RNA–Protein interactions for RNA: ENST00000473036.2

TPM3-216, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 746 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-216ENST00000473036 SSPOA2VEC9 5147 aa6.46□□□□□ -1.38
TPM3-216ENST00000473036 USH2AO75445 5202 aa6.46□□□□□ -1.38
TPM3-216ENST00000473036 KRTAP9-8Q9BYQ0 159 aa6.45□□□□□ -1.38
TPM3-216ENST00000473036 A8MUN3 132 aa6.42□□□□□ -1.38
TPM3-216ENST00000473036 SNURFQ9Y675 71 aa6.42□□□□□ -1.38
TPM3-216ENST00000473036 FCGBPQ9Y6R7 5405 aaPredicted RBP6.41□□□□□ -1.38
TPM3-216ENST00000473036 C4orf26Q17RF5 130 aa6.41□□□□□ -1.38
TPM3-216ENST00000473036 SPANXA2-OT1Q8N9U9 137 aa6.39□□□□□ -1.39
TPM3-216ENST00000473036 MACF1Q9UPN3 7388 aaKnown RBP6.38□□□□□ -1.39
TPM3-216ENST00000473036 H1FX-AS1Q4G0G2 97 aa6.37□□□□□ -1.39
TPM3-216ENST00000473036 MT2AP02795 61 aa6.36□□□□□ -1.39
TPM3-216ENST00000473036 KRTAP3-1Q9BYR8 98 aa6.35□□□□□ -1.39
TPM3-216ENST00000473036 SYNE2Q8WXH0 6885 aaKnown RBP6.34□□□□□ -1.39
TPM3-216ENST00000473036 CCDC179H3BU77 68 aa6.33□□□□□ -1.4
TPM3-216ENST00000473036 MT1FP04733 61 aa6.32□□□□□ -1.4
TPM3-216ENST00000473036 ACYP2P14621 99 aa6.32□□□□□ -1.4
TPM3-216ENST00000473036 H7BZZ5 65 aa6.31□□□□□ -1.4
TPM3-216ENST00000473036 DMAC1Q96GE9 116 aa6.3□□□□□ -1.4
TPM3-216ENST00000473036 KRTAP19-1Q8IUB9 90 aa6.29□□□□□ -1.4
TPM3-216ENST00000473036 PCP4P48539 62 aa6.28□□□□□ -1.4
TPM3-216ENST00000473036 ATP5EP56381 51 aaPredicted RBP6.28□□□□□ -1.4
TPM3-216ENST00000473036 TMEM258P61165 79 aa6.24□□□□□ -1.41
TPM3-216ENST00000473036 KRTAP9-3Q9BYQ3 159 aa6.24□□□□□ -1.41
TPM3-216ENST00000473036 S4R3F8 94 aa6.24□□□□□ -1.41
TPM3-216ENST00000473036 SPTSSBQ8NFR3 76 aa6.22□□□□□ -1.41
TPM3-216ENST00000473036 KRTAP10-10P60014 251 aa6.21□□□□□ -1.42
TPM3-216ENST00000473036 CHKB-CPT1BH3BT56 60 aa6.2□□□□□ -1.42
TPM3-216ENST00000473036 CSAG1Q6PB30 78 aa6.2□□□□□ -1.42
TPM3-216ENST00000473036 CYSTM1Q9H1C7 97 aa6.2□□□□□ -1.42
TPM3-216ENST00000473036 LCA10Q71F78 164 aa6.16□□□□□ -1.42
TPM3-216ENST00000473036 KRTAP19-6Q3LI70 58 aa6.14□□□□□ -1.43
TPM3-216ENST00000473036 COA5Q86WW8 74 aa6.11□□□□□ -1.43
TPM3-216ENST00000473036 KRTAP6-3Q3LI67 103 aa6.1□□□□□ -1.43
TPM3-216ENST00000473036 SERP1Q9Y6X1 66 aa6.04□□□□□ -1.44
TPM3-216ENST00000473036 H0YAA0 97 aa6.03□□□□□ -1.44
TPM3-216ENST00000473036 NEBP20929 6669 aa6.01□□□□□ -1.45
TPM3-216ENST00000473036 SEC61GP60059 68 aa5.98□□□□□ -1.45
TPM3-216ENST00000473036 RPS28P62857 69 aaKnown RBP5.97□□□□□ -1.45
TPM3-216ENST00000473036 CRIPTQ9P021 101 aa5.92□□□□□ -1.46
TPM3-216ENST00000473036 V9GYY9 64 aa5.91□□□□□ -1.46
TPM3-216ENST00000473036 ADM2Q7Z4H4 148 aa5.9□□□□□ -1.46
TPM3-216ENST00000473036 SPRR2GQ9BYE4 73 aa5.9□□□□□ -1.46
TPM3-216ENST00000473036 PRR15LQ9BU68 103 aa5.89□□□□□ -1.47
TPM3-216ENST00000473036 SMIM26A0A096LP01 95 aa5.87□□□□□ -1.47
TPM3-216ENST00000473036 MT1BP07438 61 aa5.86□□□□□ -1.47
TPM3-216ENST00000473036 A0A1B0GU69 56 aa5.85□□□□□ -1.47
TPM3-216ENST00000473036 KRTAP19-8Q3LI54 63 aa5.84□□□□□ -1.47
TPM3-216ENST00000473036 LINC01558Q9Y6Z2 57 aa5.84□□□□□ -1.47
TPM3-216ENST00000473036 MUC12Q9UKN1 5478 aa5.82□□□□□ -1.48
TPM3-216ENST00000473036 Q1T7F1 81 aa5.8□□□□□ -1.48
TPM3-216ENST00000473036 KRTAP20-1Q3LI63 56 aa5.8□□□□□ -1.48
TPM3-216ENST00000473036 M0QZ58 72 aa5.78□□□□□ -1.48
TPM3-216ENST00000473036 R4GN34 69 aa5.78□□□□□ -1.48
TPM3-216ENST00000473036 P0C880 135 aa5.77□□□□□ -1.49
TPM3-216ENST00000473036 Q5VV11 94 aa5.75□□□□□ -1.49
TPM3-216ENST00000473036 A0A1B0GU33 70 aa5.74□□□□□ -1.49
TPM3-216ENST00000473036 A6NN06 94 aa5.7□□□□□ -1.5
TPM3-216ENST00000473036 KRTAP5-9P26371 169 aa5.68□□□□□ -1.5
TPM3-216ENST00000473036 UQCR11O14957 56 aa5.67□□□□□ -1.5
TPM3-216ENST00000473036 MDN1Q9NU22 5596 aa5.66□□□□□ -1.5
TPM3-216ENST00000473036 KRTAP10-5P60370 271 aa5.64□□□□□ -1.51
TPM3-216ENST00000473036 KMT2DO14686 5537 aa5.63□□□□□ -1.51
TPM3-216ENST00000473036 LOC100996750A0A140TA64 210 aa5.63□□□□□ -1.51
TPM3-216ENST00000473036 PSPHP1O15172 72 aa5.63□□□□□ -1.51
TPM3-216ENST00000473036 KRTAP4-6Q9BYQ5 205 aa5.63□□□□□ -1.51
TPM3-216ENST00000473036 KRTAP2-3P0C7H8 128 aa5.58□□□□□ -1.52
TPM3-216ENST00000473036 KRTAP2-4Q9BYR9 128 aa5.58□□□□□ -1.52
TPM3-216ENST00000473036 LINC01554Q52M75 96 aa5.57□□□□□ -1.52
TPM3-216ENST00000473036 PLAC4Q8WY50 150 aa5.56□□□□□ -1.52
TPM3-216ENST00000473036 MT1XP80297 61 aa5.54□□□□□ -1.52
TPM3-216ENST00000473036 MIR22HGQ0VDD5 57 aa5.54□□□□□ -1.52
TPM3-216ENST00000473036 SPATA8Q6RVD6 105 aa5.54□□□□□ -1.52
TPM3-216ENST00000473036 A6NED7 52 aa5.53□□□□□ -1.52
TPM3-216ENST00000473036 KRTAP13-4Q3LI77 160 aa5.53□□□□□ -1.52
TPM3-216ENST00000473036 A0A0D9SG42 100 aa5.47□□□□□ -1.53
TPM3-216ENST00000473036 K7ERS5 55 aa5.46□□□□□ -1.54
TPM3-216ENST00000473036 SPINT4Q6UDR6 99 aa5.42□□□□□ -1.54
TPM3-216ENST00000473036 PRO2289Q9P1D8 64 aa5.41□□□□□ -1.54
TPM3-216ENST00000473036 A8MU10 97 aa5.4□□□□□ -1.54
TPM3-216ENST00000473036 CAMK2N1Q7Z7J9 78 aa5.4□□□□□ -1.54
TPM3-216ENST00000473036 CDC42SE1Q9NRR8 79 aa5.4□□□□□ -1.54
TPM3-216ENST00000473036 KRTAP12-1P59990 96 aa5.38□□□□□ -1.55
TPM3-216ENST00000473036 KRTAP2-2Q9BYT5 123 aa5.38□□□□□ -1.55
TPM3-216ENST00000473036 KRTAP2-1Q9BYU5 128 aa5.38□□□□□ -1.55
TPM3-216ENST00000473036 SPRR2EP22531 72 aa5.36□□□□□ -1.55
TPM3-216ENST00000473036 SPRR2BP35325 72 aa5.36□□□□□ -1.55
TPM3-216ENST00000473036 SPRR2AP35326 72 aa5.36□□□□□ -1.55
TPM3-216ENST00000473036 SPRR2FQ96RM1 72 aa5.35□□□□□ -1.55
TPM3-216ENST00000473036 KRTAP12-2P59991 146 aa5.33□□□□□ -1.56
TPM3-216ENST00000473036 KRTAP10-7P60409 375 aaPredicted RBP5.29□□□□□ -1.56
TPM3-216ENST00000473036 KRTAP4-8A0A0G2JLE6 195 aa5.26□□□□□ -1.57
TPM3-216ENST00000473036 LCE1AQ5T7P2 110 aa5.26□□□□□ -1.57
TPM3-216ENST00000473036 BRK1Q8WUW1 75 aa5.26□□□□□ -1.57
TPM3-216ENST00000473036 KRTAP4-8Q9BYQ9 185 aa5.26□□□□□ -1.57
TPM3-216ENST00000473036 KRTAP10-12P60413 245 aa5.24□□□□□ -1.57
TPM3-216ENST00000473036 KRTAP8-1Q8IUC2 63 aa5.23□□□□□ -1.57
TPM3-216ENST00000473036 SPRR2DP22532 72 aa5.2□□□□□ -1.58
TPM3-216ENST00000473036 GPR98Q8WXG9 6306 aa5.16□□□□□ -1.58
TPM3-216ENST00000473036 TNP1P09430 55 aa5.11□□□□□ -1.59
TPM3-216ENST00000473036 LCE3BQ5TA77 95 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms