RNA–Protein interactions for RNA: ENST00000496298.5

USP40-217, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 665 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-217ENST00000496298 KRTAP4-8A0A0G2JLE6 195 aa8.9□□□□□ -0.98
USP40-217ENST00000496298 S4R3F8 94 aa8.9□□□□□ -0.98
USP40-217ENST00000496298 CSAG1Q6PB30 78 aa8.87□□□□□ -0.99
USP40-217ENST00000496298 LCA10Q71F78 164 aa8.86□□□□□ -0.99
USP40-217ENST00000496298 SYNE2Q8WXH0 6885 aaKnown RBP8.84□□□□□ -0.99
USP40-217ENST00000496298 CYP4F30PQ9H0H9 118 aa8.83□□□□□ -1
USP40-217ENST00000496298 FAM236AA0A1B0GUQ0 79 aa8.8□□□□□ -1
USP40-217ENST00000496298 FAM236BA0A1B0GV22 79 aa8.8□□□□□ -1
USP40-217ENST00000496298 PCP4P48539 62 aa8.79□□□□□ -1
USP40-217ENST00000496298 TRAV22A0A0B4J277 110 aa8.77□□□□□ -1.01
USP40-217ENST00000496298 SPRR2GQ9BYE4 73 aa8.76□□□□□ -1.01
USP40-217ENST00000496298 LOC101927531A0A1B0GV80 90 aa8.75□□□□□ -1.01
USP40-217ENST00000496298 MT1BP07438 61 aa8.73□□□□□ -1.01
USP40-217ENST00000496298 HIST1H4AP62805 103 aaKnown RBP8.73□□□□□ -1.01
USP40-217ENST00000496298 KRTAP19-8Q3LI54 63 aa8.73□□□□□ -1.01
USP40-217ENST00000496298 A0A087WVE0 104 aa8.68□□□□□ -1.02
USP40-217ENST00000496298 ATOX1O00244 68 aa8.68□□□□□ -1.02
USP40-217ENST00000496298 KLKP1Q107X0 134 aa8.68□□□□□ -1.02
USP40-217ENST00000496298 KRTAP6-3Q3LI67 103 aa8.68□□□□□ -1.02
USP40-217ENST00000496298 Q5VV11 94 aa8.68□□□□□ -1.02
USP40-217ENST00000496298 ANAPC13Q9BS18 74 aa8.68□□□□□ -1.02
USP40-217ENST00000496298 UQCRQO14949 82 aa8.67□□□□□ -1.02
USP40-217ENST00000496298 SMIM20Q8N5G0 67 aa8.63□□□□□ -1.03
USP40-217ENST00000496298 KRTAP4-7Q9BYR0 210 aa8.62□□□□□ -1.03
USP40-217ENST00000496298 H0Y9P7 68 aa8.61□□□□□ -1.03
USP40-217ENST00000496298 A6NN06 94 aa8.6□□□□□ -1.03
USP40-217ENST00000496298 CRIPTQ9P021 101 aa8.59□□□□□ -1.03
USP40-217ENST00000496298 SERP2Q8N6R1 65 aa8.55□□□□□ -1.04
USP40-217ENST00000496298 KRTAP10-5P60370 271 aa8.54□□□□□ -1.04
USP40-217ENST00000496298 H0YAA0 97 aa8.53□□□□□ -1.04
USP40-217ENST00000496298 NDUFC1O43677 76 aa8.52□□□□□ -1.05
USP40-217ENST00000496298 TRAV7A0A075B6U4 112 aa8.51□□□□□ -1.05
USP40-217ENST00000496298 A8MUN3 132 aa8.51□□□□□ -1.05
USP40-217ENST00000496298 COX7CP15954 63 aa8.51□□□□□ -1.05
USP40-217ENST00000496298 LINC00208Q96KT6 92 aa8.47□□□□□ -1.05
USP40-217ENST00000496298 OCR1Q9BZK8 76 aa8.47□□□□□ -1.05
USP40-217ENST00000496298 LCE1DQ5T752 114 aa8.44□□□□□ -1.06
USP40-217ENST00000496298 CCDC179H3BU77 68 aa8.41□□□□□ -1.06
USP40-217ENST00000496298 MP68P56378 58 aa8.41□□□□□ -1.06
USP40-217ENST00000496298 ADM2Q7Z4H4 148 aa8.36□□□□□ -1.07
USP40-217ENST00000496298 NEBP20929 6669 aa8.35□□□□□ -1.07
USP40-217ENST00000496298 MUC12Q9UKN1 5478 aa8.34□□□□□ -1.07
USP40-217ENST00000496298 H3BPC8 53 aa8.33□□□□□ -1.08
USP40-217ENST00000496298 C20orf197Q8N268 126 aa8.3□□□□□ -1.08
USP40-217ENST00000496298 KRTAP4-9Q9BYQ8 210 aa8.3□□□□□ -1.08
USP40-217ENST00000496298 KRTAP4-2Q9BYR5 136 aa8.3□□□□□ -1.08
USP40-217ENST00000496298 KRTAP5-9P26371 169 aa8.28□□□□□ -1.08
USP40-217ENST00000496298 KRTAP19-4Q3LI73 84 aa8.26□□□□□ -1.09
USP40-217ENST00000496298 DMAC1Q96GE9 116 aa8.25□□□□□ -1.09
USP40-217ENST00000496298 TMEM258P61165 79 aa8.22□□□□□ -1.09
USP40-217ENST00000496298 KMT2DO14686 5537 aa8.2□□□□□ -1.1
USP40-217ENST00000496298 P0C880 135 aa8.19□□□□□ -1.1
USP40-217ENST00000496298 SNURFQ9Y675 71 aa8.19□□□□□ -1.1
USP40-217ENST00000496298 MT1XP80297 61 aa8.16□□□□□ -1.1
USP40-217ENST00000496298 PRO2289Q9P1D8 64 aa8.16□□□□□ -1.1
USP40-217ENST00000496298 H7BZZ5 65 aa8.15□□□□□ -1.1
USP40-217ENST00000496298 ATP5EP56381 51 aaPredicted RBP8.15□□□□□ -1.1
USP40-217ENST00000496298 R4GN34 69 aa8.15□□□□□ -1.1
USP40-217ENST00000496298 MDN1Q9NU22 5596 aa8.15□□□□□ -1.1
USP40-217ENST00000496298 PLAC4Q8WY50 150 aa8.14□□□□□ -1.11
USP40-217ENST00000496298 CYSTM1Q9H1C7 97 aa8.12□□□□□ -1.11
USP40-217ENST00000496298 M0QZ58 72 aa8.08□□□□□ -1.12
USP40-217ENST00000496298 RPS28P62857 69 aaKnown RBP8.03□□□□□ -1.12
USP40-217ENST00000496298 SPANXA2-OT1Q8N9U9 137 aa8.03□□□□□ -1.12
USP40-217ENST00000496298 ACYP2P14621 99 aa8.02□□□□□ -1.13
USP40-217ENST00000496298 KRTAP12-2P59991 146 aa8.01□□□□□ -1.13
USP40-217ENST00000496298 KRTAP20-1Q3LI63 56 aa8.01□□□□□ -1.13
USP40-217ENST00000496298 LCE4AQ5TA78 99 aa7.98□□□□□ -1.13
USP40-217ENST00000496298 SERP1Q9Y6X1 66 aa7.97□□□□□ -1.13
USP40-217ENST00000496298 SPRR2FQ96RM1 72 aa7.94□□□□□ -1.14
USP40-217ENST00000496298 LINC01554Q52M75 96 aa7.93□□□□□ -1.14
USP40-217ENST00000496298 SPTSSBQ8NFR3 76 aa7.92□□□□□ -1.14
USP40-217ENST00000496298 KRTAP8-1Q8IUC2 63 aa7.91□□□□□ -1.14
USP40-217ENST00000496298 KRTAP4-11Q9BYQ6 195 aa7.91□□□□□ -1.14
USP40-217ENST00000496298 SPRR2EP22531 72 aa7.84□□□□□ -1.15
USP40-217ENST00000496298 SPRR2BP35325 72 aa7.84□□□□□ -1.15
USP40-217ENST00000496298 SPRR2AP35326 72 aa7.84□□□□□ -1.15
USP40-217ENST00000496298 KRTAP2-3P0C7H8 128 aa7.83□□□□□ -1.16
USP40-217ENST00000496298 KRTAP2-4Q9BYR9 128 aa7.83□□□□□ -1.16
USP40-217ENST00000496298 CHKB-CPT1BH3BT56 60 aa7.82□□□□□ -1.16
USP40-217ENST00000496298 KRTAP5-3Q6L8H2 238 aa7.81□□□□□ -1.16
USP40-217ENST00000496298 SMIM26A0A096LP01 95 aa7.78□□□□□ -1.16
USP40-217ENST00000496298 LCE1AQ5T7P2 110 aa7.78□□□□□ -1.16
USP40-217ENST00000496298 KRTAP10-7P60409 375 aaPredicted RBP7.77□□□□□ -1.17
USP40-217ENST00000496298 KRTAP10-12P60413 245 aa7.77□□□□□ -1.17
USP40-217ENST00000496298 COA5Q86WW8 74 aa7.71□□□□□ -1.18
USP40-217ENST00000496298 V9GYY9 64 aa7.67□□□□□ -1.18
USP40-217ENST00000496298 KRTAP13-4Q3LI77 160 aa7.63□□□□□ -1.19
USP40-217ENST00000496298 Q1T7F1 81 aa7.6□□□□□ -1.19
USP40-217ENST00000496298 SPRR2DP22532 72 aa7.58□□□□□ -1.2
USP40-217ENST00000496298 KRTAP2-2Q9BYT5 123 aa7.58□□□□□ -1.2
USP40-217ENST00000496298 KRTAP2-1Q9BYU5 128 aa7.58□□□□□ -1.2
USP40-217ENST00000496298 LINC01558Q9Y6Z2 57 aa7.48□□□□□ -1.21
USP40-217ENST00000496298 KRTAP23-1A1A580 65 aa7.47□□□□□ -1.21
USP40-217ENST00000496298 LCE5AQ5TCM9 118 aa7.47□□□□□ -1.21
USP40-217ENST00000496298 CAMK2N1Q7Z7J9 78 aa7.47□□□□□ -1.21
USP40-217ENST00000496298 PRR15LQ9BU68 103 aa7.42□□□□□ -1.22
USP40-217ENST00000496298 SEC61GP60059 68 aa7.4□□□□□ -1.22
USP40-217ENST00000496298 PSPHP1O15172 72 aa7.36□□□□□ -1.23
USP40-217ENST00000496298 A0A1B0GU69 56 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms