RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 LCA10Q71F78 164 aa7.06□□□□□ -1.28
CLK3-211ENST00000563297 A0A087WVE0 104 aa7.03□□□□□ -1.28
CLK3-211ENST00000563297 MUC12Q9UKN1 5478 aa7.01□□□□□ -1.29
CLK3-211ENST00000563297 SCGB1A1P11684 91 aa7□□□□□ -1.29
CLK3-211ENST00000563297 KRTAP10-5P60370 271 aa7□□□□□ -1.29
CLK3-211ENST00000563297 NEBP20929 6669 aa6.99□□□□□ -1.29
CLK3-211ENST00000563297 KLKP1Q107X0 134 aa6.98□□□□□ -1.29
CLK3-211ENST00000563297 KRTAP3-3Q9BYR6 98 aa6.96□□□□□ -1.3
CLK3-211ENST00000563297 TP53AIP1Q9HCN2 124 aa6.96□□□□□ -1.3
CLK3-211ENST00000563297 ATOX1O00244 68 aa6.9□□□□□ -1.3
CLK3-211ENST00000563297 KRTAP5-9P26371 169 aa6.89□□□□□ -1.31
CLK3-211ENST00000563297 SMIM20Q8N5G0 67 aa6.89□□□□□ -1.31
CLK3-211ENST00000563297 CYP4F30PQ9H0H9 118 aa6.89□□□□□ -1.31
CLK3-211ENST00000563297 CRIPTQ9P021 101 aa6.86□□□□□ -1.31
CLK3-211ENST00000563297 KRTAP20-1Q3LI63 56 aa6.85□□□□□ -1.31
CLK3-211ENST00000563297 TRAV7A0A075B6U4 112 aa6.84□□□□□ -1.31
CLK3-211ENST00000563297 ANAPC13Q9BS18 74 aa6.84□□□□□ -1.31
CLK3-211ENST00000563297 UQCRQO14949 82 aa6.83□□□□□ -1.32
CLK3-211ENST00000563297 KMT2DO14686 5537 aa6.82□□□□□ -1.32
CLK3-211ENST00000563297 SERP2Q8N6R1 65 aa6.8□□□□□ -1.32
CLK3-211ENST00000563297 OCR1Q9BZK8 76 aa6.8□□□□□ -1.32
CLK3-211ENST00000563297 MDN1Q9NU22 5596 aa6.79□□□□□ -1.32
CLK3-211ENST00000563297 TRAV22A0A0B4J277 110 aa6.77□□□□□ -1.33
CLK3-211ENST00000563297 LOC101927531A0A1B0GV80 90 aa6.77□□□□□ -1.33
CLK3-211ENST00000563297 MP68P56378 58 aa6.77□□□□□ -1.33
CLK3-211ENST00000563297 H0Y9P7 68 aa6.75□□□□□ -1.33
CLK3-211ENST00000563297 COX7CP15954 63 aa6.75□□□□□ -1.33
CLK3-211ENST00000563297 H0YAA0 97 aa6.73□□□□□ -1.33
CLK3-211ENST00000563297 NDUFC1O43677 76 aa6.72□□□□□ -1.33
CLK3-211ENST00000563297 H3BPC8 53 aa6.7□□□□□ -1.34
CLK3-211ENST00000563297 PCP4P48539 62 aa6.7□□□□□ -1.34
CLK3-211ENST00000563297 LINC00208Q96KT6 92 aa6.7□□□□□ -1.34
CLK3-211ENST00000563297 C20orf197Q8N268 126 aa6.69□□□□□ -1.34
CLK3-211ENST00000563297 CCDC179H3BU77 68 aa6.65□□□□□ -1.34
CLK3-211ENST00000563297 KRTAP2-3P0C7H8 128 aa6.65□□□□□ -1.34
CLK3-211ENST00000563297 ADM2Q7Z4H4 148 aa6.65□□□□□ -1.34
CLK3-211ENST00000563297 KRTAP2-4Q9BYR9 128 aa6.65□□□□□ -1.34
CLK3-211ENST00000563297 SNURFQ9Y675 71 aa6.65□□□□□ -1.34
CLK3-211ENST00000563297 A8MUN3 132 aa6.63□□□□□ -1.35
CLK3-211ENST00000563297 MT1XP80297 61 aa6.62□□□□□ -1.35
CLK3-211ENST00000563297 SPRR2FQ96RM1 72 aa6.62□□□□□ -1.35
CLK3-211ENST00000563297 KRTAP3-2Q9BYR7 98 aa6.62□□□□□ -1.35
CLK3-211ENST00000563297 PRO2289Q9P1D8 64 aa6.61□□□□□ -1.35
CLK3-211ENST00000563297 SPRR2EP22531 72 aa6.57□□□□□ -1.36
CLK3-211ENST00000563297 SPRR2BP35325 72 aa6.57□□□□□ -1.36
CLK3-211ENST00000563297 SPRR2AP35326 72 aa6.57□□□□□ -1.36
CLK3-211ENST00000563297 PLAC4Q8WY50 150 aa6.57□□□□□ -1.36
CLK3-211ENST00000563297 KRTAP8-1Q8IUC2 63 aa6.52□□□□□ -1.37
CLK3-211ENST00000563297 KRTAP12-2P59991 146 aa6.5□□□□□ -1.37
CLK3-211ENST00000563297 P0C880 135 aa6.49□□□□□ -1.37
CLK3-211ENST00000563297 CYSTM1Q9H1C7 97 aa6.49□□□□□ -1.37
CLK3-211ENST00000563297 R4GN34 69 aa6.49□□□□□ -1.37
CLK3-211ENST00000563297 H7BZZ5 65 aa6.48□□□□□ -1.37
CLK3-211ENST00000563297 LCE1AQ5T7P2 110 aa6.48□□□□□ -1.37
CLK3-211ENST00000563297 SPANXA2-OT1Q8N9U9 137 aa6.44□□□□□ -1.38
CLK3-211ENST00000563297 KRTAP4-8A0A0G2JLE6 195 aa6.43□□□□□ -1.38
CLK3-211ENST00000563297 M0QZ58 72 aa6.43□□□□□ -1.38
CLK3-211ENST00000563297 KRTAP4-8Q9BYQ9 185 aa6.43□□□□□ -1.38
CLK3-211ENST00000563297 TMEM258P61165 79 aa6.42□□□□□ -1.38
CLK3-211ENST00000563297 KRTAP2-2Q9BYT5 123 aa6.42□□□□□ -1.38
CLK3-211ENST00000563297 KRTAP2-1Q9BYU5 128 aa6.42□□□□□ -1.38
CLK3-211ENST00000563297 ATP5EP56381 51 aaPredicted RBP6.39□□□□□ -1.39
CLK3-211ENST00000563297 ACYP2P14621 99 aa6.37□□□□□ -1.39
CLK3-211ENST00000563297 SPRR2DP22532 72 aa6.35□□□□□ -1.39
CLK3-211ENST00000563297 LINC01554Q52M75 96 aa6.35□□□□□ -1.39
CLK3-211ENST00000563297 DMAC1Q96GE9 116 aa6.35□□□□□ -1.39
CLK3-211ENST00000563297 KRTAP10-7P60409 375 aaPredicted RBP6.32□□□□□ -1.4
CLK3-211ENST00000563297 CHKB-CPT1BH3BT56 60 aa6.29□□□□□ -1.4
CLK3-211ENST00000563297 KRTAP10-12P60413 245 aa6.29□□□□□ -1.4
CLK3-211ENST00000563297 COA5Q86WW8 74 aa6.25□□□□□ -1.41
CLK3-211ENST00000563297 SERP1Q9Y6X1 66 aa6.25□□□□□ -1.41
CLK3-211ENST00000563297 LCE3BQ5TA77 95 aa6.21□□□□□ -1.42
CLK3-211ENST00000563297 SPTSSBQ8NFR3 76 aa6.21□□□□□ -1.42
CLK3-211ENST00000563297 RPS28P62857 69 aaKnown RBP6.17□□□□□ -1.42
CLK3-211ENST00000563297 LOC100996750A0A140TA64 210 aa6.11□□□□□ -1.43
CLK3-211ENST00000563297 KRTAP4-6Q9BYQ5 205 aa6.11□□□□□ -1.43
CLK3-211ENST00000563297 SMIM26A0A096LP01 95 aa6.08□□□□□ -1.44
CLK3-211ENST00000563297 SEC61GP60059 68 aa6.02□□□□□ -1.45
CLK3-211ENST00000563297 V9GYY9 64 aa6.01□□□□□ -1.45
CLK3-211ENST00000563297 KRTAP13-4Q3LI77 160 aa5.98□□□□□ -1.45
CLK3-211ENST00000563297 LINC01558Q9Y6Z2 57 aa5.98□□□□□ -1.45
CLK3-211ENST00000563297 A0A1B0GU69 56 aa5.96□□□□□ -1.46
CLK3-211ENST00000563297 Q1T7F1 81 aa5.96□□□□□ -1.46
CLK3-211ENST00000563297 PRR15LQ9BU68 103 aa5.96□□□□□ -1.46
CLK3-211ENST00000563297 DSTQ03001 7570 aaKnown RBP5.96□□□□□ -1.46
CLK3-211ENST00000563297 KRTAP19-7Q3SYF9 63 aa5.93□□□□□ -1.46
CLK3-211ENST00000563297 LCE5AQ5TCM9 118 aa5.93□□□□□ -1.46
CLK3-211ENST00000563297 CAMK2N1Q7Z7J9 78 aa5.93□□□□□ -1.46
CLK3-211ENST00000563297 PSPHP1O15172 72 aa5.88□□□□□ -1.47
CLK3-211ENST00000563297 MT1EP04732 61 aa5.87□□□□□ -1.47
CLK3-211ENST00000563297 KRTAP19-3Q7Z4W3 81 aa5.87□□□□□ -1.47
CLK3-211ENST00000563297 KRTAP4-9Q9BYQ8 210 aa5.85□□□□□ -1.47
CLK3-211ENST00000563297 A0A1B0GU33 70 aa5.82□□□□□ -1.48
CLK3-211ENST00000563297 A0A0D9SG42 100 aa5.75□□□□□ -1.49
CLK3-211ENST00000563297 UQCR11O14957 56 aa5.75□□□□□ -1.49
CLK3-211ENST00000563297 GPR98Q8WXG9 6306 aa5.75□□□□□ -1.49
CLK3-211ENST00000563297 A6NED7 52 aa5.73□□□□□ -1.49
CLK3-211ENST00000563297 MT1GP13640 62 aa5.72□□□□□ -1.49
CLK3-211ENST00000563297 KRTAP19-5Q3LI72 72 aa5.71□□□□□ -1.5
CLK3-211ENST00000563297 SPATA8Q6RVD6 105 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms