RNA–Protein interactions for RNA: ENST00000223084.7

LSM5-201, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM5, Length 1,295 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-201ENST00000223084 KRTAP10-12P60413 245 aa5.04□□□□□ -1.6
LSM5-201ENST00000223084 UQCR11O14957 56 aa5.03□□□□□ -1.6
LSM5-201ENST00000223084 PSPHP1O15172 72 aa5.03□□□□□ -1.6
LSM5-201ENST00000223084 SPINT4Q6UDR6 99 aa5.02□□□□□ -1.61
LSM5-201ENST00000223084 KRTAP12-1P59990 96 aa4.99□□□□□ -1.61
LSM5-201ENST00000223084 A8MU10 97 aa4.96□□□□□ -1.62
LSM5-201ENST00000223084 SPRR2EP22531 72 aa4.95□□□□□ -1.62
LSM5-201ENST00000223084 SPRR2BP35325 72 aa4.95□□□□□ -1.62
LSM5-201ENST00000223084 SPRR2AP35326 72 aa4.95□□□□□ -1.62
LSM5-201ENST00000223084 MIR22HGQ0VDD5 57 aa4.94□□□□□ -1.62
LSM5-201ENST00000223084 A6NED7 52 aa4.91□□□□□ -1.62
LSM5-201ENST00000223084 LCE1AQ5T7P2 110 aa4.89□□□□□ -1.63
LSM5-201ENST00000223084 SPRR2DP22532 72 aa4.8□□□□□ -1.64
LSM5-201ENST00000223084 CDC42SE1Q9NRR8 79 aa4.8□□□□□ -1.64
LSM5-201ENST00000223084 K7ERS5 55 aa4.79□□□□□ -1.64
LSM5-201ENST00000223084 C10orf95Q9H7T3 257 aa4.78□□□□□ -1.64
LSM5-201ENST00000223084 KRTAP19-7Q3SYF9 63 aa4.76□□□□□ -1.65
LSM5-201ENST00000223084 MT1EP04732 61 aa4.71□□□□□ -1.66
LSM5-201ENST00000223084 KRTAP19-5Q3LI72 72 aa4.7□□□□□ -1.66
LSM5-201ENST00000223084 TNP1P09430 55 aa4.69□□□□□ -1.66
LSM5-201ENST00000223084 LCE3AQ5TA76 89 aa4.65□□□□□ -1.67
LSM5-201ENST00000223084 DSTQ03001 7570 aaKnown RBP4.64□□□□□ -1.67
LSM5-201ENST00000223084 BRK1Q8WUW1 75 aa4.64□□□□□ -1.67
LSM5-201ENST00000223084 KRTAP19-3Q7Z4W3 81 aa4.63□□□□□ -1.67
LSM5-201ENST00000223084 KRTAP25-1Q3LHN0 102 aa4.54□□□□□ -1.68
LSM5-201ENST00000223084 MT1GP13640 62 aa4.53□□□□□ -1.68
LSM5-201ENST00000223084 ROMO1P60602 79 aa4.53□□□□□ -1.68
LSM5-201ENST00000223084 MT1LQ93083 61 aa4.53□□□□□ -1.68
LSM5-201ENST00000223084 PRAC1Q96KF2 57 aa4.49□□□□□ -1.69
LSM5-201ENST00000223084 PP632Q6XCG6 107 aa4.47□□□□□ -1.69
LSM5-201ENST00000223084 MT1MQ8N339 61 aa4.47□□□□□ -1.69
LSM5-201ENST00000223084 HMCN1Q96RW7 5635 aa4.46□□□□□ -1.7
LSM5-201ENST00000223084 AHNAK2Q8IVF2 5795 aa4.46□□□□□ -1.7
LSM5-201ENST00000223084 KRTAP12-3P60328 96 aa4.45□□□□□ -1.7
LSM5-201ENST00000223084 PRO0628Q9UI54 55 aa4.43□□□□□ -1.7
LSM5-201ENST00000223084 KRTAP5-10Q6L8G5 202 aa4.42□□□□□ -1.7
LSM5-201ENST00000223084 KRTAP4-3Q9BYR4 195 aa4.41□□□□□ -1.7
LSM5-201ENST00000223084 PMAIP1Q13794 54 aa4.38□□□□□ -1.71
LSM5-201ENST00000223084 SPRR5A0A1B0GTR4 108 aa4.36□□□□□ -1.71
LSM5-201ENST00000223084 KRTAP5-7Q6L8G8 165 aa4.35□□□□□ -1.71
LSM5-201ENST00000223084 MT4P47944 62 aa4.26□□□□□ -1.73
LSM5-201ENST00000223084 MT3P25713 68 aa4.2□□□□□ -1.74
LSM5-201ENST00000223084 NDUFAF8A1L188 74 aa4.16□□□□□ -1.74
LSM5-201ENST00000223084 KRTAP5-4Q6L8H1 288 aa4.16□□□□□ -1.74
LSM5-201ENST00000223084 KTN1-AS1Q86SY8 53 aa4.15□□□□□ -1.75
LSM5-201ENST00000223084 LCE3CQ5T5A8 94 aa4.12□□□□□ -1.75
LSM5-201ENST00000223084 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.08□□□□□ -1.76
LSM5-201ENST00000223084 KRTAP5-5Q701N2 237 aaPredicted RBP4.07□□□□□ -1.76
LSM5-201ENST00000223084 KRTAP5-11Q6L8G4 156 aa3.95□□□□□ -1.78
LSM5-201ENST00000223084 AHNAKQ09666 5890 aaKnown RBP3.95□□□□□ -1.78
LSM5-201ENST00000223084 KRTAP20-2Q3LI61 65 aa3.93□□□□□ -1.78
LSM5-201ENST00000223084 KRTAP12-4P60329 112 aa3.92□□□□□ -1.78
LSM5-201ENST00000223084 LCE1FQ5T754 118 aa3.92□□□□□ -1.78
LSM5-201ENST00000223084 SYNE1Q8NF91 8797 aaKnown RBP3.92□□□□□ -1.78
LSM5-201ENST00000223084 KRTAP9-6A8MVA2 160 aa3.91□□□□□ -1.78
LSM5-201ENST00000223084 LCE1EQ5T753 118 aa3.86□□□□□ -1.79
LSM5-201ENST00000223084 MUC5ACP98088 5654 aa3.84□□□□□ -1.79
LSM5-201ENST00000223084 MT1AP04731 61 aa3.84□□□□□ -1.79
LSM5-201ENST00000223084 KRTAP6-1Q3LI64 71 aa3.84□□□□□ -1.79
LSM5-201ENST00000223084 MUC5BQ9HC84 5762 aaPredicted RBP3.77□□□□□ -1.81
LSM5-201ENST00000223084 KRTAP5-2Q701N4 177 aa3.68□□□□□ -1.82
LSM5-201ENST00000223084 KRTAP6-2Q3LI66 62 aa3.63□□□□□ -1.83
LSM5-201ENST00000223084 KRTAP5-8O75690 187 aa3.58□□□□□ -1.84
LSM5-201ENST00000223084 KRTAP5-1Q6L8H4 278 aa3.5□□□□□ -1.85
LSM5-201ENST00000223084 LUZP6Q538Z0 58 aa3.44□□□□□ -1.86
LSM5-201ENST00000223084 OBSCNQ5VST9 7968 aa3.43□□□□□ -1.86
LSM5-201ENST00000223084 KRTAP4-4Q9BYR3 166 aa3.37□□□□□ -1.87
LSM5-201ENST00000223084 LCE3EQ5T5B0 92 aa3.33□□□□□ -1.88
LSM5-201ENST00000223084 LCE1BQ5T7P3 118 aa3.02□□□□□ -1.93
LSM5-201ENST00000223084 LCE3DQ9BYE3 92 aa2.99□□□□□ -1.93
LSM5-201ENST00000223084 LCE1CQ5T751 118 aa2.94□□□□□ -1.94
LSM5-201ENST00000223084 PHGR1C9JFL3 82 aa2.65□□□□□ -1.99
LSM5-201ENST00000223084 INE1O15225 51 aa2.63□□□□□ -1.99
LSM5-201ENST00000223084 KRTAP21-2Q3LI59 83 aa2.51□□□□□ -2.01
LSM5-201ENST00000223084 PRM1P04553 51 aa2.33□□□□□ -2.04
LSM5-201ENST00000223084 MUC19Q7Z5P9 8384 aa2.11□□□□□ -2.07
LSM5-201ENST00000223084 KRTAP21-1Q3LI58 79 aa2.01□□□□□ -2.09
LSM5-201ENST00000223084 MUC16Q8WXI7 14507 aa1.49□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 80.4 ms