RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 FAT4Q6V0I7 4981 aa8.05□□□□□ -1.12
SS18-211ENST00000578954 DMAC1Q96GE9 116 aa8.05□□□□□ -1.12
SS18-211ENST00000578954 H1FX-AS1Q4G0G2 97 aa8.02□□□□□ -1.13
SS18-211ENST00000578954 FLGP20930 4061 aaPredicted RBP8.01□□□□□ -1.13
SS18-211ENST00000578954 TMEM258P61165 79 aa7.95□□□□□ -1.14
SS18-211ENST00000578954 ACYP2P14621 99 aa7.93□□□□□ -1.14
SS18-211ENST00000578954 ATP5EP56381 51 aaPredicted RBP7.92□□□□□ -1.14
SS18-211ENST00000578954 MT1HP80294 61 aa7.92□□□□□ -1.14
SS18-211ENST00000578954 S4R3F8 94 aa7.89□□□□□ -1.15
SS18-211ENST00000578954 LCA10Q71F78 164 aa7.85□□□□□ -1.15
SS18-211ENST00000578954 COA5Q86WW8 74 aa7.81□□□□□ -1.16
SS18-211ENST00000578954 CHKB-CPT1BH3BT56 60 aa7.76□□□□□ -1.17
SS18-211ENST00000578954 CSAG1Q6PB30 78 aa7.75□□□□□ -1.17
SS18-211ENST00000578954 M0R2T5 61 aa7.73□□□□□ -1.17
SS18-211ENST00000578954 SPTSSBQ8NFR3 76 aa7.7□□□□□ -1.18
SS18-211ENST00000578954 SERP1Q9Y6X1 66 aa7.69□□□□□ -1.18
SS18-211ENST00000578954 KRTAP10-6P60371 365 aaPredicted RBP7.67□□□□□ -1.18
SS18-211ENST00000578954 KRTAP4-8Q9BYQ9 185 aa7.66□□□□□ -1.18
SS18-211ENST00000578954 H0YAA0 97 aa7.61□□□□□ -1.19
SS18-211ENST00000578954 KRTAP9-8Q9BYQ0 159 aa7.6□□□□□ -1.19
SS18-211ENST00000578954 RPS28P62857 69 aaKnown RBP7.57□□□□□ -1.2
SS18-211ENST00000578954 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.54□□□□□ -1.2
SS18-211ENST00000578954 MT2AP02795 61 aa7.54□□□□□ -1.2
SS18-211ENST00000578954 KRTAP9-2Q9BYQ4 174 aa7.53□□□□□ -1.2
SS18-211ENST00000578954 KRTAP9-6A0A140TA67 174 aa7.49□□□□□ -1.21
SS18-211ENST00000578954 MT1FP04733 61 aa7.48□□□□□ -1.21
SS18-211ENST00000578954 ADM2Q7Z4H4 148 aa7.48□□□□□ -1.21
SS18-211ENST00000578954 LINC01558Q9Y6Z2 57 aa7.45□□□□□ -1.22
SS18-211ENST00000578954 SMIM26A0A096LP01 95 aa7.44□□□□□ -1.22
SS18-211ENST00000578954 P0C880 135 aa7.42□□□□□ -1.22
SS18-211ENST00000578954 KRTAP10-10P60014 251 aa7.41□□□□□ -1.22
SS18-211ENST00000578954 SEC61GP60059 68 aa7.39□□□□□ -1.23
SS18-211ENST00000578954 Q1T7F1 81 aa7.38□□□□□ -1.23
SS18-211ENST00000578954 V9GYY9 64 aa7.38□□□□□ -1.23
SS18-211ENST00000578954 A0A1B0GU69 56 aa7.37□□□□□ -1.23
SS18-211ENST00000578954 CRIPTQ9P021 101 aa7.37□□□□□ -1.23
SS18-211ENST00000578954 KRTAP9-3Q9BYQ3 159 aa7.34□□□□□ -1.23
SS18-211ENST00000578954 KRTAP4-12Q9BQ66 201 aa7.32□□□□□ -1.24
SS18-211ENST00000578954 PRR15LQ9BU68 103 aa7.32□□□□□ -1.24
SS18-211ENST00000578954 LCE3BQ5TA77 95 aa7.29□□□□□ -1.24
SS18-211ENST00000578954 SPRR2GQ9BYE4 73 aa7.28□□□□□ -1.24
SS18-211ENST00000578954 KRTAP19-1Q8IUB9 90 aa7.27□□□□□ -1.25
SS18-211ENST00000578954 A0A1B0GU33 70 aa7.24□□□□□ -1.25
SS18-211ENST00000578954 M0QZ58 72 aa7.24□□□□□ -1.25
SS18-211ENST00000578954 R4GN34 69 aa7.24□□□□□ -1.25
SS18-211ENST00000578954 PSPHP1O15172 72 aa7.2□□□□□ -1.26
SS18-211ENST00000578954 KRTAP13-4Q3LI77 160 aa7.2□□□□□ -1.26
SS18-211ENST00000578954 Q5VV11 94 aa7.19□□□□□ -1.26
SS18-211ENST00000578954 KRTAP9-9Q9BYP9 154 aa7.16□□□□□ -1.26
SS18-211ENST00000578954 KRTAP9-4Q9BYQ2 154 aa7.16□□□□□ -1.26
SS18-211ENST00000578954 KRTAP19-8Q3LI54 63 aa7.15□□□□□ -1.26
SS18-211ENST00000578954 UQCR11O14957 56 aa7.11□□□□□ -1.27
SS18-211ENST00000578954 SPATA8Q6RVD6 105 aa7.11□□□□□ -1.27
SS18-211ENST00000578954 KRTAP4-8A0A0G2JLE6 195 aa7.05□□□□□ -1.28
SS18-211ENST00000578954 MT1BP07438 61 aa7.05□□□□□ -1.28
SS18-211ENST00000578954 A6NN06 94 aa7.04□□□□□ -1.28
SS18-211ENST00000578954 LINC01554Q52M75 96 aa7.04□□□□□ -1.28
SS18-211ENST00000578954 USH2AO75445 5202 aa7.02□□□□□ -1.29
SS18-211ENST00000578954 MIR22HGQ0VDD5 57 aa7□□□□□ -1.29
SS18-211ENST00000578954 A6NED7 52 aa6.99□□□□□ -1.29
SS18-211ENST00000578954 A0A0D9SG42 100 aa6.97□□□□□ -1.29
SS18-211ENST00000578954 A8MU10 97 aa6.97□□□□□ -1.29
SS18-211ENST00000578954 KRTAP12-1P59990 96 aa6.91□□□□□ -1.3
SS18-211ENST00000578954 PLAC4Q8WY50 150 aa6.91□□□□□ -1.3
SS18-211ENST00000578954 CDC42SE1Q9NRR8 79 aa6.88□□□□□ -1.31
SS18-211ENST00000578954 CRCT1Q9UGL9 99 aa6.88□□□□□ -1.31
SS18-211ENST00000578954 KRTAP12-2P59991 146 aa6.86□□□□□ -1.31
SS18-211ENST00000578954 SSPOA2VEC9 5147 aa6.85□□□□□ -1.31
SS18-211ENST00000578954 SPINT4Q6UDR6 99 aa6.84□□□□□ -1.31
SS18-211ENST00000578954 KRTAP19-6Q3LI70 58 aa6.83□□□□□ -1.32
SS18-211ENST00000578954 LCE1DQ5T752 114 aa6.83□□□□□ -1.32
SS18-211ENST00000578954 KRTAP4-7Q9BYR0 210 aa6.81□□□□□ -1.32
SS18-211ENST00000578954 FSIP2Q5CZC0 6907 aa6.8□□□□□ -1.32
SS18-211ENST00000578954 KRTAP10-5P60370 271 aa6.75□□□□□ -1.33
SS18-211ENST00000578954 MT1XP80297 61 aa6.75□□□□□ -1.33
SS18-211ENST00000578954 CAMK2N1Q7Z7J9 78 aa6.73□□□□□ -1.33
SS18-211ENST00000578954 K7ERS5 55 aa6.72□□□□□ -1.33
SS18-211ENST00000578954 BRK1Q8WUW1 75 aa6.7□□□□□ -1.34
SS18-211ENST00000578954 PRO2289Q9P1D8 64 aa6.69□□□□□ -1.34
SS18-211ENST00000578954 KRTAP4-9Q9BYQ8 210 aa6.64□□□□□ -1.35
SS18-211ENST00000578954 FCGBPQ9Y6R7 5405 aaPredicted RBP6.59□□□□□ -1.35
SS18-211ENST00000578954 C10orf95Q9H7T3 257 aa6.55□□□□□ -1.36
SS18-211ENST00000578954 LCE4AQ5TA78 99 aa6.53□□□□□ -1.36
SS18-211ENST00000578954 KRTAP4-2Q9BYR5 136 aa6.52□□□□□ -1.37
SS18-211ENST00000578954 PRO0628Q9UI54 55 aa6.46□□□□□ -1.38
SS18-211ENST00000578954 KRTAP10-7P60409 375 aaPredicted RBP6.44□□□□□ -1.38
SS18-211ENST00000578954 KRTAP10-12P60413 245 aa6.43□□□□□ -1.38
SS18-211ENST00000578954 ROMO1P60602 79 aa6.42□□□□□ -1.38
SS18-211ENST00000578954 TNP1P09430 55 aa6.4□□□□□ -1.38
SS18-211ENST00000578954 KRTAP19-4Q3LI73 84 aa6.39□□□□□ -1.39
SS18-211ENST00000578954 KRTAP4-11Q9BYQ6 195 aa6.39□□□□□ -1.39
SS18-211ENST00000578954 KRTAP9-7A8MTY7 169 aa6.37□□□□□ -1.39
SS18-211ENST00000578954 KRTAP25-1Q3LHN0 102 aa6.36□□□□□ -1.39
SS18-211ENST00000578954 PMAIP1Q13794 54 aa6.33□□□□□ -1.4
SS18-211ENST00000578954 MACF1Q9UPN3 7388 aaKnown RBP6.27□□□□□ -1.41
SS18-211ENST00000578954 LCE5AQ5TCM9 118 aa6.25□□□□□ -1.41
SS18-211ENST00000578954 KRTAP23-1A1A580 65 aa6.19□□□□□ -1.42
SS18-211ENST00000578954 KMT2DO14686 5537 aa6.18□□□□□ -1.42
SS18-211ENST00000578954 LCE3AQ5TA76 89 aa6.17□□□□□ -1.42
SS18-211ENST00000578954 KRTAP8-1Q8IUC2 63 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms