RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 MUC12Q9UKN1 5478 aa6.94□□□□□ -1.3
VPS39-210ENST00000568357 UQCRQO14949 82 aa6.94□□□□□ -1.3
VPS39-210ENST00000568357 KRTAP20-1Q3LI63 56 aa6.93□□□□□ -1.3
VPS39-210ENST00000568357 CSAG1Q6PB30 78 aa6.93□□□□□ -1.3
VPS39-210ENST00000568357 H0Y9P7 68 aa6.9□□□□□ -1.3
VPS39-210ENST00000568357 ATOX1O00244 68 aa6.87□□□□□ -1.31
VPS39-210ENST00000568357 FAM236AA0A1B0GUQ0 79 aa6.86□□□□□ -1.31
VPS39-210ENST00000568357 FAM236BA0A1B0GV22 79 aa6.86□□□□□ -1.31
VPS39-210ENST00000568357 OCR1Q9BZK8 76 aa6.83□□□□□ -1.32
VPS39-210ENST00000568357 J3QR89 54 aa6.81□□□□□ -1.32
VPS39-210ENST00000568357 LCE3BQ5TA77 95 aa6.81□□□□□ -1.32
VPS39-210ENST00000568357 LINC00208Q96KT6 92 aa6.81□□□□□ -1.32
VPS39-210ENST00000568357 KLKP1Q107X0 134 aa6.8□□□□□ -1.32
VPS39-210ENST00000568357 SPRR2GQ9BYE4 73 aa6.77□□□□□ -1.33
VPS39-210ENST00000568357 MP68P56378 58 aa6.76□□□□□ -1.33
VPS39-210ENST00000568357 MT1BP07438 61 aa6.73□□□□□ -1.33
VPS39-210ENST00000568357 A8MUN3 132 aa6.72□□□□□ -1.33
VPS39-210ENST00000568357 NDUFC1O43677 76 aa6.72□□□□□ -1.33
VPS39-210ENST00000568357 KRTAP19-8Q3LI54 63 aa6.71□□□□□ -1.34
VPS39-210ENST00000568357 KRTAP4-12Q9BQ66 201 aa6.7□□□□□ -1.34
VPS39-210ENST00000568357 SCGB1A1P11684 91 aa6.69□□□□□ -1.34
VPS39-210ENST00000568357 KRTAP9-9Q9BYP9 154 aa6.69□□□□□ -1.34
VPS39-210ENST00000568357 KRTAP9-4Q9BYQ2 154 aa6.69□□□□□ -1.34
VPS39-210ENST00000568357 IMUPQ9GZP8 106 aa6.69□□□□□ -1.34
VPS39-210ENST00000568357 Q5VV11 94 aa6.68□□□□□ -1.34
VPS39-210ENST00000568357 KRTAP4-8A0A0G2JLE6 195 aa6.67□□□□□ -1.34
VPS39-210ENST00000568357 H3BPC8 53 aa6.66□□□□□ -1.34
VPS39-210ENST00000568357 CRIPTQ9P021 101 aa6.65□□□□□ -1.34
VPS39-210ENST00000568357 H0YAA0 97 aa6.64□□□□□ -1.35
VPS39-210ENST00000568357 MT-ATP8P03928 68 aa6.63□□□□□ -1.35
VPS39-210ENST00000568357 ADM2Q7Z4H4 148 aa6.6□□□□□ -1.35
VPS39-210ENST00000568357 MDN1Q9NU22 5596 aa6.59□□□□□ -1.35
VPS39-210ENST00000568357 A6NN06 94 aa6.59□□□□□ -1.35
VPS39-210ENST00000568357 K7ERU9 68 aa6.59□□□□□ -1.35
VPS39-210ENST00000568357 DMAC1Q96GE9 116 aa6.58□□□□□ -1.36
VPS39-210ENST00000568357 H3BS24 57 aa6.56□□□□□ -1.36
VPS39-210ENST00000568357 KMT2DO14686 5537 aa6.55□□□□□ -1.36
VPS39-210ENST00000568357 KRTAP2-3P0C7H8 128 aa6.54□□□□□ -1.36
VPS39-210ENST00000568357 KRTAP5-9P26371 169 aa6.54□□□□□ -1.36
VPS39-210ENST00000568357 KRTAP10-5P60370 271 aa6.54□□□□□ -1.36
VPS39-210ENST00000568357 KRTAP2-4Q9BYR9 128 aa6.54□□□□□ -1.36
VPS39-210ENST00000568357 TRAV7A0A075B6U4 112 aa6.52□□□□□ -1.37
VPS39-210ENST00000568357 SMIM20Q8N5G0 67 aa6.5□□□□□ -1.37
VPS39-210ENST00000568357 P0C880 135 aa6.47□□□□□ -1.37
VPS39-210ENST00000568357 KRTAP4-7Q9BYR0 210 aa6.46□□□□□ -1.38
VPS39-210ENST00000568357 ACYP2P14621 99 aa6.42□□□□□ -1.38
VPS39-210ENST00000568357 SNURFQ9Y675 71 aa6.4□□□□□ -1.38
VPS39-210ENST00000568357 R4GN34 69 aa6.4□□□□□ -1.38
VPS39-210ENST00000568357 C20orf197Q8N268 126 aa6.39□□□□□ -1.39
VPS39-210ENST00000568357 M0QZ58 72 aa6.36□□□□□ -1.39
VPS39-210ENST00000568357 LCE1DQ5T752 114 aa6.36□□□□□ -1.39
VPS39-210ENST00000568357 PLAC4Q8WY50 150 aa6.34□□□□□ -1.39
VPS39-210ENST00000568357 MT1XP80297 61 aa6.33□□□□□ -1.4
VPS39-210ENST00000568357 SERP2Q8N6R1 65 aa6.32□□□□□ -1.4
VPS39-210ENST00000568357 SPTSSBQ8NFR3 76 aa6.3□□□□□ -1.4
VPS39-210ENST00000568357 KRTAP2-2Q9BYT5 123 aa6.3□□□□□ -1.4
VPS39-210ENST00000568357 KRTAP2-1Q9BYU5 128 aa6.3□□□□□ -1.4
VPS39-210ENST00000568357 CHKB-CPT1BH3BT56 60 aa6.29□□□□□ -1.4
VPS39-210ENST00000568357 LINC01554Q52M75 96 aa6.28□□□□□ -1.4
VPS39-210ENST00000568357 SPANXA2-OT1Q8N9U9 137 aa6.28□□□□□ -1.4
VPS39-210ENST00000568357 SPRR2EP22531 72 aa6.27□□□□□ -1.41
VPS39-210ENST00000568357 SPRR2BP35325 72 aa6.27□□□□□ -1.41
VPS39-210ENST00000568357 SPRR2AP35326 72 aa6.27□□□□□ -1.41
VPS39-210ENST00000568357 PRO2289Q9P1D8 64 aa6.27□□□□□ -1.41
VPS39-210ENST00000568357 GPR98Q8WXG9 6306 aa6.27□□□□□ -1.41
VPS39-210ENST00000568357 KRTAP4-9Q9BYQ8 210 aa6.22□□□□□ -1.41
VPS39-210ENST00000568357 SPRR2FQ96RM1 72 aa6.21□□□□□ -1.42
VPS39-210ENST00000568357 KRTAP4-2Q9BYR5 136 aa6.19□□□□□ -1.42
VPS39-210ENST00000568357 COX7CP15954 63 aa6.14□□□□□ -1.43
VPS39-210ENST00000568357 KRTAP12-2P59991 146 aa6.12□□□□□ -1.43
VPS39-210ENST00000568357 COA5Q86WW8 74 aa6.11□□□□□ -1.43
VPS39-210ENST00000568357 LCE1AQ5T7P2 110 aa6.1□□□□□ -1.43
VPS39-210ENST00000568357 CYSTM1Q9H1C7 97 aa6.09□□□□□ -1.43
VPS39-210ENST00000568357 KRTAP13-4Q3LI77 160 aa6.08□□□□□ -1.44
VPS39-210ENST00000568357 SPRR2DP22532 72 aa6.07□□□□□ -1.44
VPS39-210ENST00000568357 KRTAP8-1Q8IUC2 63 aa6.06□□□□□ -1.44
VPS39-210ENST00000568357 H7BZZ5 65 aa6.05□□□□□ -1.44
VPS39-210ENST00000568357 KRTAP10-7P60409 375 aaPredicted RBP6.05□□□□□ -1.44
VPS39-210ENST00000568357 KRTAP10-12P60413 245 aa6□□□□□ -1.45
VPS39-210ENST00000568357 SEC61GP60059 68 aa5.95□□□□□ -1.46
VPS39-210ENST00000568357 SERP1Q9Y6X1 66 aa5.95□□□□□ -1.46
VPS39-210ENST00000568357 ANAPC13Q9BS18 74 aa5.94□□□□□ -1.46
VPS39-210ENST00000568357 KRTAP4-11Q9BYQ6 195 aa5.94□□□□□ -1.46
VPS39-210ENST00000568357 SPATA8Q6RVD6 105 aa5.9□□□□□ -1.46
VPS39-210ENST00000568357 CAMK2N1Q7Z7J9 78 aa5.89□□□□□ -1.47
VPS39-210ENST00000568357 A0A0D9SG42 100 aa5.88□□□□□ -1.47
VPS39-210ENST00000568357 A0A1B0GU33 70 aa5.88□□□□□ -1.47
VPS39-210ENST00000568357 CCDC179H3BU77 68 aa5.87□□□□□ -1.47
VPS39-210ENST00000568357 DSTQ03001 7570 aaKnown RBP5.83□□□□□ -1.48
VPS39-210ENST00000568357 KRTAP5-3Q6L8H2 238 aa5.8□□□□□ -1.48
VPS39-210ENST00000568357 KRTAP19-4Q3LI73 84 aa5.79□□□□□ -1.48
VPS39-210ENST00000568357 A0A1B0GU69 56 aa5.78□□□□□ -1.48
VPS39-210ENST00000568357 SPINT4Q6UDR6 99 aa5.78□□□□□ -1.48
VPS39-210ENST00000568357 KRTAP12-1P59990 96 aa5.77□□□□□ -1.49
VPS39-210ENST00000568357 LCE4AQ5TA78 99 aa5.72□□□□□ -1.49
VPS39-210ENST00000568357 A8MU10 97 aa5.7□□□□□ -1.5
VPS39-210ENST00000568357 ATP5EP56381 51 aaPredicted RBP5.7□□□□□ -1.5
VPS39-210ENST00000568357 SMIM26A0A096LP01 95 aa5.69□□□□□ -1.5
VPS39-210ENST00000568357 KRTAP19-7Q3SYF9 63 aa5.65□□□□□ -1.5
VPS39-210ENST00000568357 LINC01558Q9Y6Z2 57 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms