RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 CRIPTQ9P021 101 aa6.27□□□□□ -1.41
PNKP-218ENST00000625299 LCE1AQ5T7P2 110 aa6.26□□□□□ -1.41
PNKP-218ENST00000625299 KRTAP8-1Q8IUC2 63 aa6.26□□□□□ -1.41
PNKP-218ENST00000625299 A0A1B0GV90 55 aa6.24□□□□□ -1.41
PNKP-218ENST00000625299 SPRR2DP22532 72 aa6.24□□□□□ -1.41
PNKP-218ENST00000625299 KRTAP3-3Q9BYR6 98 aa6.23□□□□□ -1.41
PNKP-218ENST00000625299 K7EP34 96 aa6.22□□□□□ -1.41
PNKP-218ENST00000625299 GTF2H5Q6ZYL4 71 aa6.22□□□□□ -1.41
PNKP-218ENST00000625299 PRO2289Q9P1D8 64 aa6.21□□□□□ -1.42
PNKP-218ENST00000625299 SPCS1Q9Y6A9 102 aa6.2□□□□□ -1.42
PNKP-218ENST00000625299 MT1XP80297 61 aa6.16□□□□□ -1.42
PNKP-218ENST00000625299 F8W1H4 67 aa6.15□□□□□ -1.42
PNKP-218ENST00000625299 A0A087WVE0 104 aa6.14□□□□□ -1.43
PNKP-218ENST00000625299 PRO0461Q9UI25 63 aa6.14□□□□□ -1.43
PNKP-218ENST00000625299 H3BT86 120 aa6.12□□□□□ -1.43
PNKP-218ENST00000625299 A8MUN3 132 aa6.1□□□□□ -1.43
PNKP-218ENST00000625299 GPR98Q8WXG9 6306 aa6.1□□□□□ -1.43
PNKP-218ENST00000625299 LCE3BQ5TA77 95 aa6.09□□□□□ -1.43
PNKP-218ENST00000625299 PLAC4Q8WY50 150 aa6.08□□□□□ -1.44
PNKP-218ENST00000625299 KRTAP4-8A0A0G2JLE6 195 aa6.07□□□□□ -1.44
PNKP-218ENST00000625299 KRTAP4-8Q9BYQ9 185 aa6.07□□□□□ -1.44
PNKP-218ENST00000625299 KRTAP12-2P59991 146 aa6.06□□□□□ -1.44
PNKP-218ENST00000625299 TP53AIP1Q9HCN2 124 aa6.05□□□□□ -1.44
PNKP-218ENST00000625299 H0YAA0 97 aa6.03□□□□□ -1.44
PNKP-218ENST00000625299 ADM2Q7Z4H4 148 aa6.03□□□□□ -1.44
PNKP-218ENST00000625299 NDUFC1O43677 76 aa6.02□□□□□ -1.45
PNKP-218ENST00000625299 CYP4F30PQ9H0H9 118 aa6.02□□□□□ -1.45
PNKP-218ENST00000625299 ETDBQ3ZM63 59 aa6.01□□□□□ -1.45
PNKP-218ENST00000625299 UBL5Q9BZL1 73 aa6.01□□□□□ -1.45
PNKP-218ENST00000625299 J3QR89 54 aa5.95□□□□□ -1.46
PNKP-218ENST00000625299 FAM240AA0A1B0GVK7 77 aa5.93□□□□□ -1.46
PNKP-218ENST00000625299 K7ERU9 68 aa5.93□□□□□ -1.46
PNKP-218ENST00000625299 LOC101927531A0A1B0GV80 90 aa5.91□□□□□ -1.46
PNKP-218ENST00000625299 ACYP1P07311 99 aa5.91□□□□□ -1.46
PNKP-218ENST00000625299 R4GN34 69 aa5.91□□□□□ -1.46
PNKP-218ENST00000625299 TRAV22A0A0B4J277 110 aa5.89□□□□□ -1.47
PNKP-218ENST00000625299 KRTAP10-7P60409 375 aaPredicted RBP5.89□□□□□ -1.47
PNKP-218ENST00000625299 DSTQ03001 7570 aaKnown RBP5.86□□□□□ -1.47
PNKP-218ENST00000625299 M0QZ58 72 aa5.86□□□□□ -1.47
PNKP-218ENST00000625299 LINC01554Q52M75 96 aa5.84□□□□□ -1.47
PNKP-218ENST00000625299 KRTAP10-12P60413 245 aa5.83□□□□□ -1.48
PNKP-218ENST00000625299 P0C880 135 aa5.82□□□□□ -1.48
PNKP-218ENST00000625299 KRTAP4-9Q9BYQ8 210 aa5.81□□□□□ -1.48
PNKP-218ENST00000625299 C20orf197Q8N268 126 aa5.78□□□□□ -1.48
PNKP-218ENST00000625299 LINC00643Q86TS7 51 aa5.77□□□□□ -1.49
PNKP-218ENST00000625299 H0Y9P7 68 aa5.76□□□□□ -1.49
PNKP-218ENST00000625299 ATP5EP2Q5VTU8 51 aa5.74□□□□□ -1.49
PNKP-218ENST00000625299 ATOX1O00244 68 aa5.72□□□□□ -1.49
PNKP-218ENST00000625299 UQCRQO14949 82 aa5.7□□□□□ -1.5
PNKP-218ENST00000625299 MT-ATP8P03928 68 aa5.65□□□□□ -1.5
PNKP-218ENST00000625299 KRTAP3-2Q9BYR7 98 aa5.64□□□□□ -1.51
PNKP-218ENST00000625299 LINC00208Q96KT6 92 aa5.62□□□□□ -1.51
PNKP-218ENST00000625299 SCGB1A1P11684 91 aa5.61□□□□□ -1.51
PNKP-218ENST00000625299 HIST1H4AP62805 103 aaKnown RBP5.61□□□□□ -1.51
PNKP-218ENST00000625299 LCE1DQ5T752 114 aa5.59□□□□□ -1.51
PNKP-218ENST00000625299 LCE5AQ5TCM9 118 aa5.59□□□□□ -1.51
PNKP-218ENST00000625299 HMCN1Q96RW7 5635 aa5.55□□□□□ -1.52
PNKP-218ENST00000625299 KRTAP19-3Q7Z4W3 81 aa5.53□□□□□ -1.52
PNKP-218ENST00000625299 MT4P47944 62 aa5.51□□□□□ -1.53
PNKP-218ENST00000625299 MP68P56378 58 aa5.51□□□□□ -1.53
PNKP-218ENST00000625299 AHNAK2Q8IVF2 5795 aa5.5□□□□□ -1.53
PNKP-218ENST00000625299 KRTAP19-7Q3SYF9 63 aa5.5□□□□□ -1.53
PNKP-218ENST00000625299 SMIM20Q8N5G0 67 aa5.5□□□□□ -1.53
PNKP-218ENST00000625299 MT1EP04732 61 aa5.49□□□□□ -1.53
PNKP-218ENST00000625299 DMAC1Q96GE9 116 aa5.48□□□□□ -1.53
PNKP-218ENST00000625299 CYSTM1Q9H1C7 97 aa5.47□□□□□ -1.53
PNKP-218ENST00000625299 LCE4AQ5TA78 99 aa5.44□□□□□ -1.54
PNKP-218ENST00000625299 OCR1Q9BZK8 76 aa5.44□□□□□ -1.54
PNKP-218ENST00000625299 TRAV7A0A075B6U4 112 aa5.43□□□□□ -1.54
PNKP-218ENST00000625299 SERP2Q8N6R1 65 aa5.41□□□□□ -1.54
PNKP-218ENST00000625299 KRTAP5-10Q6L8G5 202 aa5.39□□□□□ -1.55
PNKP-218ENST00000625299 CAMK2N1Q7Z7J9 78 aa5.39□□□□□ -1.55
PNKP-218ENST00000625299 COX7CP15954 63 aa5.38□□□□□ -1.55
PNKP-218ENST00000625299 ANAPC13Q9BS18 74 aa5.38□□□□□ -1.55
PNKP-218ENST00000625299 H3BPC8 53 aa5.36□□□□□ -1.55
PNKP-218ENST00000625299 MT1GP13640 62 aa5.33□□□□□ -1.56
PNKP-218ENST00000625299 PCP4P48539 62 aa5.32□□□□□ -1.56
PNKP-218ENST00000625299 PP632Q6XCG6 107 aa5.32□□□□□ -1.56
PNKP-218ENST00000625299 SPTSSBQ8NFR3 76 aa5.3□□□□□ -1.56
PNKP-218ENST00000625299 KRTAP19-5Q3LI72 72 aa5.29□□□□□ -1.56
PNKP-218ENST00000625299 ACYP2P14621 99 aa5.27□□□□□ -1.57
PNKP-218ENST00000625299 KRTAP4-6Q9BYQ5 205 aa5.27□□□□□ -1.57
PNKP-218ENST00000625299 MT1MQ8N339 61 aa5.26□□□□□ -1.57
PNKP-218ENST00000625299 A0A0D9SG42 100 aa5.25□□□□□ -1.57
PNKP-218ENST00000625299 CCDC179H3BU77 68 aa5.25□□□□□ -1.57
PNKP-218ENST00000625299 KRTAP13-4Q3LI77 160 aa5.25□□□□□ -1.57
PNKP-218ENST00000625299 KRTAP5-7Q6L8G8 165 aa5.23□□□□□ -1.57
PNKP-218ENST00000625299 KRTAP5-4Q6L8H1 288 aa5.23□□□□□ -1.57
PNKP-218ENST00000625299 CHKB-CPT1BH3BT56 60 aa5.22□□□□□ -1.57
PNKP-218ENST00000625299 KRTAP4-3Q9BYR4 195 aa5.2□□□□□ -1.58
PNKP-218ENST00000625299 H7BZZ5 65 aa5.19□□□□□ -1.58
PNKP-218ENST00000625299 SPANXA2-OT1Q8N9U9 137 aa5.18□□□□□ -1.58
PNKP-218ENST00000625299 SNURFQ9Y675 71 aa5.18□□□□□ -1.58
PNKP-218ENST00000625299 KRTAP5-3Q6L8H2 238 aa5.17□□□□□ -1.58
PNKP-218ENST00000625299 MT1LQ93083 61 aa5.17□□□□□ -1.58
PNKP-218ENST00000625299 TMEM258P61165 79 aa5.14□□□□□ -1.59
PNKP-218ENST00000625299 ATP5EP56381 51 aaPredicted RBP5.13□□□□□ -1.59
PNKP-218ENST00000625299 SPRR5A0A1B0GTR4 108 aa5.11□□□□□ -1.59
PNKP-218ENST00000625299 SPINT4Q6UDR6 99 aa5.05□□□□□ -1.6
PNKP-218ENST00000625299 RPS28P62857 69 aaKnown RBP5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms