RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-223ENST00000629179 CYP4F30PQ9H0H9 118 aa6.63□□□□□ -1.35
PNKP-223ENST00000629179 TRAV22A0A0B4J277 110 aa6.62□□□□□ -1.35
PNKP-223ENST00000629179 KLKP1Q107X0 134 aa6.62□□□□□ -1.35
PNKP-223ENST00000629179 S4R3F8 94 aa6.62□□□□□ -1.35
PNKP-223ENST00000629179 LCA10Q71F78 164 aa6.59□□□□□ -1.35
PNKP-223ENST00000629179 C20orf197Q8N268 126 aa6.59□□□□□ -1.35
PNKP-223ENST00000629179 LOC101927531A0A1B0GV80 90 aa6.58□□□□□ -1.36
PNKP-223ENST00000629179 RPS28P62857 69 aaKnown RBP6.58□□□□□ -1.36
PNKP-223ENST00000629179 OCR1Q9BZK8 76 aa6.58□□□□□ -1.36
PNKP-223ENST00000629179 CSAG1Q6PB30 78 aa6.57□□□□□ -1.36
PNKP-223ENST00000629179 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.56□□□□□ -1.36
PNKP-223ENST00000629179 ATP5EP56381 51 aaPredicted RBP6.56□□□□□ -1.36
PNKP-223ENST00000629179 H0Y9P7 68 aa6.54□□□□□ -1.36
PNKP-223ENST00000629179 FCGBPQ9Y6R7 5405 aaPredicted RBP6.52□□□□□ -1.37
PNKP-223ENST00000629179 H3BPC8 53 aa6.52□□□□□ -1.37
PNKP-223ENST00000629179 KRTAP19-6Q3LI70 58 aa6.52□□□□□ -1.37
PNKP-223ENST00000629179 KRTAP3-3Q9BYR6 98 aa6.51□□□□□ -1.37
PNKP-223ENST00000629179 MP68P56378 58 aa6.5□□□□□ -1.37
PNKP-223ENST00000629179 H7BZZ5 65 aa6.49□□□□□ -1.37
PNKP-223ENST00000629179 KRTAP9-7A8MTY7 169 aa6.46□□□□□ -1.38
PNKP-223ENST00000629179 SNURFQ9Y675 71 aa6.46□□□□□ -1.38
PNKP-223ENST00000629179 LINC00208Q96KT6 92 aa6.45□□□□□ -1.38
PNKP-223ENST00000629179 SERP1Q9Y6X1 66 aa6.45□□□□□ -1.38
PNKP-223ENST00000629179 CYSTM1Q9H1C7 97 aa6.44□□□□□ -1.38
PNKP-223ENST00000629179 SPRR2GQ9BYE4 73 aa6.38□□□□□ -1.39
PNKP-223ENST00000629179 MT1BP07438 61 aa6.36□□□□□ -1.39
PNKP-223ENST00000629179 A8MUN3 132 aa6.35□□□□□ -1.39
PNKP-223ENST00000629179 KRTAP19-8Q3LI54 63 aa6.35□□□□□ -1.39
PNKP-223ENST00000629179 Q5VV11 94 aa6.34□□□□□ -1.39
PNKP-223ENST00000629179 SPANXA2-OT1Q8N9U9 137 aa6.34□□□□□ -1.39
PNKP-223ENST00000629179 SMIM26A0A096LP01 95 aa6.33□□□□□ -1.4
PNKP-223ENST00000629179 CRIPTQ9P021 101 aa6.28□□□□□ -1.4
PNKP-223ENST00000629179 MACF1Q9UPN3 7388 aaKnown RBP6.28□□□□□ -1.4
PNKP-223ENST00000629179 H0YAA0 97 aa6.27□□□□□ -1.41
PNKP-223ENST00000629179 A6NN06 94 aa6.25□□□□□ -1.41
PNKP-223ENST00000629179 ADM2Q7Z4H4 148 aa6.25□□□□□ -1.41
PNKP-223ENST00000629179 DMAC1Q96GE9 116 aa6.22□□□□□ -1.41
PNKP-223ENST00000629179 V9GYY9 64 aa6.2□□□□□ -1.42
PNKP-223ENST00000629179 SYNE2Q8WXH0 6885 aaKnown RBP6.2□□□□□ -1.42
PNKP-223ENST00000629179 KRTAP10-5P60370 271 aa6.18□□□□□ -1.42
PNKP-223ENST00000629179 KRTAP6-3Q3LI67 103 aa6.15□□□□□ -1.42
PNKP-223ENST00000629179 P0C880 135 aa6.13□□□□□ -1.43
PNKP-223ENST00000629179 Q1T7F1 81 aa6.13□□□□□ -1.43
PNKP-223ENST00000629179 ACYP2P14621 99 aa6.09□□□□□ -1.43
PNKP-223ENST00000629179 KRTAP3-2Q9BYR7 98 aa6.08□□□□□ -1.44
PNKP-223ENST00000629179 COA5Q86WW8 74 aa6.07□□□□□ -1.44
PNKP-223ENST00000629179 R4GN34 69 aa6.07□□□□□ -1.44
PNKP-223ENST00000629179 M0QZ58 72 aa6.04□□□□□ -1.44
PNKP-223ENST00000629179 PLAC4Q8WY50 150 aa6.01□□□□□ -1.45
PNKP-223ENST00000629179 SVIPQ8NHG7 77 aa6□□□□□ -1.45
PNKP-223ENST00000629179 SPTSSBQ8NFR3 76 aa5.98□□□□□ -1.45
PNKP-223ENST00000629179 CHKB-CPT1BH3BT56 60 aa5.97□□□□□ -1.45
PNKP-223ENST00000629179 MT1XP80297 61 aa5.97□□□□□ -1.45
PNKP-223ENST00000629179 LINC01554Q52M75 96 aa5.96□□□□□ -1.46
PNKP-223ENST00000629179 LINC01558Q9Y6Z2 57 aa5.96□□□□□ -1.46
PNKP-223ENST00000629179 PRO2289Q9P1D8 64 aa5.95□□□□□ -1.46
PNKP-223ENST00000629179 PRO0628Q9UI54 55 aa5.95□□□□□ -1.46
PNKP-223ENST00000629179 PRR15LQ9BU68 103 aa5.91□□□□□ -1.46
PNKP-223ENST00000629179 PSPHP1O15172 72 aa5.89□□□□□ -1.47
PNKP-223ENST00000629179 KRTAP5-9P26371 169 aa5.89□□□□□ -1.47
PNKP-223ENST00000629179 BRK1Q8WUW1 75 aa5.87□□□□□ -1.47
PNKP-223ENST00000629179 NEBP20929 6669 aa5.82□□□□□ -1.48
PNKP-223ENST00000629179 A0A1B0GU69 56 aa5.79□□□□□ -1.48
PNKP-223ENST00000629179 A6NED7 52 aa5.79□□□□□ -1.48
PNKP-223ENST00000629179 KRTAP12-2P59991 146 aa5.78□□□□□ -1.48
PNKP-223ENST00000629179 SEC61GP60059 68 aa5.78□□□□□ -1.48
PNKP-223ENST00000629179 MUC12Q9UKN1 5478 aa5.78□□□□□ -1.48
PNKP-223ENST00000629179 CDC42SE1Q9NRR8 79 aa5.76□□□□□ -1.49
PNKP-223ENST00000629179 KRTAP13-4Q3LI77 160 aa5.75□□□□□ -1.49
PNKP-223ENST00000629179 SPRR2FQ96RM1 72 aa5.75□□□□□ -1.49
PNKP-223ENST00000629179 KMT2DO14686 5537 aa5.75□□□□□ -1.49
PNKP-223ENST00000629179 KRTAP8-1Q8IUC2 63 aa5.74□□□□□ -1.49
PNKP-223ENST00000629179 KRTAP4-8A0A0G2JLE6 195 aa5.71□□□□□ -1.5
PNKP-223ENST00000629179 KRTAP10-7P60409 375 aaPredicted RBP5.71□□□□□ -1.5
PNKP-223ENST00000629179 KRTAP4-8Q9BYQ9 185 aa5.71□□□□□ -1.5
PNKP-223ENST00000629179 UQCR11O14957 56 aa5.7□□□□□ -1.5
PNKP-223ENST00000629179 KRTAP20-1Q3LI63 56 aa5.67□□□□□ -1.5
PNKP-223ENST00000629179 KRTAP10-12P60413 245 aa5.66□□□□□ -1.5
PNKP-223ENST00000629179 SPRR2EP22531 72 aa5.65□□□□□ -1.5
PNKP-223ENST00000629179 SPRR2BP35325 72 aa5.65□□□□□ -1.5
PNKP-223ENST00000629179 SPRR2AP35326 72 aa5.65□□□□□ -1.5
PNKP-223ENST00000629179 SPATA8Q6RVD6 105 aa5.64□□□□□ -1.51
PNKP-223ENST00000629179 MDN1Q9NU22 5596 aa5.62□□□□□ -1.51
PNKP-223ENST00000629179 MIR22HGQ0VDD5 57 aa5.61□□□□□ -1.51
PNKP-223ENST00000629179 PMAIP1Q13794 54 aa5.61□□□□□ -1.51
PNKP-223ENST00000629179 CAMK2N1Q7Z7J9 78 aa5.59□□□□□ -1.51
PNKP-223ENST00000629179 A0A0D9SG42 100 aa5.58□□□□□ -1.52
PNKP-223ENST00000629179 LCE1AQ5T7P2 110 aa5.58□□□□□ -1.52
PNKP-223ENST00000629179 A0A1B0GU33 70 aa5.56□□□□□ -1.52
PNKP-223ENST00000629179 KRTAP2-3P0C7H8 128 aa5.54□□□□□ -1.52
PNKP-223ENST00000629179 KRTAP2-4Q9BYR9 128 aa5.54□□□□□ -1.52
PNKP-223ENST00000629179 A8MU10 97 aa5.49□□□□□ -1.53
PNKP-223ENST00000629179 SPINT4Q6UDR6 99 aa5.49□□□□□ -1.53
PNKP-223ENST00000629179 SPRR2DP22532 72 aa5.46□□□□□ -1.54
PNKP-223ENST00000629179 KRTAP12-1P59990 96 aa5.46□□□□□ -1.54
PNKP-223ENST00000629179 KTN1-AS1Q86SY8 53 aa5.46□□□□□ -1.54
PNKP-223ENST00000629179 K7ERS5 55 aa5.45□□□□□ -1.54
PNKP-223ENST00000629179 KRTAP2-2Q9BYT5 123 aa5.37□□□□□ -1.55
PNKP-223ENST00000629179 KRTAP2-1Q9BYU5 128 aa5.37□□□□□ -1.55
PNKP-223ENST00000629179 KRTAP19-7Q3SYF9 63 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms