RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 A0A087WVE0 104 aa8.16□□□□□ -1.1
CLN3-218ENST00000565688 KRTAP5-9P26371 169 aa8.16□□□□□ -1.1
CLN3-218ENST00000565688 ETDBQ3ZM63 59 aa8.16□□□□□ -1.1
CLN3-218ENST00000565688 KRTAP20-1Q3LI63 56 aa8.12□□□□□ -1.11
CLN3-218ENST00000565688 PCP4L1A6NKN8 68 aa8.1□□□□□ -1.11
CLN3-218ENST00000565688 H0YAA0 97 aa8.1□□□□□ -1.11
CLN3-218ENST00000565688 NDUFC1O43677 76 aa8.1□□□□□ -1.11
CLN3-218ENST00000565688 KMT2DO14686 5537 aa8.08□□□□□ -1.12
CLN3-218ENST00000565688 ATOX1O00244 68 aa8.07□□□□□ -1.12
CLN3-218ENST00000565688 UQCRQO14949 82 aa8.06□□□□□ -1.12
CLN3-218ENST00000565688 ACYP1P07311 99 aa8.06□□□□□ -1.12
CLN3-218ENST00000565688 ATP5EP2Q5VTU8 51 aa8.04□□□□□ -1.12
CLN3-218ENST00000565688 H0Y9P7 68 aa8.03□□□□□ -1.12
CLN3-218ENST00000565688 MDN1Q9NU22 5596 aa8.02□□□□□ -1.13
CLN3-218ENST00000565688 A8MUN3 132 aa8.01□□□□□ -1.13
CLN3-218ENST00000565688 HIST1H4AP62805 103 aaKnown RBP8□□□□□ -1.13
CLN3-218ENST00000565688 FAM240AA0A1B0GVK7 77 aa7.98□□□□□ -1.13
CLN3-218ENST00000565688 ADM2Q7Z4H4 148 aa7.98□□□□□ -1.13
CLN3-218ENST00000565688 PRO2289Q9P1D8 64 aa7.97□□□□□ -1.13
CLN3-218ENST00000565688 PLAC4Q8WY50 150 aa7.88□□□□□ -1.15
CLN3-218ENST00000565688 LINC00208Q96KT6 92 aa7.88□□□□□ -1.15
CLN3-218ENST00000565688 MT1XP80297 61 aa7.87□□□□□ -1.15
CLN3-218ENST00000565688 KRTAP2-3P0C7H8 128 aa7.86□□□□□ -1.15
CLN3-218ENST00000565688 SPRR2FQ96RM1 72 aa7.86□□□□□ -1.15
CLN3-218ENST00000565688 KRTAP2-4Q9BYR9 128 aa7.86□□□□□ -1.15
CLN3-218ENST00000565688 MP68P56378 58 aa7.83□□□□□ -1.16
CLN3-218ENST00000565688 LINC00643Q86TS7 51 aa7.83□□□□□ -1.16
CLN3-218ENST00000565688 C20orf197Q8N268 126 aa7.81□□□□□ -1.16
CLN3-218ENST00000565688 R4GN34 69 aa7.81□□□□□ -1.16
CLN3-218ENST00000565688 SPRR2EP22531 72 aa7.8□□□□□ -1.16
CLN3-218ENST00000565688 SPRR2BP35325 72 aa7.8□□□□□ -1.16
CLN3-218ENST00000565688 SPRR2AP35326 72 aa7.8□□□□□ -1.16
CLN3-218ENST00000565688 KRTAP8-1Q8IUC2 63 aa7.78□□□□□ -1.16
CLN3-218ENST00000565688 OCR1Q9BZK8 76 aa7.78□□□□□ -1.16
CLN3-218ENST00000565688 KRTAP12-2P59991 146 aa7.75□□□□□ -1.17
CLN3-218ENST00000565688 P0C880 135 aa7.74□□□□□ -1.17
CLN3-218ENST00000565688 M0QZ58 72 aa7.72□□□□□ -1.17
CLN3-218ENST00000565688 A0A1B0GV90 55 aa7.69□□□□□ -1.18
CLN3-218ENST00000565688 H3BPC8 53 aa7.69□□□□□ -1.18
CLN3-218ENST00000565688 DMAC1Q96GE9 116 aa7.68□□□□□ -1.18
CLN3-218ENST00000565688 LCE1AQ5T7P2 110 aa7.66□□□□□ -1.18
CLN3-218ENST00000565688 KRTAP3-2Q9BYR7 98 aa7.63□□□□□ -1.19
CLN3-218ENST00000565688 LINC01554Q52M75 96 aa7.62□□□□□ -1.19
CLN3-218ENST00000565688 KRTAP2-2Q9BYT5 123 aa7.59□□□□□ -1.19
CLN3-218ENST00000565688 KRTAP2-1Q9BYU5 128 aa7.59□□□□□ -1.19
CLN3-218ENST00000565688 KRTAP4-8A0A0G2JLE6 195 aa7.57□□□□□ -1.2
CLN3-218ENST00000565688 KRTAP4-8Q9BYQ9 185 aa7.57□□□□□ -1.2
CLN3-218ENST00000565688 SCGB1A1P11684 91 aa7.55□□□□□ -1.2
CLN3-218ENST00000565688 SPRR2DP22532 72 aa7.55□□□□□ -1.2
CLN3-218ENST00000565688 TRAV7A0A075B6U4 112 aa7.53□□□□□ -1.2
CLN3-218ENST00000565688 J3QR89 54 aa7.49□□□□□ -1.21
CLN3-218ENST00000565688 KRTAP10-7P60409 375 aaPredicted RBP7.49□□□□□ -1.21
CLN3-218ENST00000565688 KRTAP10-12P60413 245 aa7.48□□□□□ -1.21
CLN3-218ENST00000565688 ACYP2P14621 99 aa7.46□□□□□ -1.22
CLN3-218ENST00000565688 MT-ATP8P03928 68 aa7.45□□□□□ -1.22
CLN3-218ENST00000565688 SPTSSBQ8NFR3 76 aa7.45□□□□□ -1.22
CLN3-218ENST00000565688 LCE3BQ5TA77 95 aa7.36□□□□□ -1.23
CLN3-218ENST00000565688 CHKB-CPT1BH3BT56 60 aa7.32□□□□□ -1.24
CLN3-218ENST00000565688 SMIM20Q8N5G0 67 aa7.3□□□□□ -1.24
CLN3-218ENST00000565688 K7ERU9 68 aa7.28□□□□□ -1.24
CLN3-218ENST00000565688 CAMK2N1Q7Z7J9 78 aa7.16□□□□□ -1.26
CLN3-218ENST00000565688 SNURFQ9Y675 71 aa7.13□□□□□ -1.27
CLN3-218ENST00000565688 KRTAP13-4Q3LI77 160 aa7.12□□□□□ -1.27
CLN3-218ENST00000565688 SPANXA2-OT1Q8N9U9 137 aa7.12□□□□□ -1.27
CLN3-218ENST00000565688 LCE5AQ5TCM9 118 aa7.04□□□□□ -1.28
CLN3-218ENST00000565688 KRTAP19-7Q3SYF9 63 aa7.03□□□□□ -1.28
CLN3-218ENST00000565688 DSTQ03001 7570 aaKnown RBP6.99□□□□□ -1.29
CLN3-218ENST00000565688 MT1EP04732 61 aa6.99□□□□□ -1.29
CLN3-218ENST00000565688 KRTAP19-3Q7Z4W3 81 aa6.99□□□□□ -1.29
CLN3-218ENST00000565688 SEC61GP60059 68 aa6.94□□□□□ -1.3
CLN3-218ENST00000565688 SERP2Q8N6R1 65 aa6.94□□□□□ -1.3
CLN3-218ENST00000565688 GPR98Q8WXG9 6306 aa6.92□□□□□ -1.3
CLN3-218ENST00000565688 A0A0D9SG42 100 aa6.91□□□□□ -1.3
CLN3-218ENST00000565688 COA5Q86WW8 74 aa6.91□□□□□ -1.3
CLN3-218ENST00000565688 SERP1Q9Y6X1 66 aa6.91□□□□□ -1.3
CLN3-218ENST00000565688 KRTAP4-9Q9BYQ8 210 aa6.87□□□□□ -1.31
CLN3-218ENST00000565688 CYSTM1Q9H1C7 97 aa6.84□□□□□ -1.31
CLN3-218ENST00000565688 SPATA8Q6RVD6 105 aa6.83□□□□□ -1.32
CLN3-218ENST00000565688 SPINT4Q6UDR6 99 aa6.83□□□□□ -1.32
CLN3-218ENST00000565688 A0A1B0GU33 70 aa6.81□□□□□ -1.32
CLN3-218ENST00000565688 MT1GP13640 62 aa6.81□□□□□ -1.32
CLN3-218ENST00000565688 KRTAP19-5Q3LI72 72 aa6.8□□□□□ -1.32
CLN3-218ENST00000565688 PP632Q6XCG6 107 aa6.78□□□□□ -1.32
CLN3-218ENST00000565688 KRTAP12-1P59990 96 aa6.76□□□□□ -1.33
CLN3-218ENST00000565688 COX7CP15954 63 aa6.72□□□□□ -1.33
CLN3-218ENST00000565688 LCE1DQ5T752 114 aa6.71□□□□□ -1.34
CLN3-218ENST00000565688 LCE4AQ5TA78 99 aa6.68□□□□□ -1.34
CLN3-218ENST00000565688 MT1MQ8N339 61 aa6.67□□□□□ -1.34
CLN3-218ENST00000565688 SMIM26A0A096LP01 95 aa6.64□□□□□ -1.35
CLN3-218ENST00000565688 MT1LQ93083 61 aa6.64□□□□□ -1.35
CLN3-218ENST00000565688 HMCN1Q96RW7 5635 aa6.63□□□□□ -1.35
CLN3-218ENST00000565688 H7BZZ5 65 aa6.6□□□□□ -1.35
CLN3-218ENST00000565688 MT4P47944 62 aa6.6□□□□□ -1.35
CLN3-218ENST00000565688 A0A1B0GU69 56 aa6.58□□□□□ -1.36
CLN3-218ENST00000565688 TNP1P09430 55 aa6.54□□□□□ -1.36
CLN3-218ENST00000565688 ANAPC13Q9BS18 74 aa6.54□□□□□ -1.36
CLN3-218ENST00000565688 C10orf95Q9H7T3 257 aa6.54□□□□□ -1.36
CLN3-218ENST00000565688 LCE3AQ5TA76 89 aa6.53□□□□□ -1.36
CLN3-218ENST00000565688 A8MU10 97 aa6.52□□□□□ -1.37
CLN3-218ENST00000565688 KRTAP5-4Q6L8H1 288 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms