RNA–Protein interactions for RNA: ENST00000638009.1

CACNA1A-257, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CACNA1A, Length 8,665 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-257ENST00000638009 CMYA5Q8N3K9 4069 aa8.08□□□□□ -1.12
CACNA1A-257ENST00000638009 DNAH3Q8TD57 4116 aa7.94□□□□□ -1.14
CACNA1A-257ENST00000638009 KRTAP19-4Q3LI73 84 aa7.92□□□□□ -1.14
CACNA1A-257ENST00000638009 ZNF469Q96JG9 3925 aaPredicted RBP7.86□□□□□ -1.15
CACNA1A-257ENST00000638009 DNAH7Q8WXX0 4024 aa7.83□□□□□ -1.16
CACNA1A-257ENST00000638009 KRTAP10-7P60409 375 aaPredicted RBP7.8□□□□□ -1.16
CACNA1A-257ENST00000638009 MT1HL1P0DM35 61 aa7.79□□□□□ -1.16
CACNA1A-257ENST00000638009 KMT2AQ03164 3969 aa7.7□□□□□ -1.18
CACNA1A-257ENST00000638009 HECTD4Q9Y4D8 3996 aa7.65□□□□□ -1.19
CACNA1A-257ENST00000638009 ANK2Q01484 3957 aa7.62□□□□□ -1.19
CACNA1A-257ENST00000638009 DNAH2Q9P225 4427 aa7.59□□□□□ -1.2
CACNA1A-257ENST00000638009 DNAH1Q9P2D7 4330 aa7.53□□□□□ -1.2
CACNA1A-257ENST00000638009 LCE3CQ5T5A8 94 aa7.51□□□□□ -1.21
CACNA1A-257ENST00000638009 VPS13BQ7Z7G8 4022 aa7.49□□□□□ -1.21
CACNA1A-257ENST00000638009 DNAH6Q9C0G6 4158 aa7.48□□□□□ -1.21
CACNA1A-257ENST00000638009 LORP23490 312 aaPredicted RBP7.43□□□□□ -1.22
CACNA1A-257ENST00000638009 SPRR2GQ9BYE4 73 aa7.37□□□□□ -1.23
CACNA1A-257ENST00000638009 FLGP20930 4061 aaPredicted RBP7.37□□□□□ -1.23
CACNA1A-257ENST00000638009 FRAS1Q86XX4 4008 aa7.33□□□□□ -1.24
CACNA1A-257ENST00000638009 HUWE1Q7Z6Z7 4374 aaKnown RBP7.32□□□□□ -1.24
CACNA1A-257ENST00000638009 SPRR2FQ96RM1 72 aa7.29□□□□□ -1.24
CACNA1A-257ENST00000638009 KRTAP10-4P60372 401 aaPredicted RBP7.29□□□□□ -1.24
CACNA1A-257ENST00000638009 KRTAP19-5Q3LI72 72 aa7.23□□□□□ -1.25
CACNA1A-257ENST00000638009 MT3P25713 68 aa7.21□□□□□ -1.25
CACNA1A-257ENST00000638009 KRTAP12-4P60329 112 aa7.07□□□□□ -1.28
CACNA1A-257ENST00000638009 LCE3BQ5TA77 95 aa6.99□□□□□ -1.29
CACNA1A-257ENST00000638009 KRTAP4-5Q9BYR2 181 aa6.99□□□□□ -1.29
CACNA1A-257ENST00000638009 MT1HP80294 61 aa6.97□□□□□ -1.29
CACNA1A-257ENST00000638009 ANK3Q12955 4377 aaKnown RBP6.95□□□□□ -1.3
CACNA1A-257ENST00000638009 MT2AP02795 61 aa6.87□□□□□ -1.31
CACNA1A-257ENST00000638009 PRKDCP78527 4128 aaKnown RBP6.86□□□□□ -1.31
CACNA1A-257ENST00000638009 LCE3DQ9BYE3 92 aa6.83□□□□□ -1.32
CACNA1A-257ENST00000638009 SPRR2EP22531 72 aa6.81□□□□□ -1.32
CACNA1A-257ENST00000638009 SPRR2BP35325 72 aa6.81□□□□□ -1.32
CACNA1A-257ENST00000638009 SPRR2AP35326 72 aa6.81□□□□□ -1.32
CACNA1A-257ENST00000638009 LCE2BO14633 110 aa6.77□□□□□ -1.33
CACNA1A-257ENST00000638009 LCE3EQ5T5B0 92 aa6.72□□□□□ -1.33
CACNA1A-257ENST00000638009 SPRR2DP22532 72 aa6.66□□□□□ -1.34
CACNA1A-257ENST00000638009 MT1FP04733 61 aa6.62□□□□□ -1.35
CACNA1A-257ENST00000638009 FAT2Q9NYQ8 4349 aa6.61□□□□□ -1.35
CACNA1A-257ENST00000638009 DNAH10Q8IVF4 4471 aa6.57□□□□□ -1.36
CACNA1A-257ENST00000638009 KRTAP4-1Q9BYQ7 146 aa6.54□□□□□ -1.36
CACNA1A-257ENST00000638009 MT1GP13640 62 aa6.53□□□□□ -1.36
CACNA1A-257ENST00000638009 SPRR5A0A1B0GTR4 108 aa6.51□□□□□ -1.37
CACNA1A-257ENST00000638009 KRTAP19-8Q3LI54 63 aa6.49□□□□□ -1.37
CACNA1A-257ENST00000638009 VPS13DQ5THJ4 4388 aa6.45□□□□□ -1.38
CACNA1A-257ENST00000638009 DNAH8Q96JB1 4490 aa6.45□□□□□ -1.38
CACNA1A-257ENST00000638009 DNAH17Q9UFH2 4485 aa6.43□□□□□ -1.38
CACNA1A-257ENST00000638009 DYNC2H1Q8NCM8 4307 aaKnown RBP6.37□□□□□ -1.39
CACNA1A-257ENST00000638009 LCE2CQ5TA81 110 aa6.34□□□□□ -1.39
CACNA1A-257ENST00000638009 PKHD1P08F94 4074 aa6.34□□□□□ -1.39
CACNA1A-257ENST00000638009 PKHD1L1Q86WI1 4243 aa6.33□□□□□ -1.4
CACNA1A-257ENST00000638009 MT1XP80297 61 aa6.31□□□□□ -1.4
CACNA1A-257ENST00000638009 DNAH11Q96DT5 4516 aa6.29□□□□□ -1.4
CACNA1A-257ENST00000638009 MT1LQ93083 61 aa6.29□□□□□ -1.4
CACNA1A-257ENST00000638009 LRP1Q07954 4544 aaKnown RBP6.24□□□□□ -1.41
CACNA1A-257ENST00000638009 KRTAP19-1Q8IUB9 90 aa6.23□□□□□ -1.41
CACNA1A-257ENST00000638009 DNAH9Q9NYC9 4486 aa6.22□□□□□ -1.41
CACNA1A-257ENST00000638009 PRM1P04553 51 aa6.17□□□□□ -1.42
CACNA1A-257ENST00000638009 LCE2DQ5TA82 110 aaPredicted RBP6.13□□□□□ -1.43
CACNA1A-257ENST00000638009 KRTAP19-3Q7Z4W3 81 aa6.12□□□□□ -1.43
CACNA1A-257ENST00000638009 MT1EP04732 61 aa5.89□□□□□ -1.47
CACNA1A-257ENST00000638009 STARD9Q9P2P6 4700 aa5.88□□□□□ -1.47
CACNA1A-257ENST00000638009 MT1BP07438 61 aa5.87□□□□□ -1.47
CACNA1A-257ENST00000638009 HSPG2P98160 4391 aa5.85□□□□□ -1.47
CACNA1A-257ENST00000638009 LCE1DQ5T752 114 aa5.85□□□□□ -1.47
CACNA1A-257ENST00000638009 APOBP04114 4563 aaKnown RBP5.84□□□□□ -1.47
CACNA1A-257ENST00000638009 LCE1BQ5T7P3 118 aa5.84□□□□□ -1.47
CACNA1A-257ENST00000638009 DNAH5Q8TE73 4624 aa5.83□□□□□ -1.48
CACNA1A-257ENST00000638009 KRTAP4-8A0A0G2JLE6 195 aa5.81□□□□□ -1.48
CACNA1A-257ENST00000638009 KRTAP4-8Q9BYQ9 185 aa5.81□□□□□ -1.48
CACNA1A-257ENST00000638009 PKD1P98161 4303 aa5.81□□□□□ -1.48
CACNA1A-257ENST00000638009 KRTAP9-8Q9BYQ0 159 aa5.8□□□□□ -1.48
CACNA1A-257ENST00000638009 MT4P47944 62 aa5.76□□□□□ -1.49
CACNA1A-257ENST00000638009 TNXBP22105 4242 aa5.74□□□□□ -1.49
CACNA1A-257ENST00000638009 MT1MQ8N339 61 aa5.72□□□□□ -1.49
CACNA1A-257ENST00000638009 KRTAP9-3Q9BYQ3 159 aa5.68□□□□□ -1.5
CACNA1A-257ENST00000638009 PLECQ15149 4684 aaKnown RBP5.68□□□□□ -1.5
CACNA1A-257ENST00000638009 SACSQ9NZJ4 4579 aa5.66□□□□□ -1.5
CACNA1A-257ENST00000638009 FAT1Q14517 4588 aa5.66□□□□□ -1.5
CACNA1A-257ENST00000638009 DYNC1H1Q14204 4646 aaKnown RBP5.63□□□□□ -1.51
CACNA1A-257ENST00000638009 LRP1BQ9NZR2 4599 aa5.58□□□□□ -1.52
CACNA1A-257ENST00000638009 MT1AP04731 61 aa5.53□□□□□ -1.52
CACNA1A-257ENST00000638009 LCE5AQ5TCM9 118 aa5.51□□□□□ -1.53
CACNA1A-257ENST00000638009 KRTAP2-3P0C7H8 128 aa5.46□□□□□ -1.54
CACNA1A-257ENST00000638009 KRTAP2-4Q9BYR9 128 aa5.46□□□□□ -1.54
CACNA1A-257ENST00000638009 KRTAP2-1Q9BYU5 128 aa5.46□□□□□ -1.54
CACNA1A-257ENST00000638009 KRTAP4-7Q9BYR0 210 aa5.43□□□□□ -1.54
CACNA1A-257ENST00000638009 FAT3Q8TDW7 4589 aa5.37□□□□□ -1.55
CACNA1A-257ENST00000638009 LOC100996750A0A140TA64 210 aa5.3□□□□□ -1.56
CACNA1A-257ENST00000638009 KRTAP19-6Q3LI70 58 aa5.29□□□□□ -1.56
CACNA1A-257ENST00000638009 MYCBP2O75592 4640 aa5.28□□□□□ -1.56
CACNA1A-257ENST00000638009 LCE1CQ5T751 118 aa5.27□□□□□ -1.57
CACNA1A-257ENST00000638009 LCE1EQ5T753 118 aa5.27□□□□□ -1.57
CACNA1A-257ENST00000638009 LCE1FQ5T754 118 aa5.27□□□□□ -1.57
CACNA1A-257ENST00000638009 LCE1AQ5T7P2 110 aa5.27□□□□□ -1.57
CACNA1A-257ENST00000638009 KRTAP6-2Q3LI66 62 aa5.22□□□□□ -1.57
CACNA1A-257ENST00000638009 MUC17Q685J3 4493 aa5.18□□□□□ -1.58
CACNA1A-257ENST00000638009 RYR1P21817 5038 aa5.07□□□□□ -1.6
CACNA1A-257ENST00000638009 LCE4AQ5TA78 99 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms