VAPB-201ENST00000265619 CRCT1Q9UGL9 99 aa2.95□□□□□ -1.94
VAPB-201ENST00000265619 KRTAP12-4P60329 112 aa2.92□□□□□ -1.94
VAPB-201ENST00000265619 SPRR2FQ96RM1 72 aa2.91□□□□□ -1.94
VAPB-201ENST00000265619 KRTAP19-7Q3SYF9 63 aa2.89□□□□□ -1.95
VAPB-201ENST00000265619 OBSCNQ5VST9 7968 aa2.85□□□□□ -1.95
VAPB-201ENST00000265619 KRTAP4-3Q9BYR4 195 aa2.84□□□□□ -1.96
VAPB-201ENST00000265619 SYNE1Q8NF91 8797 aaKnown RBP2.83□□□□□ -1.96
VAPB-201ENST00000265619 MDN1Q9NU22 5596 aa2.83□□□□□ -1.96
VAPB-201ENST00000265619 MT1EP04732 61 aa2.83□□□□□ -1.96
VAPB-201ENST00000265619 LCE1AQ5T7P2 110 aa2.82□□□□□ -1.96
VAPB-201ENST00000265619 KRTAP4-11Q9BYQ6 195 aa2.82□□□□□ -1.96
VAPB-201ENST00000265619 MT1LQ93083 61 aa2.81□□□□□ -1.96
VAPB-201ENST00000265619 KRTAP4-9Q9BYQ8 210 aa2.78□□□□□ -1.96
VAPB-201ENST00000265619 LCE1EQ5T753 118 aa2.77□□□□□ -1.97
VAPB-201ENST00000265619 MT1GP13640 62 aa2.75□□□□□ -1.97
VAPB-201ENST00000265619 KRTAP4-2Q9BYR5 136 aa2.73□□□□□ -1.97
VAPB-201ENST00000265619 KRTAP6-3Q3LI67 103 aa2.72□□□□□ -1.97
VAPB-201ENST00000265619 LCE1FQ5T754 118 aa2.71□□□□□ -1.98
VAPB-201ENST00000265619 KRTAP19-3Q7Z4W3 81 aa2.71□□□□□ -1.98
VAPB-201ENST00000265619 SPRR2EP22531 72 aa2.7□□□□□ -1.98
VAPB-201ENST00000265619 SPRR2BP35325 72 aa2.7□□□□□ -1.98
VAPB-201ENST00000265619 SPRR2AP35326 72 aa2.7□□□□□ -1.98
VAPB-201ENST00000265619 MT1MQ8N339 61 aa2.68□□□□□ -1.98
VAPB-201ENST00000265619 PRM1P04553 51 aa2.67□□□□□ -1.98
VAPB-201ENST00000265619 KRTAP5-5Q701N2 237 aaPredicted RBP2.64□□□□□ -1.99
VAPB-201ENST00000265619 KRTAP5-9P26371 169 aa2.61□□□□□ -1.99
VAPB-201ENST00000265619 SPRR2DP22532 72 aa2.57□□□□□ -2
VAPB-201ENST00000265619 MUC19Q7Z5P9 8384 aa2.56□□□□□ -2
VAPB-201ENST00000265619 LCE3EQ5T5B0 92 aa2.54□□□□□ -2
VAPB-201ENST00000265619 MT3P25713 68 aa2.54□□□□□ -2
VAPB-201ENST00000265619 LCE3DQ9BYE3 92 aa2.5□□□□□ -2.01
VAPB-201ENST00000265619 KRTAP6-1Q3LI64 71 aa2.46□□□□□ -2.02
VAPB-201ENST00000265619 MT1AP04731 61 aa2.45□□□□□ -2.02
VAPB-201ENST00000265619 KRTAP6-2Q3LI66 62 aa2.45□□□□□ -2.02
VAPB-201ENST00000265619 NEBP20929 6669 aa2.41□□□□□ -2.02
VAPB-201ENST00000265619 MT4P47944 62 aa2.38□□□□□ -2.03
VAPB-201ENST00000265619 KRTAP5-3Q6L8H2 238 aa2.31□□□□□ -2.04
VAPB-201ENST00000265619 KRTAP20-1Q3LI63 56 aa2.21□□□□□ -2.05
VAPB-201ENST00000265619 KRTAP5-4Q6L8H1 288 aa2.2□□□□□ -2.06
VAPB-201ENST00000265619 HMCN1Q96RW7 5635 aa2.19□□□□□ -2.06
VAPB-201ENST00000265619 KRTAP20-2Q3LI61 65 aa2.09□□□□□ -2.08
VAPB-201ENST00000265619 KRTAP5-2Q701N4 177 aa2□□□□□ -2.09
VAPB-201ENST00000265619 KRTAP5-11Q6L8G4 156 aa1.97□□□□□ -2.09
VAPB-201ENST00000265619 LCE1BQ5T7P3 118 aa1.97□□□□□ -2.09
VAPB-201ENST00000265619 MUC5ACP98088 5654 aa1.94□□□□□ -2.1
VAPB-201ENST00000265619 GPR98Q8WXG9 6306 aa1.9□□□□□ -2.11
VAPB-201ENST00000265619 LCE1CQ5T751 118 aa1.82□□□□□ -2.12
VAPB-201ENST00000265619 AHNAK2Q8IVF2 5795 aa1.82□□□□□ -2.12
VAPB-201ENST00000265619 KRTAP5-10Q6L8G5 202 aa1.81□□□□□ -2.12
VAPB-201ENST00000265619 KRTAP5-7Q6L8G8 165 aa1.77□□□□□ -2.13
VAPB-201ENST00000265619 MUC5BQ9HC84 5762 aaPredicted RBP1.74□□□□□ -2.13
VAPB-201ENST00000265619 KRTAP5-1Q6L8H4 278 aa1.72□□□□□ -2.13
VAPB-201ENST00000265619 KRTAP5-8O75690 187 aa1.7□□□□□ -2.14
VAPB-201ENST00000265619 AHNAKQ09666 5890 aaKnown RBP1.66□□□□□ -2.14
VAPB-201ENST00000265619 KRTAP21-1Q3LI58 79 aa1.66□□□□□ -2.14
VAPB-201ENST00000265619 KRTAP4-4Q9BYR3 166 aa1.63□□□□□ -2.15
VAPB-201ENST00000265619 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.54□□□□□ -2.16
VAPB-201ENST00000265619 KRTAP21-2Q3LI59 83 aa1.54□□□□□ -2.16
VAPB-201ENST00000265619 PHGR1C9JFL3 82 aa1.23□□□□□ -2.21
VAPB-201ENST00000265619 MUC16Q8WXI7 14507 aa0.87□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 12.4 ms