RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 P01724 129 aa12.32□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 P01727 129 aa12.32□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 PolP10400 120 aa12.32□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gm17324Q8C6J8 137 aa12.32□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 SNORCQ9CXL7 121 aa12.32□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Dpm2Q9Z324 84 aa12.32□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 F5O88783 2183 aa12.32□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gm20517G3UVU6 152 aa12.32□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Zc2hc1aQ8BJH1 324 aa12.32□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 MalO09198 153 aa12.31□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 NdpP48744 131 aa12.31□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Map6d1Q14BB9 191 aa12.31□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Il19Q8CJ70 176 aa12.31□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Tet1Q3URK3 2007 aaKnown RBP12.31□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Zfyve26Q5DU37 2529 aa12.31□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Dopey2Q3UHQ6 2295 aa12.31□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Igll1P20764 209 aa12.31□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 CtsgP28293 261 aa12.31□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Klf13Q9JJZ6 289 aa12.31□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Ighv1-80A0A075B5Y3 117 aa12.3□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gm7849D3YX03 116 aa12.3□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gm10521E9PZK0 135 aa12.3□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gkn1Q9CR36 201 aa12.3□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Flg2Q2VIS4 2362 aa12.3□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Plscr4P58196 326 aa12.3□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Rpl36aP83882 106 aaKnown RBP12.3□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Trav7d-3Q5R1I1 112 aa12.3□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Minos1Q7TNS2 76 aa12.3□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Ighv1-16A0A075B5U1 98 aa12.3□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Trav12d-3A0A075B6A4 115 aa12.3□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Wt1P22561 449 aa12.3□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gm5089A1L3C8 106 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Zfp248Q640N4 576 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Ifi27l2aQ8R412 90 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Pradc1Q9D9N8 188 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Trav6n-6A0A075B6B2 114 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Defa28D3Z1V9 94 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Defa26Q3L180 93 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Defa25Q5G864 92 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 RhohQ9D3G9 191 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Lrp4Q8VI56 1905 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Trav14-3A0A075B607 120 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Trav14n-2A0A0G2JDF5 121 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Zfp36l1P23950 338 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Tal2Q62282 108 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Sp5Q9JHX2 398 aa12.29□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Nxph4G3X9N5 304 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Klk1b4P00757 256 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 P01812 117 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Tln1P26039 2541 aaKnown RBP12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gm15128A2ADW8 449 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gm15080A2BI02 449 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gm15093A2BI72 449 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gm15217A2CG07 155 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Luzp4B1AV09 449 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gm15107B1B0X0 449 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gm15097E9QA14 449 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Sigmar1O55242 223 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Ang6Q5GAN0 147 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gm15085Q62012 449 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 ApomQ9Z1R3 190 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 P03985 172 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Pcnx2Q5DU28 2122 aa12.28□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gm29423A0A087WRM1 55 aa12.27□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Igkv4-71A0A0G2JEH0 117 aa12.27□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Ighv1-62-3P01754 117 aa12.27□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Tctex1d4Q8CDY7 219 aa12.27□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Gemin7Q9CWY4 129 aa12.27□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Ncor2Q9WU42 2472 aaKnown RBP12.27□□□□□ -0.44
Ccdc88b-201ENSMUST00000113440 Ly86O88188 162 aa12.27□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 P01728 117 aa12.27□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 5730522E02RikQ5SP45 163 aa12.27□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Atp6v0bQ91V37 205 aa12.27□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Gm33815A0A087WNV3 176 aa12.26□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 CckP09240 115 aa12.26□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Trav6-6A0A075B603 114 aa12.26□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Tomm6Q9CQN3 74 aa12.26□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Them7Q9DCP4 223 aa12.26□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Gm15127B1AVZ5 449 aa12.26□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Gm15091B1AZM2 449 aa12.26□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 KprpB2RUR4 657 aa12.26□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 P01793 123 aa12.26□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Prr3Q811B5 190 aaKnown RBP12.26□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Igkv20-101-2A0A0G2JDU3 113 aa12.25□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Gm10767Q3TQP0 103 aa12.25□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Ighv1-39A0A075B5V5 117 aa12.25□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Nsun4C4P6S0 806 aaKnown RBP12.25□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Gm9949Q8C9F4 104 aa12.25□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Ca1P13634 261 aa12.25□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Defa4P28311 92 aa12.25□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Tex26Q0VB26 296 aa12.25□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Defb26Q30KN7 186 aa12.24□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Ighv1-58A0A075B5W9 117 aa12.24□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Gm26558Q8BLW8 286 aa12.24□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Nav2E9Q842 2432 aa12.24□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Gm6040Q4QY32 63 aa12.24□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 P01659 112 aa12.23□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 P01811 117 aa12.23□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Cox6b1P56391 86 aaKnown RBP12.23□□□□□ -0.45
Ccdc88b-201ENSMUST00000113440 Tmem86bQ497J1 226 aa12.23□□□□□ -0.45
Retrieved 100 of 22,080 RNA–protein pairs in 82.6 ms