RNA–Protein interactions for RNA: ENST00000473565.5

CLK1-210, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 3,208 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-210ENST00000473565 SVIPQ8NHG7 77 aa3.17□□□□□ -1.9
CLK1-210ENST00000473565 LINC01558Q9Y6Z2 57 aa3.17□□□□□ -1.9
CLK1-210ENST00000473565 KRTAP4-1Q9BYQ7 146 aa3.16□□□□□ -1.9
CLK1-210ENST00000473565 V9GYY9 64 aa3.16□□□□□ -1.9
CLK1-210ENST00000473565 A8MU10 97 aa3.15□□□□□ -1.91
CLK1-210ENST00000473565 BRK1Q8WUW1 75 aa3.14□□□□□ -1.91
CLK1-210ENST00000473565 SEC61BP60468 96 aaKnown RBP3.13□□□□□ -1.91
CLK1-210ENST00000473565 LCA10Q71F78 164 aa3.13□□□□□ -1.91
CLK1-210ENST00000473565 A0A1B0GU69 56 aa3.12□□□□□ -1.91
CLK1-210ENST00000473565 UBR4Q5T4S7 5183 aa3.12□□□□□ -1.91
CLK1-210ENST00000473565 KRTAP3-3Q9BYR6 98 aa3.12□□□□□ -1.91
CLK1-210ENST00000473565 RNF213Q63HN8 5207 aa3.12□□□□□ -1.91
CLK1-210ENST00000473565 A6NED7 52 aa3.11□□□□□ -1.91
CLK1-210ENST00000473565 S4R3F8 94 aa3.11□□□□□ -1.91
CLK1-210ENST00000473565 H1FX-AS1Q4G0G2 97 aa3.1□□□□□ -1.91
CLK1-210ENST00000473565 RBM12B-AS1Q9P1G2 102 aa3.1□□□□□ -1.91
CLK1-210ENST00000473565 SPTSSBQ8NFR3 76 aa3.09□□□□□ -1.92
CLK1-210ENST00000473565 SEC61GP60059 68 aa3.06□□□□□ -1.92
CLK1-210ENST00000473565 FAT4Q6V0I7 4981 aa3.06□□□□□ -1.92
CLK1-210ENST00000473565 PRO0628Q9UI54 55 aa3.04□□□□□ -1.92
CLK1-210ENST00000473565 FLGP20930 4061 aaPredicted RBP3.04□□□□□ -1.92
CLK1-210ENST00000473565 KRTAP19-2Q3LHN2 52 aa3.04□□□□□ -1.92
CLK1-210ENST00000473565 CDC42SE1Q9NRR8 79 aa3.02□□□□□ -1.93
CLK1-210ENST00000473565 P0C880 135 aa3.02□□□□□ -1.93
CLK1-210ENST00000473565 KRTAP10-6P60371 365 aaPredicted RBP3.02□□□□□ -1.93
CLK1-210ENST00000473565 KRTAP3-2Q9BYR7 98 aa3.02□□□□□ -1.93
CLK1-210ENST00000473565 UQCR11O14957 56 aa3.02□□□□□ -1.93
CLK1-210ENST00000473565 SPATA8Q6RVD6 105 aa3.02□□□□□ -1.93
CLK1-210ENST00000473565 A0A1B0GU33 70 aa3.01□□□□□ -1.93
CLK1-210ENST00000473565 MIR22HGQ0VDD5 57 aa3.01□□□□□ -1.93
CLK1-210ENST00000473565 CSAG1Q6PB30 78 aa3.01□□□□□ -1.93
CLK1-210ENST00000473565 H0YAA0 97 aa3□□□□□ -1.93
CLK1-210ENST00000473565 ADM2Q7Z4H4 148 aa3□□□□□ -1.93
CLK1-210ENST00000473565 KRTAP13-4Q3LI77 160 aa2.98□□□□□ -1.93
CLK1-210ENST00000473565 A0A0D9SG42 100 aa2.95□□□□□ -1.94
CLK1-210ENST00000473565 PMAIP1Q13794 54 aa2.95□□□□□ -1.94
CLK1-210ENST00000473565 LCE2CQ5TA81 110 aa2.95□□□□□ -1.94
CLK1-210ENST00000473565 LORP23490 312 aaPredicted RBP2.94□□□□□ -1.94
CLK1-210ENST00000473565 A6NN06 94 aa2.91□□□□□ -1.94
CLK1-210ENST00000473565 LINC01554Q52M75 96 aa2.89□□□□□ -1.95
CLK1-210ENST00000473565 M0QZ58 72 aa2.89□□□□□ -1.95
CLK1-210ENST00000473565 M0R2T5 61 aa2.89□□□□□ -1.95
CLK1-210ENST00000473565 MT1HP80294 61 aa2.89□□□□□ -1.95
CLK1-210ENST00000473565 R4GN34 69 aa2.87□□□□□ -1.95
CLK1-210ENST00000473565 KRTAP12-2P59991 146 aa2.86□□□□□ -1.95
CLK1-210ENST00000473565 SPINT4Q6UDR6 99 aa2.85□□□□□ -1.95
CLK1-210ENST00000473565 KRTAP12-1P59990 96 aa2.83□□□□□ -1.96
CLK1-210ENST00000473565 PRAC1Q96KF2 57 aa2.83□□□□□ -1.96
CLK1-210ENST00000473565 KTN1-AS1Q86SY8 53 aa2.82□□□□□ -1.96
CLK1-210ENST00000473565 K7ERS5 55 aa2.81□□□□□ -1.96
CLK1-210ENST00000473565 KRTAP9-8Q9BYQ0 159 aa2.8□□□□□ -1.96
CLK1-210ENST00000473565 MT2AP02795 61 aa2.79□□□□□ -1.96
CLK1-210ENST00000473565 MT1FP04733 61 aa2.79□□□□□ -1.96
CLK1-210ENST00000473565 CRIPTQ9P021 101 aa2.78□□□□□ -1.96
CLK1-210ENST00000473565 KRTAP10-10P60014 251 aa2.78□□□□□ -1.96
CLK1-210ENST00000473565 KRTAP5-3Q6L8H2 238 aa2.76□□□□□ -1.97
CLK1-210ENST00000473565 KRTAP19-1Q8IUB9 90 aa2.75□□□□□ -1.97
CLK1-210ENST00000473565 ROMO1P60602 79 aa2.75□□□□□ -1.97
CLK1-210ENST00000473565 KRTAP4-8Q9BYQ9 185 aa2.73□□□□□ -1.97
CLK1-210ENST00000473565 SPRR2GQ9BYE4 73 aa2.72□□□□□ -1.97
CLK1-210ENST00000473565 LCE2AQ5TA79 106 aaPredicted RBP2.71□□□□□ -1.98
CLK1-210ENST00000473565 CAMK2N1Q7Z7J9 78 aa2.71□□□□□ -1.98
CLK1-210ENST00000473565 C10orf95Q9H7T3 257 aa2.7□□□□□ -1.98
CLK1-210ENST00000473565 KRTAP4-7Q9BYR0 210 aa2.69□□□□□ -1.98
CLK1-210ENST00000473565 USH2AO75445 5202 aa2.68□□□□□ -1.98
CLK1-210ENST00000473565 KRTAP9-3Q9BYQ3 159 aa2.68□□□□□ -1.98
CLK1-210ENST00000473565 KRTAP25-1Q3LHN0 102 aa2.66□□□□□ -1.98
CLK1-210ENST00000473565 KRTAP4-8A0A0G2JLE6 195 aa2.65□□□□□ -1.98
CLK1-210ENST00000473565 PLAC4Q8WY50 150 aa2.65□□□□□ -1.98
CLK1-210ENST00000473565 MT1BP07438 61 aa2.64□□□□□ -1.99
CLK1-210ENST00000473565 KRTAP19-8Q3LI54 63 aa2.63□□□□□ -1.99
CLK1-210ENST00000473565 LCE2BO14633 110 aa2.63□□□□□ -1.99
CLK1-210ENST00000473565 FSIP2Q5CZC0 6907 aa2.59□□□□□ -1.99
CLK1-210ENST00000473565 MT1XP80297 61 aa2.57□□□□□ -2
CLK1-210ENST00000473565 KRTAP10-5P60370 271 aa2.57□□□□□ -2
CLK1-210ENST00000473565 TNP1P09430 55 aa2.55□□□□□ -2
CLK1-210ENST00000473565 LCE2DQ5TA82 110 aaPredicted RBP2.55□□□□□ -2
CLK1-210ENST00000473565 SSPOA2VEC9 5147 aa2.55□□□□□ -2
CLK1-210ENST00000473565 KMT2DO14686 5537 aa2.52□□□□□ -2.01
CLK1-210ENST00000473565 KRTAP10-7P60409 375 aaPredicted RBP2.5□□□□□ -2.01
CLK1-210ENST00000473565 LCE3AQ5TA76 89 aa2.49□□□□□ -2.01
CLK1-210ENST00000473565 KRTAP4-9Q9BYQ8 210 aa2.48□□□□□ -2.01
CLK1-210ENST00000473565 KRTAP9-2Q9BYQ4 174 aa2.47□□□□□ -2.01
CLK1-210ENST00000473565 PRO2289Q9P1D8 64 aa2.47□□□□□ -2.01
CLK1-210ENST00000473565 PP632Q6XCG6 107 aa2.46□□□□□ -2.02
CLK1-210ENST00000473565 KRTAP10-12P60413 245 aa2.45□□□□□ -2.02
CLK1-210ENST00000473565 KRTAP4-2Q9BYR5 136 aa2.45□□□□□ -2.02
CLK1-210ENST00000473565 KRTAP9-6A0A140TA67 174 aa2.44□□□□□ -2.02
CLK1-210ENST00000473565 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.42□□□□□ -2.02
CLK1-210ENST00000473565 KRTAP23-1A1A580 65 aa2.41□□□□□ -2.02
CLK1-210ENST00000473565 FCGBPQ9Y6R7 5405 aaPredicted RBP2.41□□□□□ -2.02
CLK1-210ENST00000473565 KRTAP19-6Q3LI70 58 aa2.38□□□□□ -2.03
CLK1-210ENST00000473565 KRTAP8-1Q8IUC2 63 aa2.38□□□□□ -2.03
CLK1-210ENST00000473565 KRTAP15-1Q3LI76 137 aa2.38□□□□□ -2.03
CLK1-210ENST00000473565 LCE1DQ5T752 114 aa2.38□□□□□ -2.03
CLK1-210ENST00000473565 KRTAP12-3P60328 96 aa2.36□□□□□ -2.03
CLK1-210ENST00000473565 HMCN1Q96RW7 5635 aa2.36□□□□□ -2.03
CLK1-210ENST00000473565 KRTAP19-5Q3LI72 72 aa2.35□□□□□ -2.03
CLK1-210ENST00000473565 KRTAP9-9Q9BYP9 154 aa2.35□□□□□ -2.03
CLK1-210ENST00000473565 KRTAP9-4Q9BYQ2 154 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 258 ms