RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 ZANQ9Y493 2812 aa1.12□□□□□ -2.23
USP48-209ENST00000487880 EPG5Q9HCE0 2579 aa1.12□□□□□ -2.23
USP48-209ENST00000487880 CHD8Q9HCK8 2581 aa1.12□□□□□ -2.23
USP48-209ENST00000487880 FBN2P35556 2912 aa1.12□□□□□ -2.23
USP48-209ENST00000487880 PIEZO1Q92508 2521 aa1.11□□□□□ -2.23
USP48-209ENST00000487880 NIPBLQ6KC79 2804 aaeCLIP1.11□□□□□ -2.23
USP48-209ENST00000487880 KRTAP5-10Q6L8G5 202 aa1.11□□□□□ -2.23
USP48-209ENST00000487880 S4R3F8 94 aa1.11□□□□□ -2.23
USP48-209ENST00000487880 NOTCH1P46531 2555 aa1.11□□□□□ -2.23
USP48-209ENST00000487880 TTC28Q96AY4 2481 aa1.11□□□□□ -2.23
USP48-209ENST00000487880 ANK3Q12955 4377 aaKnown RBP1.11□□□□□ -2.23
USP48-209ENST00000487880 LRRK2Q5S007 2527 aa1.11□□□□□ -2.23
USP48-209ENST00000487880 CENPEQ02224 2701 aa1.1□□□□□ -2.23
USP48-209ENST00000487880 TRRAPQ9Y4A5 3859 aa1.1□□□□□ -2.23
USP48-209ENST00000487880 M0QZ58 72 aa1.1□□□□□ -2.23
USP48-209ENST00000487880 UBE2DNLQ8IWF7 75 aa1.1□□□□□ -2.23
USP48-209ENST00000487880 APLNQ9ULZ1 77 aa1.1□□□□□ -2.23
USP48-209ENST00000487880 CFAP46Q8IYW2 2715 aa1.1□□□□□ -2.23
USP48-209ENST00000487880 SRRM2Q9UQ35 2752 aaKnown RBP1.1□□□□□ -2.23
USP48-209ENST00000487880 VPS13DQ5THJ4 4388 aa1.1□□□□□ -2.23
USP48-209ENST00000487880 TENM4Q6N022 2769 aa1.09□□□□□ -2.23
USP48-209ENST00000487880 FRAS1Q86XX4 4008 aa1.09□□□□□ -2.23
USP48-209ENST00000487880 ACACBO00763 2458 aa1.09□□□□□ -2.23
USP48-209ENST00000487880 HIVEP1P15822 2718 aa1.09□□□□□ -2.23
USP48-209ENST00000487880 C10orf95Q9H7T3 257 aa1.09□□□□□ -2.23
USP48-209ENST00000487880 DNAH3Q8TD57 4116 aa1.09□□□□□ -2.24
USP48-209ENST00000487880 CSMD2Q7Z408 3487 aa1.09□□□□□ -2.24
USP48-209ENST00000487880 MUC3AQ02505 3323 aa1.09□□□□□ -2.24
USP48-209ENST00000487880 ACANP16112 2415 aa1.08□□□□□ -2.24
USP48-209ENST00000487880 MEGF8Q7Z7M0 2845 aa1.08□□□□□ -2.24
USP48-209ENST00000487880 TEP1Q99973 2627 aaKnown RBP1.07□□□□□ -2.24
USP48-209ENST00000487880 INE1O15225 51 aa1.07□□□□□ -2.24
USP48-209ENST00000487880 VWFP04275 2813 aa1.07□□□□□ -2.24
USP48-209ENST00000487880 ABCA12Q86UK0 2595 aa1.07□□□□□ -2.24
USP48-209ENST00000487880 ITPR3Q14573 2671 aa1.07□□□□□ -2.24
USP48-209ENST00000487880 ANK2Q01484 3957 aa1.06□□□□□ -2.24
USP48-209ENST00000487880 SETD2Q9BYW2 2564 aaPredicted RBP1.06□□□□□ -2.24
USP48-209ENST00000487880 HECTD1Q9ULT8 2610 aa1.06□□□□□ -2.24
USP48-209ENST00000487880 CCDC168Q8NDH2 2452 aa1.06□□□□□ -2.24
USP48-209ENST00000487880 PDZD2O15018 2839 aa1.06□□□□□ -2.24
USP48-209ENST00000487880 DNAH17Q9UFH2 4485 aa1.06□□□□□ -2.24
USP48-209ENST00000487880 MUC16Q8WXI7 14507 aa1.06□□□□□ -2.24
USP48-209ENST00000487880 PKD1L1Q8TDX9 2849 aa1.06□□□□□ -2.24
USP48-209ENST00000487880 POLQO75417 2590 aa1.05□□□□□ -2.24
USP48-209ENST00000487880 LYSTQ99698 3801 aa1.05□□□□□ -2.24
USP48-209ENST00000487880 DNAH7Q8WXX0 4024 aa1.05□□□□□ -2.24
USP48-209ENST00000487880 FASNP49327 2511 aaKnown RBP1.05□□□□□ -2.24
USP48-209ENST00000487880 A0A0D9SG42 100 aa1.05□□□□□ -2.24
USP48-209ENST00000487880 MYO18BQ8IUG5 2567 aa1.05□□□□□ -2.24
USP48-209ENST00000487880 FLNAP21333 2647 aaKnown RBP1.05□□□□□ -2.24
USP48-209ENST00000487880 DNAH8Q96JB1 4490 aa1.05□□□□□ -2.24
USP48-209ENST00000487880 DYNC2H1Q8NCM8 4307 aaKnown RBP1.05□□□□□ -2.24
USP48-209ENST00000487880 TGP01266 2768 aa1.04□□□□□ -2.24
USP48-209ENST00000487880 HECTD4Q9Y4D8 3996 aa1.04□□□□□ -2.24
USP48-209ENST00000487880 COL7A1Q02388 2944 aa1.04□□□□□ -2.24
USP48-209ENST00000487880 FAM208BQ5VWN6 2430 aa1.04□□□□□ -2.24
USP48-209ENST00000487880 SMR3AQ99954 134 aa1.04□□□□□ -2.24
USP48-209ENST00000487880 FLNCQ14315 2725 aa1.04□□□□□ -2.24
USP48-209ENST00000487880 PRKDCP78527 4128 aaKnown RBP1.04□□□□□ -2.24
USP48-209ENST00000487880 DNAH10Q8IVF4 4471 aa1.03□□□□□ -2.24
USP48-209ENST00000487880 TENM3Q9P273 2699 aa1.03□□□□□ -2.24
USP48-209ENST00000487880 CMYA5Q8N3K9 4069 aa1.03□□□□□ -2.25
USP48-209ENST00000487880 DNAH6Q9C0G6 4158 aa1.03□□□□□ -2.25
USP48-209ENST00000487880 COL6A5A8TX70 2615 aa1.02□□□□□ -2.25
USP48-209ENST00000487880 ITPR2Q14571 2701 aa1.02□□□□□ -2.25
USP48-209ENST00000487880 NBEAL1Q6ZS30 2694 aa1.02□□□□□ -2.25
USP48-209ENST00000487880 ZNF469Q96JG9 3925 aaPredicted RBP1.02□□□□□ -2.25
USP48-209ENST00000487880 FLNBO75369 2602 aaKnown RBP1.02□□□□□ -2.25
USP48-209ENST00000487880 DNAH9Q9NYC9 4486 aa1.01□□□□□ -2.25
USP48-209ENST00000487880 CUBNO60494 3623 aa1.01□□□□□ -2.25
USP48-209ENST00000487880 Q5VSD8 79 aa1.01□□□□□ -2.25
USP48-209ENST00000487880 STAB2Q8WWQ8 2551 aa1.01□□□□□ -2.25
USP48-209ENST00000487880 DNAH11Q96DT5 4516 aa1□□□□□ -2.25
USP48-209ENST00000487880 CSMD3Q7Z407 3707 aa1□□□□□ -2.25
USP48-209ENST00000487880 HUWE1Q7Z6Z7 4374 aaKnown RBP1□□□□□ -2.25
USP48-209ENST00000487880 DNAH2Q9P225 4427 aa1□□□□□ -2.25
USP48-209ENST00000487880 ATRQ13535 2644 aa1□□□□□ -2.25
USP48-209ENST00000487880 IGSF10Q6WRI0 2623 aa1□□□□□ -2.25
USP48-209ENST00000487880 SACSQ9NZJ4 4579 aa0.99□□□□□ -2.25
USP48-209ENST00000487880 NSD1Q96L73 2696 aaPredicted RBP0.99□□□□□ -2.25
USP48-209ENST00000487880 C9orf92A6NGG3 77 aa0.99□□□□□ -2.25
USP48-209ENST00000487880 DMBT1Q9UGM3 2413 aaPredicted RBP0.99□□□□□ -2.25
USP48-209ENST00000487880 PLECQ15149 4684 aaKnown RBP0.97□□□□□ -2.25
USP48-209ENST00000487880 TNP1P09430 55 aa0.97□□□□□ -2.25
USP48-209ENST00000487880 KMT2AQ03164 3969 aa0.96□□□□□ -2.26
USP48-209ENST00000487880 STAB1Q9NY15 2570 aa0.96□□□□□ -2.26
USP48-209ENST00000487880 MGAM2Q2M2H8 2515 aa0.95□□□□□ -2.26
USP48-209ENST00000487880 UBR4Q5T4S7 5183 aa0.95□□□□□ -2.26
USP48-209ENST00000487880 VPS13BQ7Z7G8 4022 aa0.95□□□□□ -2.26
USP48-209ENST00000487880 PKHD1L1Q86WI1 4243 aa0.95□□□□□ -2.26
USP48-209ENST00000487880 PKHD1P08F94 4074 aa0.94□□□□□ -2.26
USP48-209ENST00000487880 MYCBP2O75592 4640 aa0.94□□□□□ -2.26
USP48-209ENST00000487880 LRP1BQ9NZR2 4599 aa0.94□□□□□ -2.26
USP48-209ENST00000487880 DNAH5Q8TE73 4624 aa0.93□□□□□ -2.26
USP48-209ENST00000487880 LRP1Q07954 4544 aaKnown RBP0.93□□□□□ -2.26
USP48-209ENST00000487880 PKD1P98161 4303 aa0.93□□□□□ -2.26
USP48-209ENST00000487880 APOBP04114 4563 aaKnown RBP0.93□□□□□ -2.26
USP48-209ENST00000487880 DYNC1H1Q14204 4646 aaKnown RBP0.92□□□□□ -2.26
USP48-209ENST00000487880 STARD9Q9P2P6 4700 aa0.92□□□□□ -2.26
USP48-209ENST00000487880 TNXBP22105 4242 aa0.91□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 96.2 ms