RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-231	ENST00000488905	IMUP	Q9GZP8	106 aa		8.03	□□□□□ -1.12
HDAC6-231	ENST00000488905	CRIPT	Q9P021	101 aa		8.03	□□□□□ -1.12
HDAC6-231	ENST00000488905	CYP4F30P	Q9H0H9	118 aa		7.98	□□□□□ -1.13
HDAC6-231	ENST00000488905		A0A087WVE0	104 aa		7.97	□□□□□ -1.13
HDAC6-231	ENST00000488905	GTF2H5	Q6ZYL4	71 aa		7.97	□□□□□ -1.13
HDAC6-231	ENST00000488905		F8W1H4	67 aa		7.94	□□□□□ -1.14
HDAC6-231	ENST00000488905	TRAV22	A0A0B4J277	110 aa		7.9	□□□□□ -1.14
HDAC6-231	ENST00000488905	LOC101927531	A0A1B0GV80	90 aa		7.89	□□□□□ -1.15
HDAC6-231	ENST00000488905		H0YAA0	97 aa		7.86	□□□□□ -1.15
HDAC6-231	ENST00000488905	ETDB	Q3ZM63	59 aa		7.86	□□□□□ -1.15
HDAC6-231	ENST00000488905	PCP4L1	A6NKN8	68 aa		7.84	□□□□□ -1.15
HDAC6-231	ENST00000488905	NDUFC1	O43677	76 aa		7.83	□□□□□ -1.16
HDAC6-231	ENST00000488905	KRTAP2-3	P0C7H8	128 aa		7.82	□□□□□ -1.16
HDAC6-231	ENST00000488905	KRTAP2-4	Q9BYR9	128 aa		7.82	□□□□□ -1.16
HDAC6-231	ENST00000488905	SPRR2F	Q96RM1	72 aa		7.81	□□□□□ -1.16
HDAC6-231	ENST00000488905	PRO2289	Q9P1D8	64 aa		7.79	□□□□□ -1.16
HDAC6-231	ENST00000488905		A8MUN3	132 aa		7.78	□□□□□ -1.16
HDAC6-231	ENST00000488905	SPRR2E	P22531	72 aa		7.77	□□□□□ -1.17
HDAC6-231	ENST00000488905	SPRR2B	P35325	72 aa		7.77	□□□□□ -1.17
HDAC6-231	ENST00000488905	SPRR2A	P35326	72 aa		7.77	□□□□□ -1.17
HDAC6-231	ENST00000488905	MT1X	P80297	61 aa		7.76	□□□□□ -1.17
HDAC6-231	ENST00000488905	ADM2	Q7Z4H4	148 aa		7.76	□□□□□ -1.17
HDAC6-231	ENST00000488905	ACYP1	P07311	99 aa		7.75	□□□□□ -1.17
HDAC6-231	ENST00000488905		H0Y9P7	68 aa		7.73	□□□□□ -1.17
HDAC6-231	ENST00000488905	ATOX1	O00244	68 aa		7.72	□□□□□ -1.17
HDAC6-231	ENST00000488905	UQCRQ	O14949	82 aa		7.71	□□□□□ -1.18
HDAC6-231	ENST00000488905	FAM240A	A0A1B0GVK7	77 aa		7.69	□□□□□ -1.18
HDAC6-231	ENST00000488905	KRTAP8-1	Q8IUC2	63 aa		7.68	□□□□□ -1.18
HDAC6-231	ENST00000488905	ATP5EP2	Q5VTU8	51 aa		7.67	□□□□□ -1.18
HDAC6-231	ENST00000488905	PLAC4	Q8WY50	150 aa		7.67	□□□□□ -1.18
HDAC6-231	ENST00000488905	HIST1H4A	P62805	103 aa	Known RBP	7.64	□□□□□ -1.19
HDAC6-231	ENST00000488905	KRTAP12-2	P59991	146 aa		7.63	□□□□□ -1.19
HDAC6-231	ENST00000488905	KRTAP4-8	Q9BYQ9	185 aa		7.63	□□□□□ -1.19
HDAC6-231	ENST00000488905	LCE1A	Q5T7P2	110 aa		7.62	□□□□□ -1.19
HDAC6-231	ENST00000488905		R4GN34	69 aa		7.6	□□□□□ -1.19
HDAC6-231	ENST00000488905	LINC00208	Q96KT6	92 aa		7.56	□□□□□ -1.2
HDAC6-231	ENST00000488905	KRTAP2-2	Q9BYT5	123 aa		7.56	□□□□□ -1.2
HDAC6-231	ENST00000488905	KRTAP2-1	Q9BYU5	128 aa		7.56	□□□□□ -1.2
HDAC6-231	ENST00000488905		P0C880	135 aa		7.55	□□□□□ -1.2
HDAC6-231	ENST00000488905	LINC00643	Q86TS7	51 aa		7.54	□□□□□ -1.2
HDAC6-231	ENST00000488905	C20orf197	Q8N268	126 aa		7.53	□□□□□ -1.2
HDAC6-231	ENST00000488905		M0QZ58	72 aa		7.52	□□□□□ -1.21
HDAC6-231	ENST00000488905	SPRR2D	P22532	72 aa		7.51	□□□□□ -1.21
HDAC6-231	ENST00000488905	KRTAP4-8	A0A0G2JLE6	195 aa		7.49	□□□□□ -1.21
HDAC6-231	ENST00000488905	MP68	P56378	58 aa		7.48	□□□□□ -1.21
HDAC6-231	ENST00000488905	OCR1	Q9BZK8	76 aa		7.45	□□□□□ -1.22
HDAC6-231	ENST00000488905	LINC01554	Q52M75	96 aa		7.43	□□□□□ -1.22
HDAC6-231	ENST00000488905		A0A1B0GV90	55 aa		7.42	□□□□□ -1.22
HDAC6-231	ENST00000488905	KRTAP10-7	P60409	375 aa	Predicted RBP	7.39	□□□□□ -1.23
HDAC6-231	ENST00000488905	DMAC1	Q96GE9	116 aa		7.39	□□□□□ -1.23
HDAC6-231	ENST00000488905	KRTAP10-12	P60413	245 aa		7.36	□□□□□ -1.23
HDAC6-231	ENST00000488905		J3QR89	54 aa		7.35	□□□□□ -1.23
HDAC6-231	ENST00000488905	LCE3B	Q5TA77	95 aa		7.33	□□□□□ -1.24
HDAC6-231	ENST00000488905		H3BPC8	53 aa		7.32	□□□□□ -1.24
HDAC6-231	ENST00000488905	KRTAP4-12	Q9BQ66	201 aa		7.26	□□□□□ -1.25
HDAC6-231	ENST00000488905	SCGB1A1	P11684	91 aa		7.23	□□□□□ -1.25
HDAC6-231	ENST00000488905	MT-ATP8	P03928	68 aa		7.22	□□□□□ -1.25
HDAC6-231	ENST00000488905	TRAV7	A0A075B6U4	112 aa		7.21	□□□□□ -1.26
HDAC6-231	ENST00000488905	KRTAP9-9	Q9BYP9	154 aa		7.16	□□□□□ -1.26
HDAC6-231	ENST00000488905	KRTAP9-4	Q9BYQ2	154 aa		7.16	□□□□□ -1.26
HDAC6-231	ENST00000488905	ACYP2	P14621	99 aa		7.12	□□□□□ -1.27
HDAC6-231	ENST00000488905	SPTSSB	Q8NFR3	76 aa		7.11	□□□□□ -1.27
HDAC6-231	ENST00000488905	SMIM20	Q8N5G0	67 aa		7.07	□□□□□ -1.28
HDAC6-231	ENST00000488905		K7ERU9	68 aa		7.05	□□□□□ -1.28
HDAC6-231	ENST00000488905	GPR98	Q8WXG9	6306 aa		7.03	□□□□□ -1.28
HDAC6-231	ENST00000488905	DST	Q03001	7570 aa	Known RBP	7.02	□□□□□ -1.29
HDAC6-231	ENST00000488905	CHKB-CPT1B	H3BT56	60 aa		7	□□□□□ -1.29
HDAC6-231	ENST00000488905	LCE5A	Q5TCM9	118 aa		6.95	□□□□□ -1.3
HDAC6-231	ENST00000488905	KRTAP13-4	Q3LI77	160 aa		6.94	□□□□□ -1.3
HDAC6-231	ENST00000488905	KRTAP19-7	Q3SYF9	63 aa		6.93	□□□□□ -1.3
HDAC6-231	ENST00000488905	CAMK2N1	Q7Z7J9	78 aa		6.93	□□□□□ -1.3
HDAC6-231	ENST00000488905	MT1E	P04732	61 aa		6.9	□□□□□ -1.3
HDAC6-231	ENST00000488905	KRTAP19-3	Q7Z4W3	81 aa		6.9	□□□□□ -1.3
HDAC6-231	ENST00000488905	KRTAP4-9	Q9BYQ8	210 aa		6.88	□□□□□ -1.31
HDAC6-231	ENST00000488905	SPANXA2-OT1	Q8N9U9	137 aa		6.83	□□□□□ -1.32
HDAC6-231	ENST00000488905	SNURF	Q9Y675	71 aa		6.83	□□□□□ -1.32
HDAC6-231	ENST00000488905	SERP2	Q8N6R1	65 aa		6.79	□□□□□ -1.32
HDAC6-231	ENST00000488905	KRTAP4-7	Q9BYR0	210 aa		6.78	□□□□□ -1.32
HDAC6-231	ENST00000488905	CYSTM1	Q9H1C7	97 aa		6.75	□□□□□ -1.33
HDAC6-231	ENST00000488905	LCE1D	Q5T752	114 aa		6.74	□□□□□ -1.33
HDAC6-231	ENST00000488905	HMCN1	Q96RW7	5635 aa		6.7	□□□□□ -1.34
HDAC6-231	ENST00000488905		A0A0D9SG42	100 aa		6.7	□□□□□ -1.34
HDAC6-231	ENST00000488905	MT1G	P13640	62 aa		6.67	□□□□□ -1.34
HDAC6-231	ENST00000488905	KRTAP19-5	Q3LI72	72 aa		6.67	□□□□□ -1.34
HDAC6-231	ENST00000488905	PP632	Q6XCG6	107 aa		6.64	□□□□□ -1.35
HDAC6-231	ENST00000488905	LCE4A	Q5TA78	99 aa		6.61	□□□□□ -1.35
HDAC6-231	ENST00000488905	SPATA8	Q6RVD6	105 aa		6.6	□□□□□ -1.35
HDAC6-231	ENST00000488905	SPINT4	Q6UDR6	99 aa		6.6	□□□□□ -1.35
HDAC6-231	ENST00000488905	COA5	Q86WW8	74 aa		6.6	□□□□□ -1.35
HDAC6-231	ENST00000488905	MT4	P47944	62 aa		6.59	□□□□□ -1.35
HDAC6-231	ENST00000488905	AHNAK2	Q8IVF2	5795 aa		6.58	□□□□□ -1.36
HDAC6-231	ENST00000488905	SEC61G	P60059	68 aa		6.58	□□□□□ -1.36
HDAC6-231	ENST00000488905	MT1M	Q8N339	61 aa		6.58	□□□□□ -1.36
HDAC6-231	ENST00000488905	SERP1	Q9Y6X1	66 aa		6.58	□□□□□ -1.36
HDAC6-231	ENST00000488905	COX7C	P15954	63 aa		6.57	□□□□□ -1.36
HDAC6-231	ENST00000488905	KRTAP12-1	P59990	96 aa		6.54	□□□□□ -1.36
HDAC6-231	ENST00000488905	MT1L	Q93083	61 aa		6.54	□□□□□ -1.36
HDAC6-231	ENST00000488905	KRTAP4-2	Q9BYR5	136 aa		6.54	□□□□□ -1.36
HDAC6-231	ENST00000488905		A0A1B0GU33	70 aa		6.5	□□□□□ -1.37
HDAC6-231	ENST00000488905		H7BZZ5	65 aa		6.46	□□□□□ -1.38

Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms