RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 PRO0461Q9UI25 63 aa5.34□□□□□ -1.55
UPF3B-204ENST00000619445 CRIPTQ9P021 101 aa5.33□□□□□ -1.56
UPF3B-204ENST00000619445 K7EP34 96 aa5.32□□□□□ -1.56
UPF3B-204ENST00000619445 NEBP20929 6669 aa5.32□□□□□ -1.56
UPF3B-204ENST00000619445 KRTAP10-5P60370 271 aa5.3□□□□□ -1.56
UPF3B-204ENST00000619445 LOC105371267A0A1B0GV96 52 aa5.29□□□□□ -1.56
UPF3B-204ENST00000619445 GTF2H5Q6ZYL4 71 aa5.29□□□□□ -1.56
UPF3B-204ENST00000619445 LOC101927531A0A1B0GV80 90 aa5.29□□□□□ -1.56
UPF3B-204ENST00000619445 CYP4F30PQ9H0H9 118 aa5.29□□□□□ -1.56
UPF3B-204ENST00000619445 TRAV22A0A0B4J277 110 aa5.28□□□□□ -1.56
UPF3B-204ENST00000619445 F8W1H4 67 aa5.27□□□□□ -1.57
UPF3B-204ENST00000619445 IMUPQ9GZP8 106 aa5.27□□□□□ -1.57
UPF3B-204ENST00000619445 MUC12Q9UKN1 5478 aa5.25□□□□□ -1.57
UPF3B-204ENST00000619445 KRTAP4-7Q9BYR0 210 aa5.24□□□□□ -1.57
UPF3B-204ENST00000619445 H0YAA0 97 aa5.22□□□□□ -1.57
UPF3B-204ENST00000619445 ETDBQ3ZM63 59 aa5.22□□□□□ -1.57
UPF3B-204ENST00000619445 ATOX1O00244 68 aa5.21□□□□□ -1.58
UPF3B-204ENST00000619445 NDUFC1O43677 76 aa5.21□□□□□ -1.58
UPF3B-204ENST00000619445 ACYP1P07311 99 aa5.21□□□□□ -1.58
UPF3B-204ENST00000619445 KRTAP5-9P26371 169 aa5.21□□□□□ -1.58
UPF3B-204ENST00000619445 LCE1DQ5T752 114 aa5.21□□□□□ -1.58
UPF3B-204ENST00000619445 ATP5EP2Q5VTU8 51 aa5.2□□□□□ -1.58
UPF3B-204ENST00000619445 A0A0A0MQY5 61 aa5.19□□□□□ -1.58
UPF3B-204ENST00000619445 A8MUN3 132 aa5.18□□□□□ -1.58
UPF3B-204ENST00000619445 UQCRQO14949 82 aa5.18□□□□□ -1.58
UPF3B-204ENST00000619445 KRTAP20-1Q3LI63 56 aa5.16□□□□□ -1.58
UPF3B-204ENST00000619445 KMT2DO14686 5537 aa5.15□□□□□ -1.58
UPF3B-204ENST00000619445 A0A087WVE0 104 aa5.15□□□□□ -1.59
UPF3B-204ENST00000619445 FAM240AA0A1B0GVK7 77 aa5.15□□□□□ -1.59
UPF3B-204ENST00000619445 PRO2289Q9P1D8 64 aa5.15□□□□□ -1.59
UPF3B-204ENST00000619445 MDN1Q9NU22 5596 aa5.14□□□□□ -1.59
UPF3B-204ENST00000619445 H0Y9P7 68 aa5.14□□□□□ -1.59
UPF3B-204ENST00000619445 KRTAP5-3Q6L8H2 238 aa5.14□□□□□ -1.59
UPF3B-204ENST00000619445 HIST1H4AP62805 103 aaKnown RBP5.13□□□□□ -1.59
UPF3B-204ENST00000619445 LCE4AQ5TA78 99 aa5.11□□□□□ -1.59
UPF3B-204ENST00000619445 ADM2Q7Z4H4 148 aa5.09□□□□□ -1.59
UPF3B-204ENST00000619445 C20orf197Q8N268 126 aa5.07□□□□□ -1.6
UPF3B-204ENST00000619445 KRTAP4-9Q9BYQ8 210 aa5.07□□□□□ -1.6
UPF3B-204ENST00000619445 PLAC4Q8WY50 150 aa5.06□□□□□ -1.6
UPF3B-204ENST00000619445 MP68P56378 58 aa5.05□□□□□ -1.6
UPF3B-204ENST00000619445 KRTAP4-2Q9BYR5 136 aa5.05□□□□□ -1.6
UPF3B-204ENST00000619445 LINC00208Q96KT6 92 aa5.04□□□□□ -1.6
UPF3B-204ENST00000619445 LINC00643Q86TS7 51 aa5.04□□□□□ -1.6
UPF3B-204ENST00000619445 R4GN34 69 aa5.03□□□□□ -1.6
UPF3B-204ENST00000619445 PCP4L1A6NKN8 68 aa5.02□□□□□ -1.61
UPF3B-204ENST00000619445 KRTAP2-3P0C7H8 128 aa5.02□□□□□ -1.61
UPF3B-204ENST00000619445 KRTAP2-4Q9BYR9 128 aa5.02□□□□□ -1.61
UPF3B-204ENST00000619445 SPRR2FQ96RM1 72 aa5.01□□□□□ -1.61
UPF3B-204ENST00000619445 MT1XP80297 61 aa4.99□□□□□ -1.61
UPF3B-204ENST00000619445 H3BPC8 53 aa4.98□□□□□ -1.61
UPF3B-204ENST00000619445 KRTAP12-2P59991 146 aa4.97□□□□□ -1.61
UPF3B-204ENST00000619445 OCR1Q9BZK8 76 aa4.97□□□□□ -1.61
UPF3B-204ENST00000619445 SPRR2EP22531 72 aa4.96□□□□□ -1.62
UPF3B-204ENST00000619445 SPRR2BP35325 72 aa4.96□□□□□ -1.62
UPF3B-204ENST00000619445 SPRR2AP35326 72 aa4.96□□□□□ -1.62
UPF3B-204ENST00000619445 KRTAP8-1Q8IUC2 63 aa4.96□□□□□ -1.62
UPF3B-204ENST00000619445 M0QZ58 72 aa4.94□□□□□ -1.62
UPF3B-204ENST00000619445 DMAC1Q96GE9 116 aa4.92□□□□□ -1.62
UPF3B-204ENST00000619445 P0C880 135 aa4.91□□□□□ -1.62
UPF3B-204ENST00000619445 SCGB1A1P11684 91 aa4.87□□□□□ -1.63
UPF3B-204ENST00000619445 TRAV7A0A075B6U4 112 aa4.86□□□□□ -1.63
UPF3B-204ENST00000619445 J3QR89 54 aa4.86□□□□□ -1.63
UPF3B-204ENST00000619445 LINC01554Q52M75 96 aa4.86□□□□□ -1.63
UPF3B-204ENST00000619445 LCE1AQ5T7P2 110 aa4.86□□□□□ -1.63
UPF3B-204ENST00000619445 KRTAP4-11Q9BYQ6 195 aa4.86□□□□□ -1.63
UPF3B-204ENST00000619445 KRTAP2-2Q9BYT5 123 aa4.85□□□□□ -1.63
UPF3B-204ENST00000619445 KRTAP2-1Q9BYU5 128 aa4.85□□□□□ -1.63
UPF3B-204ENST00000619445 SPTSSBQ8NFR3 76 aa4.84□□□□□ -1.63
UPF3B-204ENST00000619445 KRTAP15-1Q3LI76 137 aa4.82□□□□□ -1.64
UPF3B-204ENST00000619445 ACYP2P14621 99 aa4.81□□□□□ -1.64
UPF3B-204ENST00000619445 SPRR2DP22532 72 aa4.8□□□□□ -1.64
UPF3B-204ENST00000619445 MT-ATP8P03928 68 aa4.79□□□□□ -1.64
UPF3B-204ENST00000619445 KRTAP10-12P60413 245 aa4.77□□□□□ -1.65
UPF3B-204ENST00000619445 SMIM20Q8N5G0 67 aa4.75□□□□□ -1.65
UPF3B-204ENST00000619445 KRTAP10-7P60409 375 aaPredicted RBP4.73□□□□□ -1.65
UPF3B-204ENST00000619445 CHKB-CPT1BH3BT56 60 aa4.72□□□□□ -1.65
UPF3B-204ENST00000619445 A0A1B0GV90 55 aa4.71□□□□□ -1.66
UPF3B-204ENST00000619445 LCE5AQ5TCM9 118 aa4.71□□□□□ -1.66
UPF3B-204ENST00000619445 CAMK2N1Q7Z7J9 78 aa4.6□□□□□ -1.67
UPF3B-204ENST00000619445 SPANXA2-OT1Q8N9U9 137 aa4.6□□□□□ -1.67
UPF3B-204ENST00000619445 K7ERU9 68 aa4.57□□□□□ -1.68
UPF3B-204ENST00000619445 GPR98Q8WXG9 6306 aa4.56□□□□□ -1.68
UPF3B-204ENST00000619445 SNURFQ9Y675 71 aa4.54□□□□□ -1.68
UPF3B-204ENST00000619445 KRTAP13-4Q3LI77 160 aa4.51□□□□□ -1.69
UPF3B-204ENST00000619445 SEC61GP60059 68 aa4.5□□□□□ -1.69
UPF3B-204ENST00000619445 SERP1Q9Y6X1 66 aa4.48□□□□□ -1.69
UPF3B-204ENST00000619445 SERP2Q8N6R1 65 aa4.47□□□□□ -1.69
UPF3B-204ENST00000619445 KRTAP19-7Q3SYF9 63 aa4.46□□□□□ -1.7
UPF3B-204ENST00000619445 KRTAP19-3Q7Z4W3 81 aa4.46□□□□□ -1.7
UPF3B-204ENST00000619445 DSTQ03001 7570 aaKnown RBP4.46□□□□□ -1.7
UPF3B-204ENST00000619445 MT1EP04732 61 aa4.44□□□□□ -1.7
UPF3B-204ENST00000619445 COA5Q86WW8 74 aa4.42□□□□□ -1.7
UPF3B-204ENST00000619445 A0A0D9SG42 100 aa4.4□□□□□ -1.71
UPF3B-204ENST00000619445 A0A1B0GU33 70 aa4.38□□□□□ -1.71
UPF3B-204ENST00000619445 PP632Q6XCG6 107 aa4.38□□□□□ -1.71
UPF3B-204ENST00000619445 MT1GP13640 62 aa4.37□□□□□ -1.71
UPF3B-204ENST00000619445 SPINT4Q6UDR6 99 aa4.37□□□□□ -1.71
UPF3B-204ENST00000619445 CYSTM1Q9H1C7 97 aa4.37□□□□□ -1.71
UPF3B-204ENST00000619445 SPATA8Q6RVD6 105 aa4.34□□□□□ -1.71
UPF3B-204ENST00000619445 PRAC1Q96KF2 57 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 135.8 ms