RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 SPRR2GQ9BYE4 73 aa7.94□□□□□ -1.14
COL9A3-212ENST00000481800 A0A087WVE0 104 aa7.93□□□□□ -1.14
COL9A3-212ENST00000481800 KRTAP19-8Q3LI54 63 aa7.89□□□□□ -1.15
COL9A3-212ENST00000481800 A6NN06 94 aa7.88□□□□□ -1.15
COL9A3-212ENST00000481800 NDUFC1O43677 76 aa7.88□□□□□ -1.15
COL9A3-212ENST00000481800 MT1BP07438 61 aa7.88□□□□□ -1.15
COL9A3-212ENST00000481800 IMUPQ9GZP8 106 aa7.87□□□□□ -1.15
COL9A3-212ENST00000481800 A0A1B0GV90 55 aa7.85□□□□□ -1.15
COL9A3-212ENST00000481800 LINC00208Q96KT6 92 aa7.85□□□□□ -1.15
COL9A3-212ENST00000481800 CRIPTQ9P021 101 aa7.85□□□□□ -1.15
COL9A3-212ENST00000481800 A8MUN3 132 aa7.84□□□□□ -1.15
COL9A3-212ENST00000481800 MP68P56378 58 aa7.83□□□□□ -1.16
COL9A3-212ENST00000481800 KRTAP6-3Q3LI67 103 aa7.82□□□□□ -1.16
COL9A3-212ENST00000481800 OCR1Q9BZK8 76 aa7.78□□□□□ -1.16
COL9A3-212ENST00000481800 H0YAA0 97 aa7.77□□□□□ -1.17
COL9A3-212ENST00000481800 J3QR89 54 aa7.77□□□□□ -1.17
COL9A3-212ENST00000481800 KRTAP10-5P60370 271 aa7.73□□□□□ -1.17
COL9A3-212ENST00000481800 ADM2Q7Z4H4 148 aa7.71□□□□□ -1.18
COL9A3-212ENST00000481800 SCGB1A1P11684 91 aa7.7□□□□□ -1.18
COL9A3-212ENST00000481800 H3BPC8 53 aa7.69□□□□□ -1.18
COL9A3-212ENST00000481800 DMAC1Q96GE9 116 aa7.58□□□□□ -1.2
COL9A3-212ENST00000481800 C20orf197Q8N268 126 aa7.56□□□□□ -1.2
COL9A3-212ENST00000481800 R4GN34 69 aa7.54□□□□□ -1.2
COL9A3-212ENST00000481800 PLAC4Q8WY50 150 aa7.51□□□□□ -1.21
COL9A3-212ENST00000481800 P0C880 135 aa7.5□□□□□ -1.21
COL9A3-212ENST00000481800 PRO2289Q9P1D8 64 aa7.5□□□□□ -1.21
COL9A3-212ENST00000481800 NEBP20929 6669 aa7.47□□□□□ -1.21
COL9A3-212ENST00000481800 M0QZ58 72 aa7.47□□□□□ -1.21
COL9A3-212ENST00000481800 TRAV7A0A075B6U4 112 aa7.45□□□□□ -1.22
COL9A3-212ENST00000481800 MT-ATP8P03928 68 aa7.45□□□□□ -1.22
COL9A3-212ENST00000481800 SMIM20Q8N5G0 67 aa7.45□□□□□ -1.22
COL9A3-212ENST00000481800 K7ERU9 68 aa7.44□□□□□ -1.22
COL9A3-212ENST00000481800 ACYP2P14621 99 aa7.44□□□□□ -1.22
COL9A3-212ENST00000481800 KRTAP5-9P26371 169 aa7.42□□□□□ -1.22
COL9A3-212ENST00000481800 MUC12Q9UKN1 5478 aa7.42□□□□□ -1.22
COL9A3-212ENST00000481800 KRTAP3-2Q9BYR7 98 aa7.41□□□□□ -1.22
COL9A3-212ENST00000481800 MT1XP80297 61 aa7.39□□□□□ -1.23
COL9A3-212ENST00000481800 SPTSSBQ8NFR3 76 aa7.39□□□□□ -1.23
COL9A3-212ENST00000481800 LINC01554Q52M75 96 aa7.38□□□□□ -1.23
COL9A3-212ENST00000481800 CHKB-CPT1BH3BT56 60 aa7.33□□□□□ -1.24
COL9A3-212ENST00000481800 KMT2DO14686 5537 aa7.31□□□□□ -1.24
COL9A3-212ENST00000481800 SNURFQ9Y675 71 aa7.28□□□□□ -1.24
COL9A3-212ENST00000481800 KRTAP20-1Q3LI63 56 aa7.27□□□□□ -1.25
COL9A3-212ENST00000481800 SPRR2FQ96RM1 72 aa7.25□□□□□ -1.25
COL9A3-212ENST00000481800 KRTAP12-2P59991 146 aa7.23□□□□□ -1.25
COL9A3-212ENST00000481800 KRTAP8-1Q8IUC2 63 aa7.23□□□□□ -1.25
COL9A3-212ENST00000481800 MDN1Q9NU22 5596 aa7.22□□□□□ -1.25
COL9A3-212ENST00000481800 SPANXA2-OT1Q8N9U9 137 aa7.19□□□□□ -1.26
COL9A3-212ENST00000481800 SERP2Q8N6R1 65 aa7.16□□□□□ -1.26
COL9A3-212ENST00000481800 SPRR2EP22531 72 aa7.15□□□□□ -1.26
COL9A3-212ENST00000481800 SPRR2BP35325 72 aa7.15□□□□□ -1.26
COL9A3-212ENST00000481800 SPRR2AP35326 72 aa7.15□□□□□ -1.26
COL9A3-212ENST00000481800 KRTAP4-8A0A0G2JLE6 195 aa7.08□□□□□ -1.28
COL9A3-212ENST00000481800 KRTAP4-8Q9BYQ9 185 aa7.08□□□□□ -1.28
COL9A3-212ENST00000481800 KRTAP2-3P0C7H8 128 aa7.07□□□□□ -1.28
COL9A3-212ENST00000481800 KRTAP10-7P60409 375 aaPredicted RBP7.07□□□□□ -1.28
COL9A3-212ENST00000481800 KRTAP2-4Q9BYR9 128 aa7.07□□□□□ -1.28
COL9A3-212ENST00000481800 KRTAP10-12P60413 245 aa7.02□□□□□ -1.29
COL9A3-212ENST00000481800 LCE1AQ5T7P2 110 aa7.01□□□□□ -1.29
COL9A3-212ENST00000481800 COA5Q86WW8 74 aa6.99□□□□□ -1.29
COL9A3-212ENST00000481800 KRTAP13-4Q3LI77 160 aa6.98□□□□□ -1.29
COL9A3-212ENST00000481800 SEC61GP60059 68 aa6.95□□□□□ -1.3
COL9A3-212ENST00000481800 CAMK2N1Q7Z7J9 78 aa6.95□□□□□ -1.3
COL9A3-212ENST00000481800 SERP1Q9Y6X1 66 aa6.93□□□□□ -1.3
COL9A3-212ENST00000481800 COX7CP15954 63 aa6.92□□□□□ -1.3
COL9A3-212ENST00000481800 SPRR2DP22532 72 aa6.91□□□□□ -1.3
COL9A3-212ENST00000481800 KRTAP2-2Q9BYT5 123 aa6.85□□□□□ -1.31
COL9A3-212ENST00000481800 KRTAP2-1Q9BYU5 128 aa6.85□□□□□ -1.31
COL9A3-212ENST00000481800 A0A0D9SG42 100 aa6.83□□□□□ -1.32
COL9A3-212ENST00000481800 H7BZZ5 65 aa6.81□□□□□ -1.32
COL9A3-212ENST00000481800 A0A1B0GU33 70 aa6.79□□□□□ -1.32
COL9A3-212ENST00000481800 SPATA8Q6RVD6 105 aa6.78□□□□□ -1.32
COL9A3-212ENST00000481800 CYSTM1Q9H1C7 97 aa6.77□□□□□ -1.33
COL9A3-212ENST00000481800 SPINT4Q6UDR6 99 aa6.75□□□□□ -1.33
COL9A3-212ENST00000481800 LCE3BQ5TA77 95 aa6.72□□□□□ -1.33
COL9A3-212ENST00000481800 ANAPC13Q9BS18 74 aa6.68□□□□□ -1.34
COL9A3-212ENST00000481800 A0A1B0GU69 56 aa6.67□□□□□ -1.34
COL9A3-212ENST00000481800 KRTAP12-1P59990 96 aa6.64□□□□□ -1.35
COL9A3-212ENST00000481800 SMIM26A0A096LP01 95 aa6.62□□□□□ -1.35
COL9A3-212ENST00000481800 KRTAP19-7Q3SYF9 63 aa6.6□□□□□ -1.35
COL9A3-212ENST00000481800 MT1EP04732 61 aa6.56□□□□□ -1.36
COL9A3-212ENST00000481800 KRTAP19-3Q7Z4W3 81 aa6.53□□□□□ -1.36
COL9A3-212ENST00000481800 A8MU10 97 aa6.52□□□□□ -1.37
COL9A3-212ENST00000481800 CCDC179H3BU77 68 aa6.52□□□□□ -1.37
COL9A3-212ENST00000481800 LCE5AQ5TCM9 118 aa6.52□□□□□ -1.37
COL9A3-212ENST00000481800 PRR15LQ9BU68 103 aa6.49□□□□□ -1.37
COL9A3-212ENST00000481800 ATP5EP56381 51 aaPredicted RBP6.48□□□□□ -1.37
COL9A3-212ENST00000481800 KRTAP19-5Q3LI72 72 aa6.46□□□□□ -1.38
COL9A3-212ENST00000481800 DSTQ03001 7570 aaKnown RBP6.39□□□□□ -1.39
COL9A3-212ENST00000481800 TNP1P09430 55 aa6.38□□□□□ -1.39
COL9A3-212ENST00000481800 MT1GP13640 62 aa6.38□□□□□ -1.39
COL9A3-212ENST00000481800 LINC01558Q9Y6Z2 57 aa6.37□□□□□ -1.39
COL9A3-212ENST00000481800 PP632Q6XCG6 107 aa6.36□□□□□ -1.39
COL9A3-212ENST00000481800 C10orf95Q9H7T3 257 aa6.36□□□□□ -1.39
COL9A3-212ENST00000481800 LCE3AQ5TA76 89 aa6.31□□□□□ -1.4
COL9A3-212ENST00000481800 TMEM258P61165 79 aa6.29□□□□□ -1.4
COL9A3-212ENST00000481800 MT1LQ93083 61 aa6.27□□□□□ -1.41
COL9A3-212ENST00000481800 UQCR11O14957 56 aa6.25□□□□□ -1.41
COL9A3-212ENST00000481800 MT1MQ8N339 61 aa6.25□□□□□ -1.41
COL9A3-212ENST00000481800 KRTAP4-9Q9BYQ8 210 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms