RNA–Protein interactions for RNA: ENST00000540846.6

SMAD3-204, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-204ENST00000540846 RNF213Q63HN8 5207 aa6.4□□□□□ -1.39
SMAD3-204ENST00000540846 LINC01558Q9Y6Z2 57 aa6.4□□□□□ -1.39
SMAD3-204ENST00000540846 MUC2Q02817 5179 aa6.39□□□□□ -1.39
SMAD3-204ENST00000540846 PSPHP1O15172 72 aa6.36□□□□□ -1.39
SMAD3-204ENST00000540846 PRR15LQ9BU68 103 aa6.35□□□□□ -1.39
SMAD3-204ENST00000540846 Q5VV11 94 aa6.34□□□□□ -1.39
SMAD3-204ENST00000540846 SPTSSBQ8NFR3 76 aa6.31□□□□□ -1.4
SMAD3-204ENST00000540846 KRTAP19-2Q3LHN2 52 aa6.31□□□□□ -1.4
SMAD3-204ENST00000540846 A0A1B0GU69 56 aa6.24□□□□□ -1.41
SMAD3-204ENST00000540846 A6NED7 52 aa6.24□□□□□ -1.41
SMAD3-204ENST00000540846 RBM12B-AS1Q9P1G2 102 aa6.24□□□□□ -1.41
SMAD3-204ENST00000540846 H1FX-AS1Q4G0G2 97 aa6.23□□□□□ -1.41
SMAD3-204ENST00000540846 LCE2CQ5TA81 110 aa6.23□□□□□ -1.41
SMAD3-204ENST00000540846 PMAIP1Q13794 54 aa6.22□□□□□ -1.41
SMAD3-204ENST00000540846 LCA10Q71F78 164 aa6.21□□□□□ -1.42
SMAD3-204ENST00000540846 S4R3F8 94 aa6.21□□□□□ -1.42
SMAD3-204ENST00000540846 KRTAP3-3Q9BYR6 98 aa6.2□□□□□ -1.42
SMAD3-204ENST00000540846 CDC42SE1Q9NRR8 79 aa6.2□□□□□ -1.42
SMAD3-204ENST00000540846 FAT4Q6V0I7 4981 aa6.16□□□□□ -1.42
SMAD3-204ENST00000540846 SEC61GP60059 68 aa6.15□□□□□ -1.42
SMAD3-204ENST00000540846 FLGP20930 4061 aaPredicted RBP6.11□□□□□ -1.43
SMAD3-204ENST00000540846 KTN1-AS1Q86SY8 53 aa6.1□□□□□ -1.43
SMAD3-204ENST00000540846 MT1HP80294 61 aa6.09□□□□□ -1.43
SMAD3-204ENST00000540846 A8MU10 97 aa6.07□□□□□ -1.44
SMAD3-204ENST00000540846 UQCR11O14957 56 aa6.07□□□□□ -1.44
SMAD3-204ENST00000540846 LCE2AQ5TA79 106 aaPredicted RBP6.06□□□□□ -1.44
SMAD3-204ENST00000540846 CSAG1Q6PB30 78 aa6.04□□□□□ -1.44
SMAD3-204ENST00000540846 SPATA8Q6RVD6 105 aa6.03□□□□□ -1.44
SMAD3-204ENST00000540846 MIR22HGQ0VDD5 57 aa6.02□□□□□ -1.45
SMAD3-204ENST00000540846 KRTAP3-2Q9BYR7 98 aa6.02□□□□□ -1.45
SMAD3-204ENST00000540846 A0A1B0GU33 70 aa6.01□□□□□ -1.45
SMAD3-204ENST00000540846 KRTAP10-6P60371 365 aaPredicted RBP6.01□□□□□ -1.45
SMAD3-204ENST00000540846 A6NN06 94 aa5.99□□□□□ -1.45
SMAD3-204ENST00000540846 H0YAA0 97 aa5.97□□□□□ -1.45
SMAD3-204ENST00000540846 ADM2Q7Z4H4 148 aa5.94□□□□□ -1.46
SMAD3-204ENST00000540846 P0C880 135 aa5.93□□□□□ -1.46
SMAD3-204ENST00000540846 M0R2T5 61 aa5.9□□□□□ -1.46
SMAD3-204ENST00000540846 LORP23490 312 aaPredicted RBP5.89□□□□□ -1.47
SMAD3-204ENST00000540846 KRTAP13-4Q3LI77 160 aa5.87□□□□□ -1.47
SMAD3-204ENST00000540846 KRTAP9-8Q9BYQ0 159 aa5.84□□□□□ -1.47
SMAD3-204ENST00000540846 M0QZ58 72 aa5.8□□□□□ -1.48
SMAD3-204ENST00000540846 MT2AP02795 61 aa5.8□□□□□ -1.48
SMAD3-204ENST00000540846 MT1FP04733 61 aa5.76□□□□□ -1.49
SMAD3-204ENST00000540846 A0A0D9SG42 100 aa5.73□□□□□ -1.49
SMAD3-204ENST00000540846 K7ERS5 55 aa5.73□□□□□ -1.49
SMAD3-204ENST00000540846 R4GN34 69 aa5.72□□□□□ -1.49
SMAD3-204ENST00000540846 KRTAP10-10P60014 251 aa5.67□□□□□ -1.5
SMAD3-204ENST00000540846 KRTAP12-1P59990 96 aa5.66□□□□□ -1.5
SMAD3-204ENST00000540846 CRIPTQ9P021 101 aa5.65□□□□□ -1.5
SMAD3-204ENST00000540846 KRTAP12-2P59991 146 aa5.64□□□□□ -1.51
SMAD3-204ENST00000540846 KRTAP9-3Q9BYQ3 159 aa5.64□□□□□ -1.51
SMAD3-204ENST00000540846 LINC01554Q52M75 96 aa5.62□□□□□ -1.51
SMAD3-204ENST00000540846 PRAC1Q96KF2 57 aa5.59□□□□□ -1.51
SMAD3-204ENST00000540846 LCE2DQ5TA82 110 aaPredicted RBP5.59□□□□□ -1.52
SMAD3-204ENST00000540846 SPINT4Q6UDR6 99 aa5.59□□□□□ -1.52
SMAD3-204ENST00000540846 KRTAP19-1Q8IUB9 90 aa5.59□□□□□ -1.52
SMAD3-204ENST00000540846 SPRR2GQ9BYE4 73 aa5.56□□□□□ -1.52
SMAD3-204ENST00000540846 LCE2BO14633 110 aa5.53□□□□□ -1.52
SMAD3-204ENST00000540846 KRTAP9-2Q9BYQ4 174 aa5.52□□□□□ -1.53
SMAD3-204ENST00000540846 ROMO1P60602 79 aa5.51□□□□□ -1.53
SMAD3-204ENST00000540846 KRTAP25-1Q3LHN0 102 aa5.46□□□□□ -1.54
SMAD3-204ENST00000540846 KRTAP19-8Q3LI54 63 aa5.46□□□□□ -1.54
SMAD3-204ENST00000540846 MT1BP07438 61 aa5.42□□□□□ -1.54
SMAD3-204ENST00000540846 USH2AO75445 5202 aa5.41□□□□□ -1.54
SMAD3-204ENST00000540846 CAMK2N1Q7Z7J9 78 aa5.37□□□□□ -1.55
SMAD3-204ENST00000540846 C10orf95Q9H7T3 257 aa5.33□□□□□ -1.56
SMAD3-204ENST00000540846 FSIP2Q5CZC0 6907 aa5.31□□□□□ -1.56
SMAD3-204ENST00000540846 PLAC4Q8WY50 150 aa5.31□□□□□ -1.56
SMAD3-204ENST00000540846 SSPOA2VEC9 5147 aa5.28□□□□□ -1.56
SMAD3-204ENST00000540846 CRCT1Q9UGL9 99 aa5.27□□□□□ -1.57
SMAD3-204ENST00000540846 KRTAP9-6A0A140TA67 174 aa5.25□□□□□ -1.57
SMAD3-204ENST00000540846 KRTAP19-6Q3LI70 58 aa5.24□□□□□ -1.57
SMAD3-204ENST00000540846 MT1XP80297 61 aa5.18□□□□□ -1.58
SMAD3-204ENST00000540846 KRTAP10-5P60370 271 aa5.16□□□□□ -1.58
SMAD3-204ENST00000540846 TNP1P09430 55 aa5.13□□□□□ -1.59
SMAD3-204ENST00000540846 FCGBPQ9Y6R7 5405 aaPredicted RBP5.11□□□□□ -1.59
SMAD3-204ENST00000540846 PP632Q6XCG6 107 aa5.08□□□□□ -1.6
SMAD3-204ENST00000540846 PRO2289Q9P1D8 64 aa5.06□□□□□ -1.6
SMAD3-204ENST00000540846 KRTAP23-1A1A580 65 aa5.05□□□□□ -1.6
SMAD3-204ENST00000540846 H3BS24 57 aa5.04□□□□□ -1.6
SMAD3-204ENST00000540846 KRTAP10-7P60409 375 aaPredicted RBP4.95□□□□□ -1.62
SMAD3-204ENST00000540846 KRTAP10-12P60413 245 aa4.91□□□□□ -1.62
SMAD3-204ENST00000540846 KRTAP15-1Q3LI76 137 aa4.91□□□□□ -1.62
SMAD3-204ENST00000540846 LCE3AQ5TA76 89 aa4.91□□□□□ -1.62
SMAD3-204ENST00000540846 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.9□□□□□ -1.63
SMAD3-204ENST00000540846 MACF1Q9UPN3 7388 aaKnown RBP4.85□□□□□ -1.63
SMAD3-204ENST00000540846 KRTAP8-1Q8IUC2 63 aa4.83□□□□□ -1.64
SMAD3-204ENST00000540846 KRTAP4-8A0A0G2JLE6 195 aa4.82□□□□□ -1.64
SMAD3-204ENST00000540846 KRTAP4-8Q9BYQ9 185 aa4.82□□□□□ -1.64
SMAD3-204ENST00000540846 KMT2DO14686 5537 aa4.8□□□□□ -1.64
SMAD3-204ENST00000540846 NDUFAF8A1L188 74 aa4.78□□□□□ -1.64
SMAD3-204ENST00000540846 KRTAP9-7A8MTY7 169 aa4.74□□□□□ -1.65
SMAD3-204ENST00000540846 LUZP6Q538Z0 58 aa4.73□□□□□ -1.65
SMAD3-204ENST00000540846 SYNE2Q8WXH0 6885 aaKnown RBP4.72□□□□□ -1.65
SMAD3-204ENST00000540846 KRTAP12-3P60328 96 aa4.71□□□□□ -1.66
SMAD3-204ENST00000540846 KRTAP6-3Q3LI67 103 aa4.7□□□□□ -1.66
SMAD3-204ENST00000540846 KRTAP5-9P26371 169 aa4.67□□□□□ -1.66
SMAD3-204ENST00000540846 KRTAP19-5Q3LI72 72 aa4.64□□□□□ -1.67
SMAD3-204ENST00000540846 KRTAP19-7Q3SYF9 63 aa4.63□□□□□ -1.67
SMAD3-204ENST00000540846 SPRR2FQ96RM1 72 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms