RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 ACYP2P14621 99 aa10.13□□□□□ -0.79
CLN3-250ENST00000636839 COA5Q86WW8 74 aa10.13□□□□□ -0.79
CLN3-250ENST00000636839 PMAIP1Q13794 54 aa10.12□□□□□ -0.79
CLN3-250ENST00000636839 RBM12B-AS1Q9P1G2 102 aa10.08□□□□□ -0.8
CLN3-250ENST00000636839 A8MUN3 132 aa10.07□□□□□ -0.8
CLN3-250ENST00000636839 KRTAP19-2Q3LHN2 52 aa10.04□□□□□ -0.8
CLN3-250ENST00000636839 H1FX-AS1Q4G0G2 97 aa9.99□□□□□ -0.81
CLN3-250ENST00000636839 CHKB-CPT1BH3BT56 60 aa9.98□□□□□ -0.81
CLN3-250ENST00000636839 PSPHP1O15172 72 aa9.96□□□□□ -0.81
CLN3-250ENST00000636839 LCA10Q71F78 164 aa9.94□□□□□ -0.82
CLN3-250ENST00000636839 KRTAP3-3Q9BYR6 98 aa9.91□□□□□ -0.82
CLN3-250ENST00000636839 Q5VV11 94 aa9.9□□□□□ -0.82
CLN3-250ENST00000636839 S4R3F8 94 aa9.9□□□□□ -0.82
CLN3-250ENST00000636839 FAT4Q6V0I7 4981 aa9.88□□□□□ -0.83
CLN3-250ENST00000636839 LCE2CQ5TA81 110 aa9.87□□□□□ -0.83
CLN3-250ENST00000636839 KTN1-AS1Q86SY8 53 aa9.81□□□□□ -0.84
CLN3-250ENST00000636839 FLGP20930 4061 aaPredicted RBP9.78□□□□□ -0.84
CLN3-250ENST00000636839 PRR15LQ9BU68 103 aa9.77□□□□□ -0.85
CLN3-250ENST00000636839 SPTSSBQ8NFR3 76 aa9.71□□□□□ -0.86
CLN3-250ENST00000636839 CDC42SE1Q9NRR8 79 aa9.71□□□□□ -0.86
CLN3-250ENST00000636839 A6NED7 52 aa9.69□□□□□ -0.86
CLN3-250ENST00000636839 LINC01558Q9Y6Z2 57 aa9.68□□□□□ -0.86
CLN3-250ENST00000636839 CSAG1Q6PB30 78 aa9.67□□□□□ -0.86
CLN3-250ENST00000636839 A6NN06 94 aa9.65□□□□□ -0.86
CLN3-250ENST00000636839 MT1HP80294 61 aa9.65□□□□□ -0.87
CLN3-250ENST00000636839 A8MU10 97 aa9.63□□□□□ -0.87
CLN3-250ENST00000636839 A0A1B0GU69 56 aa9.55□□□□□ -0.88
CLN3-250ENST00000636839 M0R2T5 61 aa9.53□□□□□ -0.88
CLN3-250ENST00000636839 KRTAP3-2Q9BYR7 98 aa9.53□□□□□ -0.88
CLN3-250ENST00000636839 ADM2Q7Z4H4 148 aa9.5□□□□□ -0.89
CLN3-250ENST00000636839 KRTAP10-6P60371 365 aaPredicted RBP9.49□□□□□ -0.89
CLN3-250ENST00000636839 P0C880 135 aa9.48□□□□□ -0.89
CLN3-250ENST00000636839 H0YAA0 97 aa9.39□□□□□ -0.91
CLN3-250ENST00000636839 LORP23490 312 aaPredicted RBP9.34□□□□□ -0.91
CLN3-250ENST00000636839 LCE2AQ5TA79 106 aaPredicted RBP9.33□□□□□ -0.92
CLN3-250ENST00000636839 A0A1B0GU33 70 aa9.31□□□□□ -0.92
CLN3-250ENST00000636839 KRTAP9-8Q9BYQ0 159 aa9.29□□□□□ -0.92
CLN3-250ENST00000636839 KRTAP13-4Q3LI77 160 aa9.27□□□□□ -0.93
CLN3-250ENST00000636839 SPATA8Q6RVD6 105 aa9.26□□□□□ -0.93
CLN3-250ENST00000636839 MT2AP02795 61 aa9.24□□□□□ -0.93
CLN3-250ENST00000636839 MT1FP04733 61 aa9.21□□□□□ -0.93
CLN3-250ENST00000636839 UQCR11O14957 56 aa9.21□□□□□ -0.94
CLN3-250ENST00000636839 KRTAP10-10P60014 251 aa9.15□□□□□ -0.94
CLN3-250ENST00000636839 M0QZ58 72 aa9.13□□□□□ -0.95
CLN3-250ENST00000636839 MIR22HGQ0VDD5 57 aa9.13□□□□□ -0.95
CLN3-250ENST00000636839 LINC01554Q52M75 96 aa9.12□□□□□ -0.95
CLN3-250ENST00000636839 R4GN34 69 aa9.12□□□□□ -0.95
CLN3-250ENST00000636839 A0A0D9SG42 100 aa9.07□□□□□ -0.96
CLN3-250ENST00000636839 PRAC1Q96KF2 57 aa9.06□□□□□ -0.96
CLN3-250ENST00000636839 KRTAP19-1Q8IUB9 90 aa9□□□□□ -0.97
CLN3-250ENST00000636839 CRIPTQ9P021 101 aa8.98□□□□□ -0.97
CLN3-250ENST00000636839 KRTAP9-3Q9BYQ3 159 aa8.95□□□□□ -0.98
CLN3-250ENST00000636839 SPRR2GQ9BYE4 73 aa8.93□□□□□ -0.98
CLN3-250ENST00000636839 KRTAP12-2P59991 146 aa8.85□□□□□ -0.99
CLN3-250ENST00000636839 KRTAP12-1P59990 96 aa8.84□□□□□ -0.99
CLN3-250ENST00000636839 SPINT4Q6UDR6 99 aa8.83□□□□□ -1
CLN3-250ENST00000636839 H3BS24 57 aa8.76□□□□□ -1.01
CLN3-250ENST00000636839 LCE2BO14633 110 aa8.76□□□□□ -1.01
CLN3-250ENST00000636839 KRTAP19-8Q3LI54 63 aa8.71□□□□□ -1.02
CLN3-250ENST00000636839 MT1BP07438 61 aa8.68□□□□□ -1.02
CLN3-250ENST00000636839 KRTAP25-1Q3LHN0 102 aa8.65□□□□□ -1.02
CLN3-250ENST00000636839 K7ERS5 55 aa8.63□□□□□ -1.03
CLN3-250ENST00000636839 USH2AO75445 5202 aa8.63□□□□□ -1.03
CLN3-250ENST00000636839 PLAC4Q8WY50 150 aa8.59□□□□□ -1.03
CLN3-250ENST00000636839 ROMO1P60602 79 aa8.53□□□□□ -1.04
CLN3-250ENST00000636839 CAMK2N1Q7Z7J9 78 aa8.53□□□□□ -1.04
CLN3-250ENST00000636839 FSIP2Q5CZC0 6907 aa8.49□□□□□ -1.05
CLN3-250ENST00000636839 LCE2DQ5TA82 110 aaPredicted RBP8.44□□□□□ -1.06
CLN3-250ENST00000636839 C10orf95Q9H7T3 257 aa8.41□□□□□ -1.06
CLN3-250ENST00000636839 MT1XP80297 61 aa8.37□□□□□ -1.07
CLN3-250ENST00000636839 SSPOA2VEC9 5147 aa8.37□□□□□ -1.07
CLN3-250ENST00000636839 KRTAP10-5P60370 271 aa8.36□□□□□ -1.07
CLN3-250ENST00000636839 KRTAP9-2Q9BYQ4 174 aa8.27□□□□□ -1.09
CLN3-250ENST00000636839 PRO2289Q9P1D8 64 aa8.15□□□□□ -1.1
CLN3-250ENST00000636839 KRTAP19-6Q3LI70 58 aa8.15□□□□□ -1.11
CLN3-250ENST00000636839 KRTAP10-7P60409 375 aaPredicted RBP8.07□□□□□ -1.12
CLN3-250ENST00000636839 TNP1P09430 55 aa8.06□□□□□ -1.12
CLN3-250ENST00000636839 FCGBPQ9Y6R7 5405 aaPredicted RBP8.02□□□□□ -1.13
CLN3-250ENST00000636839 KRTAP15-1Q3LI76 137 aa7.96□□□□□ -1.13
CLN3-250ENST00000636839 KMT2DO14686 5537 aa7.93□□□□□ -1.14
CLN3-250ENST00000636839 CRCT1Q9UGL9 99 aa7.93□□□□□ -1.14
CLN3-250ENST00000636839 KRTAP10-12P60413 245 aa7.88□□□□□ -1.15
CLN3-250ENST00000636839 LCE3AQ5TA76 89 aa7.84□□□□□ -1.15
CLN3-250ENST00000636839 KRTAP4-8A0A0G2JLE6 195 aa7.83□□□□□ -1.16
CLN3-250ENST00000636839 NDUFAF8A1L188 74 aa7.83□□□□□ -1.16
CLN3-250ENST00000636839 KRTAP4-8Q9BYQ9 185 aa7.83□□□□□ -1.16
CLN3-250ENST00000636839 KRTAP23-1A1A580 65 aa7.68□□□□□ -1.18
CLN3-250ENST00000636839 PP632Q6XCG6 107 aa7.68□□□□□ -1.18
CLN3-250ENST00000636839 MACF1Q9UPN3 7388 aaKnown RBP7.65□□□□□ -1.19
CLN3-250ENST00000636839 KRTAP9-6A0A140TA67 174 aa7.62□□□□□ -1.19
CLN3-250ENST00000636839 KRTAP8-1Q8IUC2 63 aa7.6□□□□□ -1.19
CLN3-250ENST00000636839 KRTAP19-5Q3LI72 72 aa7.56□□□□□ -1.2
CLN3-250ENST00000636839 SYNE2Q8WXH0 6885 aaKnown RBP7.5□□□□□ -1.21
CLN3-250ENST00000636839 KRTAP12-3P60328 96 aa7.49□□□□□ -1.21
CLN3-250ENST00000636839 KRTAP19-7Q3SYF9 63 aa7.48□□□□□ -1.21
CLN3-250ENST00000636839 A0A0A0MQY5 61 aa7.38□□□□□ -1.23
CLN3-250ENST00000636839 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.35□□□□□ -1.23
CLN3-250ENST00000636839 MUC12Q9UKN1 5478 aa7.34□□□□□ -1.24
CLN3-250ENST00000636839 MT1EP04732 61 aa7.33□□□□□ -1.24
CLN3-250ENST00000636839 LUZP6Q538Z0 58 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms