RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 KRTAP6-3Q3LI67 103 aa1.76□□□□□ -2.13
VPS13D-201ENST00000011700 PCLOQ9Y6V0 5065 aa1.76□□□□□ -2.13
VPS13D-201ENST00000011700 MYCBP2O75592 4640 aa1.76□□□□□ -2.13
VPS13D-201ENST00000011700 MUC17Q685J3 4493 aa1.73□□□□□ -2.13
VPS13D-201ENST00000011700 LCE1EQ5T753 118 aa1.73□□□□□ -2.13
VPS13D-201ENST00000011700 KRTAP2-2Q9BYT5 123 aa1.72□□□□□ -2.13
VPS13D-201ENST00000011700 KRTAP4-8A0A0G2JLE6 195 aa1.72□□□□□ -2.13
VPS13D-201ENST00000011700 KRTAP4-8Q9BYQ9 185 aa1.72□□□□□ -2.13
VPS13D-201ENST00000011700 MT4P47944 62 aa1.71□□□□□ -2.14
VPS13D-201ENST00000011700 HERC2O95714 4834 aa1.71□□□□□ -2.14
VPS13D-201ENST00000011700 LCE1DQ5T752 114 aa1.7□□□□□ -2.14
VPS13D-201ENST00000011700 HYDINQ4G0P3 5121 aa1.68□□□□□ -2.14
VPS13D-201ENST00000011700 LRP2P98164 4655 aa1.68□□□□□ -2.14
VPS13D-201ENST00000011700 LCE1BQ5T7P3 118 aa1.66□□□□□ -2.14
VPS13D-201ENST00000011700 KRTAP9-9Q9BYP9 154 aa1.66□□□□□ -2.14
VPS13D-201ENST00000011700 KRTAP19-2Q3LHN2 52 aa1.66□□□□□ -2.14
VPS13D-201ENST00000011700 BIRC6Q9NR09 4857 aa1.65□□□□□ -2.15
VPS13D-201ENST00000011700 KMT2CQ8NEZ4 4911 aaKnown RBP1.64□□□□□ -2.15
VPS13D-201ENST00000011700 KRTAP19-7Q3SYF9 63 aa1.63□□□□□ -2.15
VPS13D-201ENST00000011700 LPAP08519 4548 aa1.63□□□□□ -2.15
VPS13D-201ENST00000011700 HERC1Q15751 4861 aa1.62□□□□□ -2.15
VPS13D-201ENST00000011700 KRTAP17-1Q9BYP8 105 aa1.59□□□□□ -2.15
VPS13D-201ENST00000011700 OBSCNQ5VST9 7968 aa1.59□□□□□ -2.15
VPS13D-201ENST00000011700 KRTAP6-2Q3LI66 62 aa1.57□□□□□ -2.16
VPS13D-201ENST00000011700 LCE1CQ5T751 118 aa1.56□□□□□ -2.16
VPS13D-201ENST00000011700 KRTAP4-7Q9BYR0 210 aa1.56□□□□□ -2.16
VPS13D-201ENST00000011700 ABCA13Q86UQ4 5058 aa1.55□□□□□ -2.16
VPS13D-201ENST00000011700 SYNE2Q8WXH0 6885 aaKnown RBP1.55□□□□□ -2.16
VPS13D-201ENST00000011700 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.53□□□□□ -2.16
VPS13D-201ENST00000011700 KRTAP4-9Q9BYQ8 210 aa1.53□□□□□ -2.16
VPS13D-201ENST00000011700 EPPK1P58107 5090 aaKnown RBP1.52□□□□□ -2.17
VPS13D-201ENST00000011700 RNF213Q63HN8 5207 aa1.52□□□□□ -2.17
VPS13D-201ENST00000011700 LOC100996750A0A140TA64 210 aa1.5□□□□□ -2.17
VPS13D-201ENST00000011700 UBR4Q5T4S7 5183 aa1.47□□□□□ -2.17
VPS13D-201ENST00000011700 KRTAP6-1Q3LI64 71 aa1.47□□□□□ -2.17
VPS13D-201ENST00000011700 FAT4Q6V0I7 4981 aa1.46□□□□□ -2.18
VPS13D-201ENST00000011700 HMCN2Q8NDA2 5059 aa1.44□□□□□ -2.18
VPS13D-201ENST00000011700 MUC2Q02817 5179 aa1.43□□□□□ -2.18
VPS13D-201ENST00000011700 KRTAP4-3Q9BYR4 195 aa1.41□□□□□ -2.18
VPS13D-201ENST00000011700 KRTAP9-6A8MVA2 160 aa1.41□□□□□ -2.18
VPS13D-201ENST00000011700 FSIP2Q5CZC0 6907 aa1.4□□□□□ -2.18
VPS13D-201ENST00000011700 KRTAP5-9P26371 169 aa1.4□□□□□ -2.18
VPS13D-201ENST00000011700 MUC19Q7Z5P9 8384 aa1.32□□□□□ -2.2
VPS13D-201ENST00000011700 KRTAP5-4Q6L8H1 288 aa1.29□□□□□ -2.2
VPS13D-201ENST00000011700 USH2AO75445 5202 aa1.28□□□□□ -2.2
VPS13D-201ENST00000011700 MDN1Q9NU22 5596 aa1.25□□□□□ -2.21
VPS13D-201ENST00000011700 KRTAP4-11Q9BYQ6 195 aa1.25□□□□□ -2.21
VPS13D-201ENST00000011700 KRTAP4-12Q9BQ66 201 aa1.24□□□□□ -2.21
VPS13D-201ENST00000011700 NEBP20929 6669 aa1.23□□□□□ -2.21
VPS13D-201ENST00000011700 KRTAP20-2Q3LI61 65 aa1.23□□□□□ -2.21
VPS13D-201ENST00000011700 MACF1Q9UPN3 7388 aaKnown RBP1.21□□□□□ -2.22
VPS13D-201ENST00000011700 FCGBPQ9Y6R7 5405 aaPredicted RBP1.2□□□□□ -2.22
VPS13D-201ENST00000011700 DSTQ03001 7570 aaKnown RBP1.2□□□□□ -2.22
VPS13D-201ENST00000011700 KMT2DO14686 5537 aa1.18□□□□□ -2.22
VPS13D-201ENST00000011700 SSPOA2VEC9 5147 aa1.17□□□□□ -2.22
VPS13D-201ENST00000011700 KRTAP5-5Q701N2 237 aaPredicted RBP1.15□□□□□ -2.23
VPS13D-201ENST00000011700 MUC5ACP98088 5654 aa1.14□□□□□ -2.23
VPS13D-201ENST00000011700 KRTAP5-3Q6L8H2 238 aa1.13□□□□□ -2.23
VPS13D-201ENST00000011700 MUC12Q9UKN1 5478 aa1.13□□□□□ -2.23
VPS13D-201ENST00000011700 GPR98Q8WXG9 6306 aa1.12□□□□□ -2.23
VPS13D-201ENST00000011700 KRTAP4-6Q9BYQ5 205 aa1.1□□□□□ -2.23
VPS13D-201ENST00000011700 KRTAP4-4Q9BYR3 166 aa1.07□□□□□ -2.24
VPS13D-201ENST00000011700 AHNAK2Q8IVF2 5795 aa1.07□□□□□ -2.24
VPS13D-201ENST00000011700 MUC5BQ9HC84 5762 aaPredicted RBP1.05□□□□□ -2.24
VPS13D-201ENST00000011700 HMCN1Q96RW7 5635 aa1.04□□□□□ -2.24
VPS13D-201ENST00000011700 PHGR1C9JFL3 82 aa0.99□□□□□ -2.25
VPS13D-201ENST00000011700 KRTAP5-10Q6L8G5 202 aa0.98□□□□□ -2.25
VPS13D-201ENST00000011700 KRTAP5-11Q6L8G4 156 aa0.96□□□□□ -2.26
VPS13D-201ENST00000011700 KRTAP4-2Q9BYR5 136 aa0.95□□□□□ -2.26
VPS13D-201ENST00000011700 KRTAP5-2Q701N4 177 aa0.95□□□□□ -2.26
VPS13D-201ENST00000011700 KRTAP5-8O75690 187 aa0.93□□□□□ -2.26
VPS13D-201ENST00000011700 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.91□□□□□ -2.26
VPS13D-201ENST00000011700 KRTAP21-1Q3LI58 79 aa0.89□□□□□ -2.27
VPS13D-201ENST00000011700 AHNAKQ09666 5890 aaKnown RBP0.88□□□□□ -2.27
VPS13D-201ENST00000011700 KRTAP5-7Q6L8G8 165 aa0.8□□□□□ -2.28
VPS13D-201ENST00000011700 KRTAP5-1Q6L8H4 278 aa0.8□□□□□ -2.28
VPS13D-201ENST00000011700 KRTAP21-2Q3LI59 83 aa0.79□□□□□ -2.28
VPS13D-201ENST00000011700 MUC16Q8WXI7 14507 aa0.71□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 93 ms