RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 Q75L30 129 aa8.97□□□□□ -0.97
CHMP1A-204ENST00000547687 A8MUU9 505 aa8.96□□□□□ -0.98
CHMP1A-204ENST00000547687 DMAC1Q96GE9 116 aa8.96□□□□□ -0.98
CHMP1A-204ENST00000547687 C20orf166-AS1Q96NR2 134 aa8.96□□□□□ -0.98
CHMP1A-204ENST00000547687 SPTSSBQ8NFR3 76 aa8.93□□□□□ -0.98
CHMP1A-204ENST00000547687 CDC42SE1Q9NRR8 79 aa8.92□□□□□ -0.98
CHMP1A-204ENST00000547687 PRR15LQ9BU68 103 aa8.86□□□□□ -0.99
CHMP1A-204ENST00000547687 LINC01558Q9Y6Z2 57 aa8.84□□□□□ -0.99
CHMP1A-204ENST00000547687 A6NED7 52 aa8.83□□□□□ -1
CHMP1A-204ENST00000547687 TPRXLQ17RH7 258 aa8.81□□□□□ -1
CHMP1A-204ENST00000547687 MUC17Q685J3 4493 aa8.8□□□□□ -1
CHMP1A-204ENST00000547687 XP32Q5T750 250 aa8.78□□□□□ -1
CHMP1A-204ENST00000547687 LINC01554Q52M75 96 aa8.76□□□□□ -1.01
CHMP1A-204ENST00000547687 SPINK7P58062 85 aa8.76□□□□□ -1.01
CHMP1A-204ENST00000547687 RPL37P61927 97 aaKnown RBP8.71□□□□□ -1.01
CHMP1A-204ENST00000547687 FAT4Q6V0I7 4981 aa8.7□□□□□ -1.02
CHMP1A-204ENST00000547687 KRTAP3-1Q9BYR8 98 aa8.64□□□□□ -1.03
CHMP1A-204ENST00000547687 A0A1B0GU69 56 aa8.61□□□□□ -1.03
CHMP1A-204ENST00000547687 KRTAP4-1Q9BYQ7 146 aa8.58□□□□□ -1.04
CHMP1A-204ENST00000547687 COX6B2Q6YFQ2 88 aa8.58□□□□□ -1.04
CHMP1A-204ENST00000547687 PRAC1Q96KF2 57 aa8.57□□□□□ -1.04
CHMP1A-204ENST00000547687 SEC61BP60468 96 aaKnown RBP8.53□□□□□ -1.04
CHMP1A-204ENST00000547687 LCE2AQ5TA79 106 aaPredicted RBP8.47□□□□□ -1.05
CHMP1A-204ENST00000547687 ADM2Q7Z4H4 148 aa8.45□□□□□ -1.06
CHMP1A-204ENST00000547687 UQCR11O14957 56 aa8.4□□□□□ -1.06
CHMP1A-204ENST00000547687 SPATA8Q6RVD6 105 aa8.37□□□□□ -1.07
CHMP1A-204ENST00000547687 MIR22HGQ0VDD5 57 aa8.35□□□□□ -1.07
CHMP1A-204ENST00000547687 KRTAP19-2Q3LHN2 52 aa8.3□□□□□ -1.08
CHMP1A-204ENST00000547687 LCE2CQ5TA81 110 aa8.3□□□□□ -1.08
CHMP1A-204ENST00000547687 KRTAP3-3Q9BYR6 98 aa8.3□□□□□ -1.08
CHMP1A-204ENST00000547687 S4R3F8 94 aa8.29□□□□□ -1.08
CHMP1A-204ENST00000547687 H1FX-AS1Q4G0G2 97 aa8.27□□□□□ -1.09
CHMP1A-204ENST00000547687 CSAG1Q6PB30 78 aa8.27□□□□□ -1.09
CHMP1A-204ENST00000547687 A0A1B0GU33 70 aa8.24□□□□□ -1.09
CHMP1A-204ENST00000547687 KRTAP9-2Q9BYQ4 174 aa8.23□□□□□ -1.09
CHMP1A-204ENST00000547687 MT1HP80294 61 aa8.19□□□□□ -1.1
CHMP1A-204ENST00000547687 FLGP20930 4061 aaPredicted RBP8.19□□□□□ -1.1
CHMP1A-204ENST00000547687 ROMO1P60602 79 aa8.18□□□□□ -1.1
CHMP1A-204ENST00000547687 H0YAA0 97 aa8.17□□□□□ -1.1
CHMP1A-204ENST00000547687 KRTAP10-6P60371 365 aaPredicted RBP8.12□□□□□ -1.11
CHMP1A-204ENST00000547687 KRTAP3-2Q9BYR7 98 aa8.1□□□□□ -1.11
CHMP1A-204ENST00000547687 M0R2T5 61 aa8.06□□□□□ -1.12
CHMP1A-204ENST00000547687 KRTAP25-1Q3LHN0 102 aa8.03□□□□□ -1.12
CHMP1A-204ENST00000547687 FSIP2Q5CZC0 6907 aa8.03□□□□□ -1.12
CHMP1A-204ENST00000547687 P0C880 135 aa8□□□□□ -1.13
CHMP1A-204ENST00000547687 LORP23490 312 aaPredicted RBP8□□□□□ -1.13
CHMP1A-204ENST00000547687 A0A0A0MQY5 61 aa7.98□□□□□ -1.13
CHMP1A-204ENST00000547687 KRTAP13-4Q3LI77 160 aa7.95□□□□□ -1.14
CHMP1A-204ENST00000547687 LCE2DQ5TA82 110 aaPredicted RBP7.95□□□□□ -1.14
CHMP1A-204ENST00000547687 KRTAP9-6A0A140TA67 174 aa7.91□□□□□ -1.14
CHMP1A-204ENST00000547687 K7ERS5 55 aa7.89□□□□□ -1.15
CHMP1A-204ENST00000547687 A0A0D9SG42 100 aa7.87□□□□□ -1.15
CHMP1A-204ENST00000547687 M0QZ58 72 aa7.79□□□□□ -1.16
CHMP1A-204ENST00000547687 CRCT1Q9UGL9 99 aa7.77□□□□□ -1.17
CHMP1A-204ENST00000547687 KRTAP9-8Q9BYQ0 159 aa7.75□□□□□ -1.17
CHMP1A-204ENST00000547687 KRTAP12-2P59991 146 aa7.68□□□□□ -1.18
CHMP1A-204ENST00000547687 MT2AP02795 61 aa7.66□□□□□ -1.18
CHMP1A-204ENST00000547687 KRTAP12-1P59990 96 aa7.66□□□□□ -1.18
CHMP1A-204ENST00000547687 R4GN34 69 aa7.66□□□□□ -1.18
CHMP1A-204ENST00000547687 SPINT4Q6UDR6 99 aa7.66□□□□□ -1.18
CHMP1A-204ENST00000547687 USH2AO75445 5202 aa7.65□□□□□ -1.18
CHMP1A-204ENST00000547687 MT1FP04733 61 aa7.62□□□□□ -1.19
CHMP1A-204ENST00000547687 SSPOA2VEC9 5147 aa7.59□□□□□ -1.19
CHMP1A-204ENST00000547687 NDUFAF8A1L188 74 aa7.57□□□□□ -1.2
CHMP1A-204ENST00000547687 KRTAP10-10P60014 251 aa7.57□□□□□ -1.2
CHMP1A-204ENST00000547687 KRTAP15-1Q3LI76 137 aa7.55□□□□□ -1.2
CHMP1A-204ENST00000547687 KRTAP9-3Q9BYQ3 159 aa7.5□□□□□ -1.21
CHMP1A-204ENST00000547687 LCE2BO14633 110 aa7.49□□□□□ -1.21
CHMP1A-204ENST00000547687 CRIPTQ9P021 101 aa7.49□□□□□ -1.21
CHMP1A-204ENST00000547687 FCGBPQ9Y6R7 5405 aaPredicted RBP7.37□□□□□ -1.23
CHMP1A-204ENST00000547687 LUZP6Q538Z0 58 aa7.35□□□□□ -1.23
CHMP1A-204ENST00000547687 KRTAP19-1Q8IUB9 90 aa7.32□□□□□ -1.24
CHMP1A-204ENST00000547687 C10orf95Q9H7T3 257 aa7.3□□□□□ -1.24
CHMP1A-204ENST00000547687 SPRR2GQ9BYE4 73 aa7.25□□□□□ -1.25
CHMP1A-204ENST00000547687 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.24□□□□□ -1.25
CHMP1A-204ENST00000547687 CAMK2N1Q7Z7J9 78 aa7.23□□□□□ -1.25
CHMP1A-204ENST00000547687 MACF1Q9UPN3 7388 aaKnown RBP7.16□□□□□ -1.26
CHMP1A-204ENST00000547687 KRTAP19-6Q3LI70 58 aa7.15□□□□□ -1.27
CHMP1A-204ENST00000547687 KRTAP9-7A8MTY7 169 aa7.13□□□□□ -1.27
CHMP1A-204ENST00000547687 SYNE2Q8WXH0 6885 aaKnown RBP7.1□□□□□ -1.27
CHMP1A-204ENST00000547687 PLAC4Q8WY50 150 aa7.06□□□□□ -1.28
CHMP1A-204ENST00000547687 KRTAP19-8Q3LI54 63 aa7.05□□□□□ -1.28
CHMP1A-204ENST00000547687 MT1BP07438 61 aa6.99□□□□□ -1.29
CHMP1A-204ENST00000547687 TNP1P09430 55 aa6.93□□□□□ -1.3
CHMP1A-204ENST00000547687 PP632Q6XCG6 107 aa6.91□□□□□ -1.3
CHMP1A-204ENST00000547687 KRTAP23-1A1A580 65 aa6.79□□□□□ -1.32
CHMP1A-204ENST00000547687 KRTAP10-5P60370 271 aa6.78□□□□□ -1.32
CHMP1A-204ENST00000547687 MT1XP80297 61 aa6.77□□□□□ -1.33
CHMP1A-204ENST00000547687 KRTAP6-3Q3LI67 103 aa6.73□□□□□ -1.33
CHMP1A-204ENST00000547687 MUC12Q9UKN1 5478 aa6.69□□□□□ -1.34
CHMP1A-204ENST00000547687 KMT2DO14686 5537 aa6.66□□□□□ -1.34
CHMP1A-204ENST00000547687 PRO2289Q9P1D8 64 aa6.65□□□□□ -1.35
CHMP1A-204ENST00000547687 LCE3AQ5TA76 89 aa6.59□□□□□ -1.36
CHMP1A-204ENST00000547687 NEBP20929 6669 aa6.56□□□□□ -1.36
CHMP1A-204ENST00000547687 KRTAP10-7P60409 375 aaPredicted RBP6.52□□□□□ -1.37
CHMP1A-204ENST00000547687 MDN1Q9NU22 5596 aa6.51□□□□□ -1.37
CHMP1A-204ENST00000547687 KRTAP10-12P60413 245 aa6.47□□□□□ -1.37
CHMP1A-204ENST00000547687 KRTAP5-9P26371 169 aa6.45□□□□□ -1.38
CHMP1A-204ENST00000547687 KRTAP8-1Q8IUC2 63 aa6.44□□□□□ -1.38
CHMP1A-204ENST00000547687 SPRR2FQ96RM1 72 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms